TCONS_00020145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020145
Unique NameTCONS_00020145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020145 ID=TCONS_00020145|Name=TCONS_00020145|organism=Clytia hemisphaerica|type=transcript|length=312bp
gcctACTAGAGTGTCAACAGCTCATTCTCTTTTTTGAGTAGATAAAGTTA
GattacaaaataatttaaaagcAACTGGTGGAAGCAGCTTCAATATATTG
CAATAAAGAAATAACTAAAAGTTGATTCTGAAAATCTTTCCACAAAACTA
ATGTCTACTCAATAAGATCAGGGAAATAATGactaaaaatctgaaaaaaa
aactgaacaTTTTATCAAGGCTCATCAGAGACNaaaatgcaaaataaaaa
agtattttaaagaaaaataataatactgCACTGTCTCTAAAATGACCCAT
TATTTAAATTGC
Run BLAST on NCBI

transcript from alignment at sc0000349:189575..189886

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020145 ID=TCONS_00020145|Name=TCONS_00020145|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at sc0000349:189575..189886 (Clytia hemisphaerica)
GCAATTTAAATAATGGGTCATTTTAGAGACAGTGcagtattattattttt
ctttaaaatacttttttattttgcattttNGTCTCTGATGAGCCTTGATA
AAAtgttcagtttttttttcagatttttagtCATTATTTCCCTGATCTTA
TTGAGTAGACATTAGTTTTGTGGAAAGATTTTCAGAATCAACTTTTAGTT
ATTTCTTTATTGCAATATATTGAAGCTGCTTCCACCAGTTgcttttaaat
tattttgtaatCTAACTTTATCTACTCAAAAAAGAGAATGAGCTGTTGAC
ACTCTAGTaggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011318XLOC_011318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020145-exon-sc0000349-1491911889:189575..189886TCONS_00020145-exon-sc0000349-1491911889:189575..189886Clytia hemisphaericaexon
TCONS_00020145-exon-sc0000349-1510915933:189575..189886TCONS_00020145-exon-sc0000349-1510915933:189575..189886Clytia hemisphaericaexon
TCONS_00020145-exon-sc0000349-1575043694:189575..189886TCONS_00020145-exon-sc0000349-1575043694:189575..189886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:189575..189886 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344327	0.335773	0.389865	0	0.464345	0	0.442687	0.828877	0.870474	0.359408	0	0.22932	0.458003	0	0.391041	0.209823	0	0	0	0	0.66583	0.974306	0.394799	0.35893	1.47876	1.31975	0.472141	0	0.382177	1.16813
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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