TCONS_00020683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020683
Unique NameTCONS_00020683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1681

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020683 ID=TCONS_00020683|Name=TCONS_00020683|organism=Clytia hemisphaerica|type=transcript|length=1681bp
TTCACAGCTTACAGGCCAACCAACTGTGCTCTACTATGCACCAGTATTAT
TCAAACGATTAGGATTTAACATGAACACGTCTGCTACGCTAGCTACAATC
GGTCTTGGCATTGTTAAgGTTGTATTCACGATGGGGACATTACTCTCTGT
TGATAAATTAGgTCGACGAAAGTTTCTACTTGTTGGTGCTACGATAATGA
CAATCAGTTTGATCACCTTAAGTGCTGTCACTGAACCTTTCCAAAATGGT
AACGAACAGCCTGCGTGTCATGATTATATTGGAACGCAAAAAGTTCATTC
CCATCTCTTAAACGTTGATAATAACAACAATCGAAATTGTACGATAGAAC
ATTTCAATAACACTATTATAGAtggtataaaaaataaaacacttaCACAC
AAAAAGCTTGGGAATAGCAGTAGTATTATAAAAAAGACATTATGTAGGAA
TTCAACGAAAAACAAAACTAATTTACGGACTGATCATGACAATGATGACA
ACGATGCAATGGGTTCAATTCctgggtctgtaaaatacacatgttTATTT
GCCTTGATGTTATTCGTGATTGGATATGCAGTTGGTTATGGCCCAAtGTC
ATGGTTGATATTGACGGAGATTTTTCCGACAGCCATCAAAGGTCGTGCAG
CATCGGTAGCAACAAGCGTCAATTGGGGAACGAATATCGTTATTTCGCTT
ACTTTTCTCGATGTTTTGGGTTCATTGGGtccatttttaacatttttatg
tTACTCCGTTATCGGAGTGGTTTCTATTATCTTCTTATATCATATCGTCC
CCGAAACGAAAGGAAAATCGTTAGAAGAAATTTCAGAACATCTCAATGAG
AGGCGTGTCAAATGTAGTACAGTTCGATGTTGTGCTGAAGGACAAATGAT
TTACGTTCAAGATGATGAAGGTGATATTCTCTTGAATGACAACGAGGCTG
AGGATATCATGTGATTGTGGACACGAGGCTGAGGATATCATGTGATATCG
GACACGAGGATGTTAAAAGCATTTATTTTATatggtacacgctttttttt
agaagaatagtgtactttggctgagggtacgagcattatttttatttttc
tattgttctaaacaataggcttAGTCTAACTCTGAAATCTCACCTTAATA
TATCTATAGAagtttttcatataaaaaaaatgcgtgtatttcattttaag
aaatttttttttagatatttgaattttattcaaaGCTTTTCTCGATTCGT
CAAAGATCACAAACTGTACTGTACTTTTGAATTCAACTCAACATGTAAAT
AAATGTTTTGAGCCCCCCCCCTCCTACAGATATCAATTTCCTAAAATTCT
CTTAATTCAAGattcaatgttttcaaaaaaatatcttggaattttttttt
ttttgttttctttgtcgAGTTGAGTGAGCTGGATGGTATGACGTTAGTAA
CAAAATTGACTTATTTCTATGCATGAGCACCTATTTAAAATATTATCTTT
CCCTTTAATATTTGTGGTATtaagatttttaggattttaattttatatta
ttCTACAGGATTCCTGTTAATGTGTTTAgtttttagataattttctaacc
tttttttatatttttttatatttttcgtaCATAGTGCCGTATTAAATTTG
TTTAATCGACGAAATATTAATCTAATTCATT
Run BLAST on NCBI

transcript from alignment at sc0000363:211690..216856+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020683 ID=TCONS_00020683|Name=TCONS_00020683|organism=Clytia hemisphaerica|type=transcript|length=5167bp|location=Sequence derived from alignment at sc0000363:211690..216856+ (Clytia hemisphaerica)
TTCACAGCTTACAGGCCAACCAACTGTGCTCTACTATGCACCAGTATTAT
TCAAACGATTAGGATTTAACATGAACACGTCTGCTACGCTAGCTACAATC
GGTCTTGGCATTGTTAAggtaaaaaaatatgtaatttcatcatttttcct
TTAACCTGCGTTACTGCACTGAAGCAAATGTGTTAGTGGCCACTGGAAAT
TTtctacatattttttataagaatcagtaacATTTGGCTGAGCCCTGACC
tgttattttttttgtgttttttcctATTAACTTAACCCATTTTATGAACG
GGAAAAAGGTTTTCATATCAATAATATTCAGTCATTACTGGAATCTGATG
CTCCGGCTTTGGTTAAAATTATGTCCTGTGTTCTTACgaaactattctta
taaaagatcaAGCACTTAGGAATCGTTAGAAACGAGCAAAATTATTTGGA
TAAGAATTTCTCAAAACACATCCAGGATGTAGTACTGTAAACTGTTTAAA
CATTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAAACATG
TTCCACTTGAGGGTGGAGGGACAATGTTTTTATATCTCTCTTAATATGAA
TAAAAACATAATCTTTTCTTGTCTTTTAGAGTTATAGTTTTCTTGATTTG
TTTTCGAGTAAAGATAACATGCGTATGAGAATGATGATTGGGTGCAGTGT
CATACTTTTCCAACAGGTATTTATCATATAATCCTCCACAATTATTTGTT
TCCTTTGTCTGGNTTCAAGCTTAATGTTGAAAACGCTTTGTCCCACAATA
TATCCGTTTCGAGGAGAGGGCTaggaaattcttttttattgttcttcTTT
TTACATAGGCCATTTCACGTTTGCAATACCAGGATTAACGGTCGTAGTTA
GATAGTCGTAGTTCTGATCACCCATGATTCCTTGCGACCGTGAAATAGCC
TACAACGATATGGTATCTGCTCTAGTTGAATAAAAAGTATCGGCGTCATT
AGCCTCTGTGTTCAATTGAGACGAGTACAATAAAACTGGTTCCAAAATGA
ATATATAATGATGAATAAACTTAGGGGGAGGTGAAGCTCTTATTGTTCTT
GAGTTCCGTAGATTTAACAAATCTTTTGTTTCAATGCTATTATTTTCTAA
TTCACAGCTTACAGGCCAACCAACTGTGCTCTACTATGCACCAGTATTAT
TCAAACGATTAGGATTTAACATGAACACTTCTGCTACGCTTGCTACAATC
GGTCTTGGCATTGTTAAggtaaaaaatgtgtaatttcatcatttttcctT
TAACCTGCGTTACTGCACTGAAGCAAATGTGTTAGTGTCCTATATAGTCA
CCTGACTATGTTGTTTGACctcaaaaatttcaagtttagtTAACCTCATT
GCAAAGAATCTAGCTTAATGCGCATTTTGTTCTTTATACTTTCCTAAAAG
CATTTCTCTTTACTGGACATTCTAATTCTACCTTCATCCAAGGTTATAGA
TGAAagttttttaacaaatattcgAAATGGTATCAGTGATCTTTCTGATG
CCATGTTTGTGCCTCGAAAAAAGGAAACATGccactgaaaatttttatac
atattttttataagaatcagtaacATTTGGCTGAGCCCTGAcctgttatt
tttttttgtgttttttcctATTAACTTAACCCATTTTATGAACGGGAAAA
AGGTTTTCATATCAATAATATTCAGTCATTACTGGAATCTGATGCTCCGG
CTTTGGTTAAAATTATGTCCTGTGTTCTTACgaaactattcttataaaag
atcaAGCACTTAGGAATCGTTAGAAACGAGCAAAATTATTTGGATAAGAA
TTTCTCAAAACACATCCAGGATGTAGTACTGTAAACTgtttaaacatttt
aaaattttaattcaatttcTTAGGTTGTATTCACGATGGGGACATTACTC
TCTGTTGATAAATTAGGTGAGAACTTTAATCTTAACATAGATTTATTGGA
CAGAAAAAACTTTACTAATAGAAAGCTACCTACCTGGATGTCGGAAACTT
TTAGTGTTGAATAGcttatttttttaatgttctCTCCTCTCCTCTCCAGA
CGAAGGTCTTATCCAGTAATATTAATGCTCAGTCGGGATGTGAGTGagta
gattgggtaatctgatctcaGTGATAAATAGCTGTTACACTCCATCTAAG
AATTCCACCACCCTGGTCAAATGGAAACAAAAAAAAGGATTTGGATAAAC
TCTCTCACTTCAAGTTTCGCCGGTAGTCACTAAAAGAccaaatttgttta
cattttaggTCGACGAAAGTTTCTACTTGTTGGTGCTACGATAATGACAA
TCAGTTTGATCACCTTAAGTGCTGTCACTGAACCTTTCCAAAATGGTAAC
GAACAGCCTGCGTGTCATGATTATATTGGAACGCAAAAAGTTCATTCCCA
TCTCTTAAACGTTGATAATAACAACAATCGAAATTGTACGATAGAACATT
TCAATAACACTATTATAGAtggtataaaaaataaaacacttaCACACAAA
AAGCTTGGGAATAGCAGTAGTATTATAAAAAAGACATTATGTAGGAATTC
AACGAAAAACAAAACTAATTTACGGACTGATCATGACAATGATGACAACG
ATGCAATGGGTTCAATTCctgggtctgtaaaatacacatgttTATTTGCC
TTGATGTTATTCGTGATTGGATATGCAGTTGGTTATGGCCCAAGTGAGTG
ATTTTAACTCTTGAGATATTCATTCCTTTAGTATTAAGCTTTTAAGACTT
CTAAGAGTTTTTGATCTTCTGAAAAGCTAACGAAAAAGACCTCCCATACA
CACATTTTGAACATTTGAACgatgtttaaaatttgaaaaatagccAATAA
TTTAAACCTCGACCAACACGTTTTCTGGTCCTTTGAATCAATAGACTCTT
CTTTCTTAGACTTCTTATAGACAATTCTATTTAAAAAAGCTCGAGAAAAT
TTGCAATACTCGTACATGTTTAACTCCACTATAAATTTTTTACTGCGTCT
CACATATTTATTCCATTTTAAAGATAATGAAGTTCTAAAtggtttttctt
tcttattttcagtGTCATGGTTGATATTGACGGAGATTTTTCCGACAGCC
ATCAAAGGTCGTGCAGCATCGGTAGCAACAAGCGTCAATTGGGGAACGAA
TATCGTTATTTCGCTTACTTTTCTCGATGTTTTGGGTAAGTTGAAGAGGC
ATAATTACTTGTTAGCAACAGTAGATGTTGGCTCAGGCTCGACATGATTG
TTACTCAGGGGTCAGGAACACTGAAATATCTTATTGTTATATCGCCACTC
TTTAAGAAATCGAAGAATTTGAGAAGGCGAAACCTAAGGTTTCGTTGGAG
ACATAATCATCCTGGATCATCAACTAAAGTATCAATCAGTGTTGAAAATC
AAATGCGTTAGATGATTTTGATGATCGGAAAATTCACTTTGCTATTTGCT
TAATAAAATCTTGTACATACCATAATTTTTCATTCCTTTTTCAGGTTCAT
TGGGtccatttttaacatttttatgtTACTCCGTTATCGGAGTGGTTTCT
ATTATCTTCTTATATCATATCGTCCCCGAAACGAAAGGAAAATCGTTAGA
AGAAATTTCAGAACATCTCAATGAGAGGTCAGTGTACCACTGTTACTAAA
TTCTTGATAATcgagaaaaaatttcatttccgaGAAGGTTCTGATTACTC
CGCCCTGGAACGTATGTATTCTAAAAGCCATGGTTCCGCAAGAGTCACAT
ATACCAAATCATTGTAGCGCAGATCGTTTTATGTGCAGAATCGATGTTCA
AAAAAGGCTTAGTTAGGGTAAATCAAGATTAAGGAATACTATCTTTATGT
ACAGTATAAATGAACCCAAGGTTTTCCATATTCGAAGTGGTTGGGGTTTT
AATATCTATCCAACACTTGTTAAAGGAACAGTAGACTCAACAGCAACATT
TTACATCATTTGAAACTTGCTCACCTGCCTGCCACATTTAGCCAAAAACC
AATAATTTTGACTAAATTTGATTTGATGGGATAAGAAAGATTTCTAGCTA
ACTCTAGTTTTGTTCTTTAAAGTTTCTGGTTGCTTTGTTTTTTAGGCGTG
TCAAATGTAGTACAGTTCGATGTTGTGCTGAAGGACAAATGATTTACGTT
CAAGATGATGAAGGTGATATTCTCTTGAATGACAACGAGGCTGAGGATAT
CATGTGATTGTGGACACGAGGCTGAGGATATCATGTGAGTTTTGACACGA
GGCTGATGATATCATGTGATTTTGGACACGAGGCTGAGGATATCATGTGA
TTTTGGACACGAGGCTGAGGATATCATGTGATATCGGACACGAGGATGTT
AAAAGCATTTATTTTATatggtacacgcttttttttagaagaatagtgta
ctttggctgagggtacgagcattatttttatttttctattgttctaaaca
ataggcttAGTCTAACTCTGAAATCTCACCTTAATATATCTATAGAagtt
tttcatataaaaaaaatgcgtgtatttcattttaagaaatttttttttag
atatttgaattttattcaaaGCTTTTCTCGATTCGTCAAAGATCACAAAC
TGTACTGTACTTTTGAATTCAACTCAACATGTAAATAAATGTTTTGAGCC
CCCCCCCTCCTACAGATATCAATTTCCTAAAATTCTCTTAATTCAAGatt
caatgttttcaaaaaaatatcttggaatttttttttttttgttttctttg
tcgAGTTGAGTGAGCTGGATGGTATGACGTTAGTAACAAAATTGACTTAT
TTCTATGCATGAGCACCTATTTAAAATATTATCTTTCCCTTTAATATTTG
TGGTATtaagatttttaggattttaattttatattattCTACAGGATTCC
TGTTAATGTGTTTAgtttttagataattttctaacctttttttatatttt
tttatatttttcgtaCATAGTGCCGTATTAAATTTGTTTAATCGACGAAA
TATTAATCTAATTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011600XLOC_011600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020683-exon-sc0000363-1491911889:211690..211807TCONS_00020683-exon-sc0000363-1491911889:211690..211807Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1510915933:211690..211807TCONS_00020683-exon-sc0000363-1510915933:211690..211807Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1575043694:211690..211807TCONS_00020683-exon-sc0000363-1575043694:211690..211807Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1491911889:213713..213755TCONS_00020683-exon-sc0000363-1491911889:213713..213755Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1510915933:213713..213755TCONS_00020683-exon-sc0000363-1510915933:213713..213755Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1575043694:213713..213755TCONS_00020683-exon-sc0000363-1575043694:213713..213755Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1491911889:214098..214532TCONS_00020683-exon-sc0000363-1491911889:214098..214532Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1510915933:214098..214532TCONS_00020683-exon-sc0000363-1510915933:214098..214532Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1575043694:214098..214532TCONS_00020683-exon-sc0000363-1575043694:214098..214532Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1491911889:214902..215024TCONS_00020683-exon-sc0000363-1491911889:214902..215024Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1510915933:214902..215024TCONS_00020683-exon-sc0000363-1510915933:214902..215024Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1575043694:214902..215024TCONS_00020683-exon-sc0000363-1575043694:214902..215024Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1491911889:215334..215466TCONS_00020683-exon-sc0000363-1491911889:215334..215466Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1510915933:215334..215466TCONS_00020683-exon-sc0000363-1510915933:215334..215466Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1575043694:215334..215466TCONS_00020683-exon-sc0000363-1575043694:215334..215466Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1491911889:215935..216059TCONS_00020683-exon-sc0000363-1491911889:215935..216059Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1510915933:215935..216059TCONS_00020683-exon-sc0000363-1510915933:215935..216059Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1575043694:215935..216059TCONS_00020683-exon-sc0000363-1575043694:215935..216059Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1491911889:216153..216856TCONS_00020683-exon-sc0000363-1491911889:216153..216856Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1510915933:216153..216856TCONS_00020683-exon-sc0000363-1510915933:216153..216856Clytia hemisphaericaexon
TCONS_00020683-exon-sc0000363-1575043694:216153..216856TCONS_00020683-exon-sc0000363-1575043694:216153..216856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:211690..216856 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.109621	0.167371	0.4401	0	0	0	0	1.22166	0.981763	0.670389	1.26976	0.999264	0.569778	0.727257	0.498487	1.15888	1.05453	0.496301	0.34359	0.778079	1.0697	0.818697	0.642617	0	0	0.663259	0.727825	1.60518	1.53471
Blast
[Close]
BLAST of TCONS_00020683 vs. Swiss-Prot (Human)
Match: GTR10 (Solute carrier family 2, facilitated glucose transporter member 10 OS=Homo sapiens GN=SLC2A10 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.147e-46
Identity = 106/292 (36.30%), Postives = 156/292 (53.42%), Query Frame = 2 
Query:    5 QLTGQPTVLYYAPVLFKRLGFNMNTSATLATIGLGIVKVVFTMGTLLSVDKLGRRKFLLVGATIMTISL--ITLSAVTEPFQNGNEQPACHDYIGTQKV--HSHLLXXXXXXXXXCTIEHFNNTIIDGIKNKTLTHKKLGNSSSIIKKTLCRNSTKNKTNLRTDHDNDDNDAMGSIPGSVKYTCLFALMLFVIGYAVGYGPMSWLILTEIFPTAIKGRAASVATSVNWGTNIVISLTFLDVLGSLGPFLTFLCYSVIGVVSIIFLYHIVPETKGKSLEEISEHLNERRVKCS 868
            QLTGQP VL YA  +F  +GF+  +SA LA++GLG VKV  T+  +  VD+ GRR  LL G  +M +S+  I L +   P  +G    A  +  G   +   S LL   +      T E     I+   K KT  H + G+ S+  +  L           R         A+      +++T L  LM+FV  ++ G+GP++WL+L+EI+P  I+GRA +   S NW  N+ ISL+FLD++G++G   TFL Y +  V+ + F+Y  VPETKG+SL EI +   +RR   S
Sbjct:  243 QLTGQPNVLCYASTIFSSVGFHGGSSAVLASVGLGAVKVAATLTAMGLVDRAGRRALLLAGCALMALSVSGIGLVSFAVPMDSGPSCLAVPNATGQTGLPGDSGLLQDSSLPPIPRTNEDQREPILSTAK-KTKPHPRSGDPSAPPRLALSSALPGPPLPAR-------GHAL------LRWTALLCLMVFVSAFSFGFGPVTWLVLSEIYPVEIRGRAFAFCNSFNWAANLFISLSFLDLIGTIGLSWTFLLYGLTAVLGLGFIYLFVPETKGQSLAEIDQQFQKRRFTLS 520
The following BLAST results are available for this feature:
BLAST of TCONS_00020683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GTR101.147e-4636.30Solute carrier family 2, facilitated glucose trans... [more]
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