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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019786 ID=TCONS_00019786|Name=TCONS_00019786|organism=Clytia hemisphaerica|type=transcript|length=1715bp
CTGGGCTATTGCTATGTGCGGCCAATGCATTTGTTTTCTATGCTGCtcta
aagaaaacaaaacctttcacGGTAGACATTCTGGTTGGTTCTCTATGCTT
ACATTCCATTGTGTATTACATGGCTTATGGTATCCTTCTCATAATACAAA
AACTGACCAATTGGTCCCAAATAACACTCAAAGCTGGAGAATGCGTCGAT
TGTTATTTCGCGTTTTCATTTCCCATCATCCTCTCTGTGTTTTTTATCGA
TCGTTACCTAGCAACGTCGCATCCGTTGTTTTACAAATTGAGAGTGATCA
ATCGACATGCGTATATTGTTCTTTTCACGATCATCGTTTTATCCATCAGT
TTAACTGTTTTCACCATGGTTCGTAAACAGTTCACAATTGGTTCGGTTAC
CGTAAATTTCTCCTATTTCCTCTGTGTTTTCATAATTACAATAGCATCTT
TTGTTGTCATGGTGATTTGCTATATTTCGATATGCCgtgctttgttgttt
tttgcgGGACGTCAAATGTACATATTTGGTAACGAAGCGATGTTTCGGAA
AACCTTACCTACCATTGTTGAAAATACACATACCGACTCTACTGAGGACT
CTACGGAGATAAATGTTTCTAATAATGAAactgaaaattctaaaagtgaG
TCAGAATCGATACCGCCACCACAAGTAGTCGTAAAAGAAAAACTGTGTCG
GAAAAAAAGTTCATTGCCCACTGTCCTTCGTGAGAAGTCAGTAACTTTAT
CTGGAGACGATAAGAAAAACTTTCTAGCAGCTCGAGCTGCTAGATATTCA
TGTCCTATTTGCGTGGAATCGAAATATCAACCGGATTTGCCATTATGGCT
GATTGCATCATTGAGCAACGAGTTGAAAGAAGTCCATCATGTACAACGAC
CACGTGCTCAAACACTTCCTGTCAAACCGCAAGAGAATCAGGTTCAAGAG
AACCAACCGTGTAGGAAACGGGCGTCCACAATTGACCAATTAGCATCCAA
TAAAGAGTTTGGACGGTTTCCACGAGCTCGAACTTATACCATGTGTAACG
TTGTCGTAAATCTAATAGCGACACGTCGGAAAAAAGAAACTGACAGAGGG
TTGAGACTTTCACAAGCACGTCATCTTGTACAAATATTAACTACCAAACT
AGTTTTCTACTTGTTTTGGTTACCCTTTCTTATTTATTCATTGATTTTGG
AAACGAAAGGATCTTTGTACAAGCAAAAGAGGGTTAACATCTCATTGGTA
TGGGATATGTTACACATTGCTCTTCATCTACACATGTTTTCGCCCACAAT
TTACGCGTTCGCCTGCCACCCGTATCGCGTGACTTTGAGGAGATGTTGGA
ACCGATCGGTCCGACGAATGATTCAACGAAGTCAAGAAACAATGTTTTAG
TATGGAGTTTTACAGATAGAACGCATCGTTTGTGGTTCAGACATAGACAT
CAATGATGTTTTTATTCTCATTTCTCATTTTCATAGAGAGCTTGTTATGA
CAATAAGATTAACTTTGGATAATAGCTTTATAAACAATACTCCCAGTATG
CAGCAAACGGAAGGATTTTCTAGGCTAATAGACATATATGGATACATAGT
GTTTATGTAAACAAAGCAGCATCATTTAATTATCAATAGCAAACATTACA
TGAATTTTTTTAGATCTTAAGAAAAAAGGGCAAGACcctcccaaaaaaaa
aacaaccatcGTCTA Run BLAST on NCBI transcript from alignment at sc0000336:279880..282584+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019786 ID=TCONS_00019786|Name=TCONS_00019786|organism=Clytia hemisphaerica|type=transcript|length=2705bp|location=Sequence derived from alignment at sc0000336:279880..282584+ (Clytia hemisphaerica)
CTGGGCTATTGCTATGTGCGGCCAATGCATTTGTTTTCTATGCTGCtcta
aagaaaacaaaacctttcacGGTAGACATTCTGGTTGGTTCTCTATGCTT
ACATTCCATTGTGTATTACATGGCTTATGGTATCCTTCTCATAATACAAA
AACTGACCAATTGGTCCCAAATAACACTCAAAGCTGGAGAATGCGTCGAT
TGTTATTTCGCGTTTTCATTTCCCATCATCCTCTCTGTGTTTTTTATCGA
TCGTTACCTAGCAACGTCGCATCCGTTGTTTTACAAATTGAGAGTGATCA
ATCGACATGCGTATATTGTTCTTTTCACGATCATCGTTTTATCCATCAGT
TTAACTGTTTTCACCATGGTTCGTAAACAGTTCACAATTGGTTCGGTTAC
CGTAAATTTCTCCTATTTCCTCTGTGTTTTCATAATTACAATAGCATCTT
TTGTTGTCATGGTGATTTGCTATATTTCGATATGCCgtgctttgttgttt
tttgcgGGACGTCAAATGTACATATTTGGTAACGAAGCGATGTTTCGGAA
AACCTTACCTACCATTGTTGAAAATACACATACCGACTCTACTGAGGACT
CTACGGAGATAAATGTTTCTAATAATGAAactgaaaattctaaaagtgaG
TCAGAATCGATACCGCCACCACAAGTAGTCGTAAAAGAAAAACTGTGTCG
GAAAAAAAGTTCATTGCCCACTGTCCTTCGTGAGAAGTCAGTAACTTTAT
CTGGAGACGATAAGAAAAACTTTCTAGCAGCTCGAGCTGCTAGATATTCA
TGTCCTATTTGCGTGGAATCGAAATATCAACCGGATTTGCCATTATGGCT
GATTGCATCATTGAGCAACGAGTTGAAAGAAGTCCATCATGTACAACGAC
CACGTGCTCAAACACTTCCTGTCAAACCGCAAGAGAATCAGGTTCAAGAG
AACCAACCGTGTAGGAAACGGGCGTCCACAATTGACCAATTAGCATCCAA
TAAAGAGTTTGGACGGTTTCCACGAGCTCGAACTTATACCATGTGTAACG
TTGTCGTAAATCTAATAGCGACACGTCGGAAAAAAGAAACTGACAGAGGG
TTGAGACTTTCACAAGCACGTCATCTTGTACAAATATTAACTACCAAACT
AGTTTTCTACTTGTTTTGGTTACCCTTTCTTGTAAGTGACTTCACGCGTC
TGATTATGTATTTGCAGTCACTAGGTGCCATCATACTAGGATTTATAGGA
TGGGTGCAATAGGATTTCCCCCGCCAAAAATCCTTTTGTATCCTTGAGAA
CCGTCATTTGCTCCCATCGGTTAGTTAGAATCGAAGATCTCAACAATTAA
TAGCAGTCTAAAGTCTAAAATCATTTGCCTTGTCAAATCgatttttggtt
ttaaaaaagtCCTAAACGAGCCAAATTCAAATCGGAAGACCTTGATAACG
GACTGATTAAAATCACCTTTTTTAGAAGAAAAAGTCCCGTGAATTCCATT
CCTTCAATCGGCTATAGCCAATTTTTCACGTCCACTTTTCTCAccaattt
tttgaagtttacgTTTTTCAGTATCCtttgaaaaattagaatttGCACTG
TTAATGCGATTCCTGGACTCCTGACGACGTCTAATGGcatgttcaagaaa
aaaattgtaccctGTGTTGAAGAGTtgctttttggaaaaaatgtttctct
ggattttttttaattgttcaggacccccttggatttctctttctcatttt
ttggtCCACCCTGGATTATCGACCTCGTTTTACTGCTcaaaagtaggttc
gaaggttagagttttaactctgagttttttaggaccttaggatctgagga
tccaaaagttcaaaaatagaccaataaggctcagaatatagcctggaagt
ctgccaacacctcccaaattgaaatatatgattaagttaaagagatcgcc
caaaatcaactttcttgccggaactttaaatcttgaaaaacgttaaaata
acgtgaattctcaatatatttcgaccatgattgtggatctttacactcga
aaaaccaAACCCCCTGGATTTTTAATTTCCCAGACCACCCTAGACGTcgc
acctcctcaacatagagGTTACAGACTATTTCTGAAATAGTCCAATGATA
GGGTTTTGTTTGTCTTTTCAGATTTATTCATTGATTTTGGAAACGAAAGG
ATCTTTGTACAAGCAAAAGAGGGTTAACATCTCATTGGTATGGGATATGT
TACACATTGCTCTTCATCTACACATGTTTTCGCCCACAATTTACGCGTTC
GCCTGCCACCCGTATCGCGTGACTTTGAGGAGATGTTGGAACCGATCGGT
CCGACGAATGATTCAACGAAGTCAAGAAACAATGTTTTAGTATGGAGTTT
TACAGATAGAACGCATCGTTTGTGGTTCAGACATAGACATCAATGATGTT
TTTATTCTCATTTCTCATTTTCATAGAGAGCTTGTTATGACAATAAGATT
AACTTTGGATAATAGCTTTATAAACAATACTCCCAGTATGCAGCAAACGG
AAGGATTTTCTAGGCTAATAGACATATATGGATACATAGTGTTTATGTAA
ACAAAGCAGCATCATTTAATTATCAATAGCAAACATTACATGAATTTTTT
TAGATCTTAAGAAAAAAGGGCAAGACcctcccaaaaaaaaaacaaccatc
GTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019786-exon-sc0000336-1491911889:279880..281060 | TCONS_00019786-exon-sc0000336-1491911889:279880..281060 | Clytia hemisphaerica | exon |
| TCONS_00019786-exon-sc0000336-1510915933:279880..281060 | TCONS_00019786-exon-sc0000336-1510915933:279880..281060 | Clytia hemisphaerica | exon |
| TCONS_00019786-exon-sc0000336-1575043694:279880..281060 | TCONS_00019786-exon-sc0000336-1575043694:279880..281060 | Clytia hemisphaerica | exon |
| TCONS_00019786-exon-sc0000336-1491911889:282051..282584 | TCONS_00019786-exon-sc0000336-1491911889:282051..282584 | Clytia hemisphaerica | exon |
| TCONS_00019786-exon-sc0000336-1510915933:282051..282584 | TCONS_00019786-exon-sc0000336-1510915933:282051..282584 | Clytia hemisphaerica | exon |
| TCONS_00019786-exon-sc0000336-1575043694:282051..282584 | TCONS_00019786-exon-sc0000336-1575043694:282051..282584 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000336 | supercontig | sc0000336:279880..282584 + |
Blast
The following BLAST results are available for this feature:
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