TCONS_00020010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020010
Unique NameTCONS_00020010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1000

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020010 ID=TCONS_00020010|Name=TCONS_00020010|organism=Clytia hemisphaerica|type=transcript|length=1000bp
ATCCCGTAGCGTTCTAGTTTCATCATAAGTCTTCGATGGGGTACCGTGTC
AAATGCCTTGGCAAAGTCGAAGTATATGCAGTCGACCACTTCACTTTTTG
CTGTTGATTCGCAACACATATCTATAAAGGAGATAAGCTGTGTGACTGTT
GACCTTTTGTTGATGAAACCGTATTGTTTGTTCGATAGAAGCTTTTCGCT
GATAAGGTGTTCCGTGATATGTTTTCGTATCATTGTTTCCATCAACTTAC
AGACTACTGAAGTTAGACTTACGGGGCGATAGTTAATAGCAAGGTTGTGt
gctcctttgtttttatagaTTGGTGTCACATATGCTAGTTTCCAGTCACT
AGGTAAGTTTCCTTCctcgactagaagcttcttccaacgccttttttctt
cacctaaaatcgtaaggagagacatacagatttctgtatgtctgacccgt
gcgggattgcatttatttttctttctgtttattgagTTATTAGAAatact
catttatttatatgttcccatgttcaatgttactatgaaatattatttag
tcaaaaaagttggatggattcttaaaaacctaaaaaagttgtaaaattaa
acaacgttttttgagggaagtagcttctagtcgttgaaattcagaaaaga
gacgcaacttcaacttcaccccttcgattctttttatttggagcttgatt
ttttgtgtatgggtctgttttcaacgactagtttactagtctatggTTGA
AGTATTTTATCTGTTTTGTTGTCAAAATCAGGTAGATCACCTTCCGGTTC
TTTAGTAAAGACACTGCAAAATTGTTTCTGCAGGATGTTGGCCTTTTCTT
GGTCCTCGTGCTTTAGGGATGTCTTGTCATCGGACGTTTCAAGAAGAGAG
GAAActccactttttgatttaagTTTGCCTCTGACATGTGACCAGAACGC
TTTTGGGTTTCTCTTTGAGTTTTCACCGATGGCTAGATCGTATTCTCTTT
Run BLAST on NCBI

protein sequence of TCONS_00020010-protein

>TCONS_00020010-protein ID=TCONS_00020010-protein|Name=TCONS_00020010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MSISNNSINRKKNKCNPARVRHTEICMSLLTILGEEKRRWKKLLVEEGNL
PSDWKLAYVTPIYKNKGAHNLAINYRPVSLTSVVCKLMETMIRKHITEHL
ISEKLLSNKQYGFINKRSTVTQLISFIDMCCESTAKSEVVDCIYFDFAKA
FDTVPHRRLMMKLERYG
Run BLAST on NCBI

transcript from alignment at sc0000345:190265..191264

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020010 ID=TCONS_00020010|Name=TCONS_00020010|organism=Clytia hemisphaerica|type=transcript|length=1000bp|location=Sequence derived from alignment at sc0000345:190265..191264 (Clytia hemisphaerica)
AAAGAGAATACGATCTAGCCATCGGTGAAAACTCAAAGAGAAACCCAAAA
GCGTTCTGGTCACATGTCAGAGGCAAActtaaatcaaaaagtggagTTTC
CTCTCTTCTTGAAACGTCCGATGACAAGACATCCCTAAAGCACGAGGACC
AAGAAAAGGCCAACATCCTGCAGAAACAATTTTGCAGTGTCTTTACTAAA
GAACCGGAAGGTGATCTACCTGATTTTGACAACAAAACAGATAAAATACT
TCAAccatagactagtaaactagtcgttgaaaacagacccatacacaaaa
aatcaagctccaaataaaaagaatcgaaggggtgaagttgaagttgcgtc
tcttttctgaatttcaacgactagaagctacttccctcaaaaaacgttgt
ttaattttacaacttttttaggtttttaagaatccatccaacttttttga
ctaaataatatttcatagtaacattgaacatgggaacatataaataaatg
agtatTTCTAATAActcaataaacagaaagaaaaataaatgcaatcccgc
acgggtcagacatacagaaatctgtatgtctctccttacgattttaggtg
aagaaaaaaggcgttggaagaagcttctagtcgagGAAGGAAACTTACCT
AGTGACTGGAAACTAGCATATGTGACACCAAtctataaaaacaaaggagc
aCACAACCTTGCTATTAACTATCGCCCCGTAAGTCTAACTTCAGTAGTCT
GTAAGTTGATGGAAACAATGATACGAAAACATATCACGGAACACCTTATC
AGCGAAAAGCTTCTATCGAACAAACAATACGGTTTCATCAACAAAAGGTC
AACAGTCACACAGCTTATCTCCTTTATAGATATGTGTTGCGAATCAACAG
CAAAAAGTGAAGTGGTCGACTGCATATACTTCGACTTTGCCAAGGCATTT
GACACGGTACCCCATCGAAGACTTATGATGAAACTAGAACGCTACGGGAT

Coding sequence (CDS) from alignment at sc0000345:190265..191264

>TCONS_00020010 ID=TCONS_00020010|Name=TCONS_00020010|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0000345:190265..191264 (Clytia hemisphaerica)
atgagtatTTCTAATAActcaataaacagaaagaaaaataaatgcaatcc
cgcacgggtcagacatacagaaatctgtatgtctctccttacgattttag
gtgaagaaaaaaggcgttggaagaagcttctagtcgagGAAGGAAACTTA
CCTAGTGACTGGAAACTAGCATATGTGACACCAAtctataaaaacaaagg
agcaCACAACCTTGCTATTAACTATCGCCCCGTAAGTCTAACTTCAGTAG
TCTGTAAGTTGATGGAAACAATGATACGAAAACATATCACGGAACACCTT
ATCAGCGAAAAGCTTCTATCGAACAAACAATACGGTTTCATCAACAAAAG
GTCAACAGTCACACAGCTTATCTCCTTTATAGATATGTGTTGCGAATCAA
CAGCAAAAAGTGAAGTGGTCGACTGCATATACTTCGACTTTGCCAAGGCA
TTTGACACGGTACCCCATCGAAGACTTATGATGAAACTAGAACGCTACGG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011242XLOC_011242Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020010-proteinTCONS_00020010-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020010-exon-sc0000345-1491911889:190265..191264TCONS_00020010-exon-sc0000345-1491911889:190265..191264Clytia hemisphaericaexon
TCONS_00020010-exon-sc0000345-1510915933:190265..191264TCONS_00020010-exon-sc0000345-1510915933:190265..191264Clytia hemisphaericaexon
TCONS_00020010-exon-sc0000345-1575043694:190265..191264TCONS_00020010-exon-sc0000345-1575043694:190265..191264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:190265..191264 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98036	2.61755	4.88204	6.63648	6.66134	5.62577	5.37145	6.20197	4.32434	4.64335	3.30054	4.12533	4.76748	5.90864	3.96896	4.55251	2.9939	2.56971	2.3502	3.08583	4.27598	4.39248	1.69501	2.87662	2.97375	4.78785	3.35156	3.4445	3.33921	3.21776
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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