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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019807 ID=TCONS_00019807|Name=TCONS_00019807|organism=Clytia hemisphaerica|type=transcript|length=3068bpRun BLAST on NCBI protein sequence of TCONS_00019807-protein >TCONS_00019807-protein ID=TCONS_00019807-protein|Name=TCONS_00019807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=675bp MERIKEKLNPEKMVQNRPENATTEDGQNYVSLTDRINQKIKDNEKFFSLERun BLAST on NCBI transcript from alignment at sc0000336:207907..221369- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019807 ID=TCONS_00019807|Name=TCONS_00019807|organism=Clytia hemisphaerica|type=transcript|length=13463bp|location=Sequence derived from alignment at sc0000336:207907..221369- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000336:207907..221369- >TCONS_00019807 ID=TCONS_00019807|Name=TCONS_00019807|organism=Clytia hemisphaerica|type=CDS|length=20280bp|location=Sequence derived from alignment at sc0000336:207907..221369- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019807 vs. Swiss-Prot (Human)
Match: MTHR (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3) HSP 1 Score: 764.607 bits (1973), Expect = 0.000e+0 Identity = 364/608 (59.87%), Postives = 460/608 (75.66%), Query Frame = 1
Query: 373 DGQNYVSLTDRINQKIKDNEKFFSLEFFPPRTPNGAVNLIARFDRMSRGGPLFCDVTWHPAGDPAGDKETSSTTIASIAANYCGIQTMLHMTCANLTKETVVKNLTKAKNLGLRNILALRGDPVNGEEWKSFDDSLNYGSDLVKLIRQHFGSYFTICVAGYPNGHPDATSYEDDIIHLKEKVDAGADFIITQLFFKTEDHLKFVRDCRQAGITVPILPGVMPIQGYASLRQLVKLSKLEVPQEIMDVLEPMKNDDEAIRKYGVKQATEMCRELLQSDDVPGLHFYTLNREVATIEILRNVGLWKKYQIHRPLPWKHSAHTKRIKEDVRPIFWAIRPKSYVHRTSSWDEFPNGRWGNSSAPSFAELTDHHLFFLRSPKGKESRNKMWGNELESLQDVYHVFQCYLSGQKNKWGNKVTALPFNDEEIQTETSVLLEQLDRINGEGFLTINSQPNVNGVPSDNETFGWGGSGGYIYQKAYLEFFMPKKYIKALRLVLKDLP-QVNYHIIDNQGYVDDTNADRYQPIAVTWGVFPGKEIKQPTVVDPISFNFWKDEAFGLWKIQWQSLYEEGSASANVIESICNDFVLVNLVDNDFIKGNCLFDIIEKTIEI 2193
D + + L +++ ++++ +K+FSLEFFPPRT GAVNLI+RFDRM+ GGPL+ DVTWHPAGDP DKETSS IAS A NYCG++T+LHMTC E + +L KAK LGL+NI+ALRGDP+ G++W+ + NY DLVK IR FG YF ICVAGYP GHP+A S+E D+ HLKEKV AGADFIITQLFF+ + +FV+ C GIT PI+PG+ PIQGY SLRQLVKLSKLEVPQEI DV+EP+K++D AIR YG++ A +C+ELL S VPGLHFYTLNRE+AT E+L+ +G+W + RPLPW SAH KR +EDVRPIFWA RPKSY++RT WDEFPNGRWGNSS+P+F EL D++LF+L+S KE KMWG EL S + V+ VF YLSG+ N+ G+KVT LP+NDE + ETS+L E+L R+N +G LTINSQPN+NG PS + GWG SGGY++QKAYLEFF ++ +AL VLK +VNYH+++ +G + TNA QP AVTWG+FPG+EI QPTVVDP+SF FWKDEAF LW +W LYEE S S +I+ I +++ LVNLVDNDF NCL+ ++E T+E+
Sbjct: 38 DPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPI-GDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGMWTE-DPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGE-NITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVVEDTLEL 642 The following BLAST results are available for this feature:
BLAST of TCONS_00019807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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