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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020387 ID=TCONS_00020387|Name=TCONS_00020387|organism=Clytia hemisphaerica|type=transcript|length=4557bpRun BLAST on NCBI protein sequence of TCONS_00020387-protein >TCONS_00020387-protein ID=TCONS_00020387-protein|Name=TCONS_00020387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1341bp MASMRRTSSIDKTKTRVKHNRSSSQNSSVDDLLKVSSVSPQRNDKGSKTKRun BLAST on NCBI transcript from alignment at sc0000355:273946..316828- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020387 ID=TCONS_00020387|Name=TCONS_00020387|organism=Clytia hemisphaerica|type=transcript|length=42883bp|location=Sequence derived from alignment at sc0000355:273946..316828- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000355:273946..316828- >TCONS_00020387 ID=TCONS_00020387|Name=TCONS_00020387|organism=Clytia hemisphaerica|type=CDS|length=80520bp|location=Sequence derived from alignment at sc0000355:273946..316828- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020387 vs. Swiss-Prot (Human)
Match: CP131 (Centrosomal protein of 131 kDa OS=Homo sapiens GN=CEP131 PE=1 SV=3) HSP 1 Score: 311.612 bits (797), Expect = 9.403e-88 Identity = 262/619 (42.33%), Postives = 395/619 (63.81%), Query Frame = 1
Query: 2305 PSLGSTLLSADKLQSIMSFLDEVERTEDDVRSEVXXXXXXXXXXXXQLTLISQPPHDETSTTLLDDEKQSIYKPNKYDDLNIDSASQVASDITDAINAQRMEMDEKERTLGMMKKAMNQQKDFTTMQLKEMDKEHKKQLHIQRDDYEGTIKRHLSFIDQLIDDKKVLTKRCEELVSKLKDIDQKYTAKIKQITDSHTIEMKKQKEIMEAAXXXXXXXXXXXXTHEIKEITVKGLEPDIQXXXXXXXXXXXXXXXXXQGEILEADERVGRKYIQQLDELRMQLEKEKEMAVRKERDIAXXXXXXXXXXXXXXXXXXXXXXLKEVEDEKERLAEQTQRMKSDFDEKKSAYEITLRQTLTHASTDHDKQLNHLRDK--------HLSEMQTLKEQLDIERQQWIENYMKKQETVLLAKERELKEGVRESRDKEIEMVIXXXXXXXXXXXXXXXXXXXNRTKRIRDKYETEIKELEHSERHIQEKCKSLKERVEELENDCIRLKSERKSKDQELIDNQKLTSRLQEERGKVTDIIRQEFADRLVIXXXXXXXXXXXXXXXXARHKFDVEKVTNAKEEELEEVHKRVKKAIMKKEETTQLLRDQMMAAEKRAEHLEQLLAEQRK 4137
P TLLS KLQSIMSFLDE+E++ D QL D +Q + P ++ S+++ ++ ++E++EK++ + ++++A+ QQ+D T ++KE +K +QL QR+ YE TI+RHL+FIDQLI+DKKVL+++CE +V++LK DQ+ T ++ Q H +E+KK KE+M A EK RREKWI EKT +IKE+TV+GLEP+IQKLIA+HK E++++K++ + E+L++DER ++ ++Q +ELR QLE+EKE ++ER+ ARQRF+ L +E+ + QQQR+RL EV +E+ERL +Q R +++ +E LRQ L +S+ + L +K H E+ TLK+QL++ERQ W +K+E LL +E+EL+E +R+ RDKEIE+VI RLE + A A+EESE+A+E+R KR+RDKYE E+ ELE SER +QE+C LK ++ E E + +RL+ + K++ L D Q + +L ER + +IRQEF DRL EEE+++ ++EL+ +AR + ELEEVH+RVK A+ +KEE LR Q AA KRA+HLE+LL + R+
Sbjct: 517 PPEDGTLLSEAKLQSIMSFLDEMEKSGQD-----------------QL-----------------DSQQEGWVPEAGP-----GPLELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEE--------LRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQL-----------ELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1077 The following BLAST results are available for this feature:
BLAST of TCONS_00020387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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