TCONS_00020326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020326
Unique NameTCONS_00020326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length816

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020326 ID=TCONS_00020326|Name=TCONS_00020326|organism=Clytia hemisphaerica|type=transcript|length=816bp
CTAGacaaaaaagatattttcaacCAATGCAACGATATGGTGGCAAATTT
CAAATCATCAATCGATGGCAAAATCACTGAACTCGAAGAAAAACATTCTC
tacaaagaaaacttttgtTCAAAGATTATTACGGATATAGTGCTATAGAT
CATCATGCGCGCCACGGGGATAAATTACTGAAAAGGCGAAATACAGTTCA
TCCAGTAAGTCCAAAAAAGGAAGATCAACAGGATGAATATGAATTAGATC
TGGAAGGCGGAAGAAATCTCTCTGCTCACGTTGATAAACCAAGAACGCCC
TTCACTGAAGGAGATTTCGATGTAGGTCAATTAGAACAAATAGAAGAGAC
CGATATTCAGACGTTCGAAGTTGTCGAGTAAGATGAAGAAATTGAAAGCT
GAGTTATATCATCGTAACTAAGACAGTGGTTGGAAATACTTTGACATTGA
TGATGCATGATGATGATTGATGCAGGAGATTTACAAAAAGTGCAAAGGTT
CTTGGCAAAGCGAGAAAGTGAAACTTTAAACTGTTTGCTTTGGTTCGTTA
TTCTCAGGCATTatttgaaaacacaactttgATAAGTAAACAAAGGAGGA
GAAGCGAGTCGGCTTTTGTAAAAAGTATATTCGATAAAGCCGATCAGCGC
TTGTCGTTGAAactaatgggccattccattaaatttccatggAACGATGG
ACGAACATTTTTAAGGTAAGTCCTTGAAAATGGCaagatttgcaaaaaaa
aaacccttggGAGAATTCTTTTCGTACCTTAAAATGACGTTGGACAAACT
AGAATCTATTTCTTAC
Run BLAST on NCBI

protein sequence of TCONS_00020326-protein

>TCONS_00020326-protein ID=TCONS_00020326-protein|Name=TCONS_00020326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
LDKKDIFNQCNDMVANFKSSIDGKITELEEKHSLQRKLLFKDYYGYSAID
HHARHGDKLLKRRNTVHPVSPKKEDQQDEYELDLEGGRNLSAHVDKPRTP
FTEGDFDVGQLEQIEETDIQTFEVVE
Run BLAST on NCBI

transcript from alignment at sc0000351:262332..263147

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020326 ID=TCONS_00020326|Name=TCONS_00020326|organism=Clytia hemisphaerica|type=transcript|length=816bp|location=Sequence derived from alignment at sc0000351:262332..263147 (Clytia hemisphaerica)
GTAAGAAATAGATTCTAGTTTGTCCAACGTCATTTTAAGGTACGAAAAGA
ATTCTCccaagggttttttttttgcaaatcttGCCATTTTCAAGGACTTA
CCTTAAAAATGTTCGTCCATCGTTccatggaaatttaatggaatggccca
ttagtTTCAACGACAAGCGCTGATCGGCTTTATCGAATATACTTTTTACA
AAAGCCGACTCGCTTCTCCTCCTTTGTTTACTTATcaaagttgtgttttc
aaatAATGCCTGAGAATAACGAACCAAAGCAAACAGTTTAAAGTTTCACT
TTCTCGCTTTGCCAAGAACCTTTGCACTTTTTGTAAATCTCCTGCATCAA
TCATCATCATGCATCATCAATGTCAAAGTATTTCCAACCACTGTCTTAGT
TACGATGATATAACTCAGCTTTCAATTTCTTCATCTTACTCGACAACTTC
GAACGTCTGAATATCGGTCTCTTCTATTTGTTCTAATTGACCTACATCGA
AATCTCCTTCAGTGAAGGGCGTTCTTGGTTTATCAACGTGAGCAGAGAGA
TTTCTTCCGCCTTCCAGATCTAATTCATATTCATCCTGTTGATCTTCCTT
TTTTGGACTTACTGGATGAACTGTATTTCGCCTTTTCAGTAATTTATCCC
CGTGGCGCGCATGATGATCTATAGCACTATATCCGTAATAATCTTTGAac
aaaagttttctttgtaGAGAATGTTTTTCTTCGAGTTCAGTGATTTTGCC
ATCGATTGATGATTTGAAATTTGCCACCATATCGTTGCATTGgttgaaaa
tatcttttttgtCTAG

Coding sequence (CDS) from alignment at sc0000351:262332..263147

>TCONS_00020326 ID=TCONS_00020326|Name=TCONS_00020326|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000351:262332..263147 (Clytia hemisphaerica)
TTACTCGACAACTTCGAACGTCTGAATATCGGTCTCTTCTATTTGTTCTA
ATTGACCTACATCGAAATCTCCTTCAGTGAAGGGCGTTCTTGGTTTATCA
ACGTGAGCAGAGAGATTTCTTCCGCCTTCCAGATCTAATTCATATTCATC
CTGTTGATCTTCCTTTTTTGGACTTACTGGATGAACTGTATTTCGCCTTT
TCAGTAATTTATCCCCGTGGCGCGCATGATGATCTATAGCACTATATCCG
TAATAATCTTTGAacaaaagttttctttgtaGAGAATGTTTTTCTTCGAG
TTCAGTGATTTTGCCATCGATTGATGATTTGAAATTTGCCACCATATCGT
TGCATTGgttgaaaatatcttttttgtCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011413XLOC_011413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020326-exon-sc0000351-1491911889:262332..263147TCONS_00020326-exon-sc0000351-1491911889:262332..263147Clytia hemisphaericaexon
TCONS_00020326-exon-sc0000351-1510915933:262332..263147TCONS_00020326-exon-sc0000351-1510915933:262332..263147Clytia hemisphaericaexon
TCONS_00020326-exon-sc0000351-1575043694:262332..263147TCONS_00020326-exon-sc0000351-1575043694:262332..263147Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020326-proteinTCONS_00020326-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:262332..263147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.193512	0.189165	0.0789217	0.194233	0.07882	0.0622846	0.150287	0	0.295516	0.122015	0.0728688	0.0389258	0.0777434	0.0403687	0.0516426	0	0.0637672	0.198681	0.270409	0.389864	0.631686	0.552291	0.278001	0.598044	4.46506	5.88581	0	0	0.194617	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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