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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020882 ID=TCONS_00020882|Name=TCONS_00020882|organism=Clytia hemisphaerica|type=transcript|length=2708bpRun BLAST on NCBI protein sequence of TCONS_00020882-protein >TCONS_00020882-protein ID=TCONS_00020882-protein|Name=TCONS_00020882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=798bp MPALQDLDFDRFTKSSSYVGGQDYKKLQREESNTTNRRRWSVFAVGSISMRun BLAST on NCBI transcript from alignment at sc0000373:101943..113777+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020882 ID=TCONS_00020882|Name=TCONS_00020882|organism=Clytia hemisphaerica|type=transcript|length=11835bp|location=Sequence derived from alignment at sc0000373:101943..113777+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000373:101943..113777+ >TCONS_00020882 ID=TCONS_00020882|Name=TCONS_00020882|organism=Clytia hemisphaerica|type=CDS|length=38352bp|location=Sequence derived from alignment at sc0000373:101943..113777+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020882 vs. Swiss-Prot (Human)
Match: ECE2 (Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4) HSP 1 Score: 486.878 bits (1252), Expect = 6.909e-157 Identity = 253/689 (36.72%), Postives = 401/689 (58.20%), Query Frame = 3
Query: 453 AKCDTAECKKVAKYIKNSLDTTVDPCQDFYKFSCGNWIKNNPIPXXXXXXXXXXXLNRKVEKQLKKILEPSSKDKIPTSFMYKKAKNYYESCKDMKAINALKATPLIDLINAIGGWAMGGKGVKFDLKNYDVMKIIKDIHKDFTSSGGPLFSVHVSDDPKHTNKHIIEVDQAGPSLSRELYMTDSPDSRKTINGYRQYLEDVATLL--KCKNVKKLANQTIEFERQLATISVPDDIK--QKSWFNKIKLKELMQKAPDYDWMSHINYVFQGHNKKVNPNSYIVVPAMPYLKKMMTIIKHTEKEVLSTYIVWSIIQDEIPYLSQKFLNIRKKYKENVLGTK-GLRKRWKTCVAYTNEYLGEGLAETYVDHHFPKSKKTYIENMISNIRTAFIANVKTLSWMDNETKCGVKDKAESMIDRVGYPSYLRNNTRFKIKYGKLDINDKEFFKNRLNIIKFAHQRMLNKINEEVDKIEWSMDPQTVNALYNFNINGMIIPAGILQPPFLHGDQGLSAAMAYGAIGAILGHEMSHGFDNTGRQFDKYGEMNDWWTKSSKEKFNNRTKCMIDQYNQYQVAGGHHVNGKLTLGENIADNGGFKTSLRAYYDWLKKNEDKERTFEGLEYDNHQLFHISFGQAYCSISRPNEEYLATLNDRHTEERFRVIGTLSNSEEFAKAFKCKQGSRMNPKKKCSVW 2504
+ C T C +VA I SLD V PC+DFY+FSCG WI+ NP+P S ++TF+ L + + LK +LE ++ + +S +K + +Y SC ++ I L A PL DLI IGGW + G +D N+ M+++K + + ++ P F+V++S D K +N ++I+VDQ+G L Y + + K + Y Y+E++ LL + + ++ Q +E E QLA I+VP D + ++ ++K+ + EL AP DW+ ++++ +++ + +VV M YL+++ +I TE +L+ Y++W+++Q L ++F + ++K E + GTK RW+TC++ T++ LG L +V F + K E MIS IRTAF + L WMD +T+ K+KA+++ D +G+P ++ Y +I++ FF+N LN+ F+ + M +++ + + +WSM PQTVNA Y N ++ PAGILQ PF + A+ +G IG ++GHE++H FD+ GR++DK G + WW S F N T CM +QYNQYQV G +NG+ TLGENIADNGG K + AY WL+K+ +E+ + NHQLF + F Q +CS+ P + + D H+ RFRV+GTLSNS +F + F C GS MNP + C VW
Sbjct: 210 STCLTEACIRVAGKILESLDRGVSPCEDFYQFSCGGWIRRNPLPDGRSRWNTFNSLWDQNQAILKHLLENTTFNS--SSEAEQKTQRFYLSCLQVERIEELGAQPLRDLIEKIGGWNITGP---WDQDNF--MEVLKAVAGTYRAT--PFFTVYISADSKSSNSNVIQVDQSGLFLPSRDYYLNRTANEKVLTAYLDYMEELGMLLGGRPTSTREQMQQVLELEIQLANITVPQDQRRDEEKIYHKMSISELQALAPSMDWLEFLSFLLS--PLELSDSEPVVVYGMDYLQQVSELINRTEPSILNNYLIWNLVQKTTSSLDRRFESAQEKLLETLYGTKKSCVPRWQTCISNTDDALGFALGSLFVKATFDRQSKEIAEGMISEIRTAFEEALGQLVWMDEKTRQAAKEKADAIYDMIGFPDFILEPKELDDVYDGYEISEDSFFQNMLNLYNFSAKVMADQLRKPPSRDQWSMTPQTVNAYYLPTKNEIVFPAGILQAPFYARNH--PKALNFGGIGVVMGHELTHAFDDQGREYDKEGNLRPWWQNESLAAFRNHTACMEEQYNQYQV-NGERLNGRQTLGENIADNGGLKAAYNAYKAWLRKH-GEEQQLPAVGLTNHQLFFVGFAQVWCSVRTPESSHEGLVTDPHSPARFRVLGTLSNSRDFLRHFGCPVGSPMNPGQLCEVW 883 The following BLAST results are available for this feature:
BLAST of TCONS_00020882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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