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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019212 ID=TCONS_00019212|Name=TCONS_00019212|organism=Clytia hemisphaerica|type=transcript|length=3460bp
TTAGCCACCTTACTGCATGAACCACTAAAAGAATCGCTGCTCAACACCCT
TCATAATCACTACAATCGAACCGACTATGTTGGCCTCCCATCCAACCCAA
CCCTTCTCAACGCTGAGCTACgtaaacaccaaaatagaatcTACCAATTA
CAATCTAAAAGAGTTCTCAACAAGGACCAAGTTGAACTTTTACTACCTAC
CGGAAGTACGCAAACCGATAGTTCAACCTTTGATGTTACTTTAATCATCT
TTTTAATTATCGAGTTCACAAACCTACCTCCGCCCAGCAGAGGTTGGAAA
AAAGATCCATTATCTACCGATACAAGTTTAGCGGCTTTCGTTTTACGTGC
TCGCAAATGGAGAAACGACTTACTACACGATGATCCAAAAAGTATCACTT
TGAACGATTTCAATAAACGGTGGGCTGAAGGCGTTAATATTATTCATGGT
CTGTGGTTTGTCACTTACGATACAAATAGACTGAAAACAATGACTTTGGA
TGTACGCAACAGAACTGtatttaaatctttaaaattcttCTCCAAAAAGA
TTATCGGGAAGCAAGCCGCTCATGACACTCAACTTGCCTCCCATGAGATC
CAACTTGCTGCCCACGGCACTCGACTTACCGACCATGACCATCAACTTAC
CACCCAAGACAACAAACTTACCGCCGATGATGCCCATCTTACCGCTCATG
ACGACCAACTTACCGTCCATGATAACCAACTTACCGCTCATGACAACCAA
CTTACCGCCCATGACGACCAACTTACCGCCCAAGACAACAAACTTACCGC
CCATGACAACCAACTTACCGCCCAAGACAACAAACTTACCGCCGATGATG
CCCATCTTACCGCTCATGACAACCAACTTACCGTCCATGACAACCAACTT
ACCGCTCATGACAACCAACTTACCGCTCATGACAACCAACTTACCACCCA
AGACAACAAACTTACCGCCCATGACAACCAACTTACCGCTCATGACAACC
AAATTACCGCCTACGATAGCAAGCTTACCGCCCATGCCAACCAACTTACC
GCCCATGACGACCATTTTATCACCTACGATAACCGACTTACCGCCCATGA
AAACCAACTTACCGCCCACGACGACCATTTTACCGCTTACGATAACCGAC
TTACCGCCCATGACAACCAATTCACGGCTAACGACAACCAACTTACCGCC
CACGACAGTCAACTCAATGTGTTAACCGAGAGACTTTCAGAAGATGAGTC
GAAGTTCGTTGAAATGGTGGACCGTCTGGAGAAGGAATTCAATTTCATCA
AAGATAATTTTAACGGAAATCATATCAACGTGACAGGAGGATATTGTCTT
GATGgtgccattgaaatcatttcaGCGGAAATCGGACTGCAAAAGAAGCA
ACTACTTTTCAGACTTGGCATGGAACAATGTGCAGAGGAAACccctcttt
ttgaaattctaaaagaTATACCTTGGCGTCACATCAGTTTTCATTTGGAA
AGATTGGGTCGAACTGACATCGTCGAAAATGTTCTCAAGAAAACTCTTAT
TACTGAAGATATTAAATTGGCATCACTGAAGCTCCGTTGTCAATACGCCG
AGGAGGTGATCAGTTCTCTTGCAAACCAATCACTAGTTGGTAGTAGCCAT
GACGCAACAAAGTGTCATAATAGCAATGATCTTTACACTGAACTGGCTGT
CCTTAAAGCCGACCAAATTGATGAAGAACTTGACACTAACTCGGACCGTC
ACGCCCTGATTGAGCACCGTCATTTAGATAAAGATAGCATCGAACTTGAA
AATCTCGTTCAACAGAACGACGAAATTGTTTTCGTGCGCGGGGTTGGGGG
TATGGGTAAAACGACCATGCTAGAAATGTTTGCATTGAGATGGGCTAAAC
GGgagctgaatttaaaaattccgctagattttgtgtttttattttcgtGT
CGAGAAATCAATCGATTGCATGAAAATATCGTGTCAATCGAAgacctttt
taagaaaaaatacccggaaatttttgaaatcgtatctttgaaagaccttT
CACTGATTGCTGATCGTATCTTAATCATCGTCGATGGGCTCGATGAACTT
CAGGGTGTATATGAATCGGAGGAAGTCGCTTATAATGCTTCGATGACACC
TTTCCAAACCATTTTCAACTTGATTAACGTTCACGGCTCTACATTGAAAG
GTCACAAGAGTATCGCTTGTGGTCGACCGAAAGCTTGCGATTTTATCAAG
AGAAGCGTCTTACAGGCCGAAAGGAAAACAGCAAACATCAAAACAGTGGA
AGTTTGCGGATTCAATGAAACACGAGTCGACGAATACATCGAAAAATTCT
TTCGTGGCAACCAGGAGAAGGCGAATAGAGTAAGAGACGCAATCCGAACC
TCGGACAACTTGAAAATCATGTCTAATGTCCCGATCTTTATTTGGGTCAT
CTCTAACGTATACAGTGAGAATTTGATCAAAAAACCGCTGAATACGTTCA
CGGAATTATACATGTACGGGTGTCTCGTCTTCTTGCGTAATCACATGTAT
GACTTTGAGACGGGAAACCGTAATAAAACCTTGATCGAGCTTCTTGAAAA
TGACTTTATATTTGAGTGCGTTTATTCTTTGATGACACTATCTGTTAAGA
CTTACATGAACAATCAAGTCGTTTTCACCGAAAAAGATATTGAGAGCTTG
AACTGTCCCATCCACCTTGAACAGACCGGCCTGATTGTCAAATATAGTCG
TGGGAATCTAGATGAGCCGGTGTACCAGTTTAAGCACCTCGTTCTTCAGG
AATTCCTAACAAGCCTTTACCTGTGTGTTACCAAAGGGATCGGACCGTAC
CTCACTAATCGTGAACTTTCGAGCTGCTCACCCGTTATTTTCGGTATTCT
TCGATTACTCAGAGAAAACGAAAATGCattgtttattaaattttttaatc
gcTTAGCCGAAGTCCATACAGCAAAATCAAGCTTACTGAAAAGACTGCTA
CTACAGCCTTTTAAATCTTGGACTTTTCGCAGATATACATCTCggaatgc
aatcgaaattcccaAATGCATGATTGGACCACACGCACTGGTCATTGATG
CAACTTTCCCAGAATGCCAAGAATTCATGACCAATTTTTATGAGGCGAAA
ATTAAAATCGAATGCCCTTTCTCGAGTGTCTTAATCCGAAGTCGCCTTTC
TGGTATAGATTTGAGAAATGCTCGCTTTGTTGTGGACCAGTTGTGTCTTA
CGCTTGTTATACCACCTTGTATGATGGGCGCTGACCGCCTTATAATTAAC
ACTACGTTTGCACAATGTGCTGGGTTTCTACATATGGTGCGCTATTTCAA
GTTGAAATGCACCTTCAATACGGTTGAAATAGGGTGCCAGTTAAACGTCA
ACGAgaaggaaaatgttttatttttaatgaaacaTAATGGGCTTAAATTG
CAGCTACCCG Run BLAST on NCBI transcript from alignment at sc0000321:140482..146238+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019212 ID=TCONS_00019212|Name=TCONS_00019212|organism=Clytia hemisphaerica|type=transcript|length=5757bp|location=Sequence derived from alignment at sc0000321:140482..146238+ (Clytia hemisphaerica)
TTAGCCACCTTACTGCATGAACCACTAAAAGAATCGCTGCTCAACACCCT
TCATAATCACTACAATCGAACCGACTATGTTGGCCTCCCATCCAACCCAA
CCCTTCTCAACGCTGAGCTACgtaaacaccaaaatagaatcTACCAATTA
CAATCTAAAAGAGTTCTCAACAAGGACCAAGTTGAACTTTTACTACCTAC
CGGAAGTACGCAAACCGATAGTTCAACCTTTGATGTTACTTTAATCATCT
TTTTAATTATCGAGTTCACAAACCTACCTCCGCCCAGCAGAGGTTGGAAA
AAAGATCCATTATCTACCGATACAAGTTTAGCGGCTTTCGTTTTACGTGC
TCGCAAATGGAGAAACGACTTACTACACGATGATCCAAAAAGTATCACTT
TGAACGATTTCAATAAACGGTGGGCTGAAGGCGTTAATATTATTCATGGT
CTGTGGTTTGTCACTTACGATACAAATAGACTGAAAACAATGACTTTGGA
TGTACGCAACAGAACTGtatttaaatctttaaaattcttCTCCAAAAAGA
TTATCGGGAAGCAAGCCGCTCATGACACTCAACTTGCCTCCCATGAGATC
CAACTTGCTGCCCACGGCACTCGACTTACCGACCATGACCATCAACTTAC
CACCCAAGACAACAAACTTACCGCCGATGATGCCCATCTTACCGCTCATG
ACGACCAACTTACCGTCCATGATAACCAACTTACCGCTCATGACAACCAA
CTTACCGCCCATGACGACCAACTTACCGCCCAAGACAACAAACTTACCGC
CCATGACAACCAACTTACCGCCCAAGACAACAAACTTACCGCCGATGATG
CCCATCTTACCGCTCATGACAACCAACTTACCGTCCATGACAACCAACTT
ACCGCTCATGACAACCAACTTACCGCTCATGACAACCAACTTACCACCCA
AGACAACAAACTTACCGCCCATGACAACCAACTTACCGCTCATGACAACC
AAATTACCGCCTACGATAGCAAGCTTACCGCCCATGCCAACCAACTTACC
GCCCATGACGACCATTTTATCACCTACGATAACCGACTTACCGCCCATGA
AAACCAACTTACCGCCCACGACGACCATTTTACCGCTTACGATAACCGAC
TTACCGCCCATGACAACCAATTCACGGCTAACGACAACCAACTTACCGCC
CACGACAGTCAACTCAATGTGTTAACCGAGAGACTTTCAGAAGATGAGTC
GAAGTTCGTTGAAATGGTGGACCGTCTGGAGAAGGAATTCAATTTCATCA
AAGATAATTTTAACGGAAATCATATCAACGGTATGTTGAAGCTCCTTAAA
TTTATCAAACTATTCTCACAAAATtttaatatgaaagaatatgTGTGGTA
CGGGTTGTACTAGTTGTGTAAAGTCATTTGCTTTTCAAtcaatgaaattt
caaattctttgtCTAAATTCACTAAAAGATTTGTTTACTGAAAACGcaag
taattattttttattaattcGAATCGTGCGTTTTGGAACCTTTTTCTTTG
TTAGACTCACTCGTCAACTTCAACCTATAATTATTCGATTTTTTACACGT
TCAGTGACAGGAGGATATTGTCTTGATGgtgccattgaaatcatttcaGC
GGAAATCGGACTGCAAAAGAAGCAACTACTTTTCAGACTTGGCATGGAAC
AATGTGCAGAGGAAACccctctttttgaaattctaaaagaTATACCTTGG
CGTCACATCAGTTTTCATTTGGAAAGATTGGGTCGAACTGACATCGTCGA
AAATGTTCTCAAGAAAACTCTTATTACTGAAGGTAAGCGTATTACAGAAC
CCGTCAATTTACCCGTCAATTTACCCGTTCTCTTTAATTTTCTCTTACCA
AGGATACTTTAAAAGCTAAAGTATCCTTACTCAGAATGAAATATGTCCGT
GATATTGTTATTTTCAGCTTAACcatattcatactaggctttagGTGGGT
TCCAATTCTCAGAAAGAGGTGTTTTCCAAAACTCTtctgtaacttttgat
ctagagtgGCTATGGACTTGAAAATTGGCTCAgctgttcttattattttt
ttttgcactttgagcctcaaattgttcttatcctgttcctATTTATAGGG
AAAAATTGTAgtattttaggctttatacCCATTTTTTTCTACTTTGACTA
GCGATTTGGAGcctgattgttcttataaaattgttcttataaaaaaagag
tgcaccaaaaaattgacttttaaaatgttgaaaatgagtaacttttttta
aataatgatgGTTTTtgtggtgacgtcatcacagtgtcaagatttttttt
agactagagtctacttttgactgaactttgctttttgatgattgtGATGG
CGCTGAGTcaagtgaagtagactagaggatttcgtcattttgaatttttt
cactttcgttttcaaaaattataagaaaacaacaTAACAGTAAAATATAT
GCTAAAATCCATCGTCATCGAAGTCTtatgaaactataaaaaaaacatga
aaatacctccaaaattttgaagaaattggtCTATTGAACATGGCTTTCTG
TTTGGAGTCTGCCAAATTACGCCGCTATAAGTAGCCCCCGGGCTAGATTT
TTTAAAgagagctattagcaaaagaacGCCAGGGGTAGAAAACACCCctt
gataaaaatagggttgaAGTTCAGTTATTTCTAAAATCTCATAGGCTCAG
TTTCATTTCAGGTTTTGAGTGATGTGTTCCTAcgaatattttttcattaa
aaacgcTCTCTGTGTTATCATCTTATCCTTTTTACAAAGATCTATGACGT
AGGCCTCTTGAAAATTTGGTAAATGTGGATGAAATTTGACCCTTATACTC
GATCGAGGAAGCTGGTTTTCCTCTCACTTTTACAAAGATTTATGACGTAG
GCCtcttgaaaatttgataaatgtgGATGAAATTTGACCCTTACACTCcg
aaaatttagagttttatttttttgtctgGACAAGTACGCGAGGGAAAATT
TCTTTGAGGCCTAGTACTCACTTGTTAAATAGTTACGCCTACGTGCGTTT
AAGTGCACTTGAGGGTTTatatacagttgatgctctcttattcgatgttG
TAATATTCAATATGCGTCAAACAAGAAACTCATAAACGATGCTCTTCTAT
TCGACACGCTCCCTTATATTCAATAAAATCCGATTTTCCTTGGAAATCGA
ACTGTATGAGTTAATATTTTACACCCATTTTAgaaatacagtcaactctc
gctaattcgaatatttttgcattacaaattgtttttttataagaaactag
ttttatcAAGCAGCCTCattgtttcttaagaaatcagccttTCGAGCCTT
AAATGTtgcttacatgtttctaaactttttgacataatcagcctcgtGGA
AGGCTgaattggaaggttcttaaaagaaaccgaattaaaaaatgttattt
tctcattctcagcctcagcatgtttcctTGGATGTTTCTTAgattttagg
cattctgagcctcgtgtttcttaaaagtgtgtttcttaaaattaaaaaaa
cgtgtagtccaCTCAAATTTTTGGTTCCCAAAAAATGACCGTTTTtcgaa
agagaattttttcgAATATTCTTCATAGCTTTTGAACACGTGAAGCAAAC
TTAAaatatgatagctcaaaatttaagttagccttTCCAATTTCTGATGG
TGAAAAGTTTAGATttgtaacatttttagttttctcacaGCCTCACTTCa
aacttgtacactttttttaaacacCTTGAATGAATAAATTTCTTCGCTCT
TTTAGATATTAAATTGGCATCACTGAAGCTCCGTTGTCAATACGCCGAGG
AGGTGATCAGTTCTCTTGCAAACCAATCACTAGTTGGTAGTAGCCATGAC
GCAACAAAGTGTCATAATAGCAATGATCTTTACACTGAACTGGCTGTCCT
TAAAGCCGACCAAATTGATGAAGAACTTGACACTAACTCGGACCGTCACG
CCCTGATTGAGCACCGTCATTTAGATAAAGATAGCATCGAACTTGAAAAT
CTCGTTCAACAGAACGACGAAATTGTTTTCGTGCGCGGGGTTGGGGGTAT
GGGTAAAACGACCATGCTAGAAATGTTTGCATTGAGATGGGCTAAACGGg
agctgaatttaaaaattccgctagattttgtgtttttattttcgtGTCGA
GAAATCAATCGATTGCATGAAAATATCGTGTCAATCGAAgacctttttaa
gaaaaaatacccggaaatttttgaaatcgtatctttgaaagaccttTCAC
TGATTGCTGATCGTATCTTAATCATCGTCGATGGGCTCGATGAACTTCAG
GGTGTATATGAATCGGAGGAAGTCGCTTATAATGCTTCGATGACACCTTT
CCAAACCATTTTCAACTTGATTAACGTTCACGGCTCTACATTGAAAGGTC
ACAAGAGTATCGCTTGTGGTCGACCGAAAGCTTGCGATTTTATCAAGAGA
AGCGTCTTACAGGCCGAAAGGAAAACAGCAAACATCAAAACAGTGGAAGT
TTGCGGATTCAATGAAACACGAGTCGACGAATACATCGAAAAATTCTTTC
GTGGCAACCAGGAGAAGGCGAATAGAGTAAGAGACGCAATCCGAACCTCG
GACAACTTGAAAATCATGTCTAATGTCCCGATCTTTATTTGGGTCATCTC
TAACGTATACAGTGAGAATTTGATCAAAAAACCGCTGAATACGTTCACGG
AATTATACATGTACGGGTGTCTCGTCTTCTTGCGTAATCACATGTATGAC
TTTGAGACGGGAAACCGTAATAAAACCTTGATCGAGCTTCTTGAAAATGA
CTTTATATTTGAGTGCGTTTATTCTTTGATGACACTATCTGTTAAGACTT
ACATGAACAATCAAGTCGTTTTCACCGAAAAAGATATTGAGAGCTTGAAC
TGTCCCATCCACCTTGAACAGACCGGCCTGATTGTCAAATATAGTCGTGG
GAATCTAGATGAGCCGGTGTACCAGTTTAAGCACCTCGTTCTTCAGGAAT
TCCTAACAAGCCTTTACCTGTGTGTTACCAAAGGGATCGGACCGTACCTC
ACTAATCGTGAACTTTCGAGCTGCTCACCCGTTATTTTCGGTATTCTTCG
ATTACTCAGAGAAAACGAAAATGCattgtttattaaattttttaatcgcT
TAGCCGAAGTCCATACAGCAAAATCAAGCTTACTGAAAAGACTGCTACTA
CAGCCTTTTAAATCTTGGACTTTTCGCAGATATACATCTCggaatgcaat
cgaaattcccaAATGCATGATTGGACCACACGCACTGGTCATTGATGCAA
CTTTCCCAGAATGCCAAGAATTCATGACCAATTTTTATGAGGCGAAAATT
AAAATCGAATGCCCTTTCTCGAGTGTCTTAATCCGAAGTCGCCTTTCTGG
TATAGATTTGAGAAATGCTCGCTTTGTTGTGGACCAGTTGTGTCTTACGC
TTGTTATACCACCTTGTATGATGGGCGCTGACCGCCTTATAATTAACACT
ACGTTTGCACAATGTGCTGGGTTTCTACATATGGTGCGCTATTTCAAGTT
GAAATGCACCTTCAATACGGTTGAAATAGGGTGCCAGTTAAACGTCAACG
AgaaggaaaatgttttatttttaatgaaacaTAATGGGCTTAAATTGCAG
CTACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019212-exon-sc0000321-1491911889:140482..141811 | TCONS_00019212-exon-sc0000321-1491911889:140482..141811 | Clytia hemisphaerica | exon |
| TCONS_00019212-exon-sc0000321-1510915933:140482..141811 | TCONS_00019212-exon-sc0000321-1510915933:140482..141811 | Clytia hemisphaerica | exon |
| TCONS_00019212-exon-sc0000321-1575043694:140482..141811 | TCONS_00019212-exon-sc0000321-1575043694:140482..141811 | Clytia hemisphaerica | exon |
| TCONS_00019212-exon-sc0000321-1491911889:142086..142313 | TCONS_00019212-exon-sc0000321-1491911889:142086..142313 | Clytia hemisphaerica | exon |
| TCONS_00019212-exon-sc0000321-1510915933:142086..142313 | TCONS_00019212-exon-sc0000321-1510915933:142086..142313 | Clytia hemisphaerica | exon |
| TCONS_00019212-exon-sc0000321-1575043694:142086..142313 | TCONS_00019212-exon-sc0000321-1575043694:142086..142313 | Clytia hemisphaerica | exon |
| TCONS_00019212-exon-sc0000321-1491911889:144337..146238 | TCONS_00019212-exon-sc0000321-1491911889:144337..146238 | Clytia hemisphaerica | exon |
| TCONS_00019212-exon-sc0000321-1510915933:144337..146238 | TCONS_00019212-exon-sc0000321-1510915933:144337..146238 | Clytia hemisphaerica | exon |
| TCONS_00019212-exon-sc0000321-1575043694:144337..146238 | TCONS_00019212-exon-sc0000321-1575043694:144337..146238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000321 | supercontig | sc0000321:140482..146238 + |
Blast
BLAST of TCONS_00019212 vs. Swiss-Prot (Human)
Match: NAL12 (NACHT, LRR and PYD domains-containing protein 12 OS=Homo sapiens GN=NLRP12 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 2.464e-19 Identity = 100/415 (24.10%), Postives = 183/415 (44.10%), Query Frame = 1
Query: 1660 KCHNSNDLYTELAVLKAD----QIDEEL-DTNSDRHALIEHRHLDKDSIELENL------VQQNDEIVFVRGVGGMGKTTMLEMFALRWAKRELNLKIPLDFVFLFSCREINRLHENIVSIEDLFKKKYPEIFEIVSLKDLSLIADRILIIVDGLDELQGVYESEEVAYNASM---TPFQTIFNLINVHGSTLKGHKSIACGRPKACDFIKRSVLQAERKTANIKTVEVCGFNETRVDEYIEKFFRGNQEKANRVRDAIRTSDNLKIMSNVPIFIWVISNVYSE-----NLIKKPLNTFTELYMYGCLVFLRNHMYDFETGNRNKTLIELLENDFIFECVYSLMTLSVKTYMNNQVVFTEKDIESLNCPIHLEQTGLIVKYSRGNLD-EPVYQFKHLVLQEFLTSLYLCVTKGIG 2844
+C N + YT L ++K Q+ ++L DT + H+ I++E L + V ++G G+GK+ + L WA +L + D++F +CRE+N+ S++DL +PE L++L + +R+L I+DG DEL+ + + + P + + N + + L + RP A + + R +L+ R VE+ GF+E EY K+F N E+A +V + +R ++ L M VP+ WV+ + L+++ T T +YM ++L + M R ++ N L +L+ N +++F E+D+ L + + +++ E Y F HL QEF ++Y + +G G
Sbjct: 149 ECVNLSHRYTRLLLVKEHSNPMQVQQQLLDTGRGHARTVGHQ---ASPIKIETLFEPDEERPEPPRTVVMQGAAGIGKSMLAHKVMLDWADGKL-FQGRFDYLFYINCREMNQ-SATECSMQDLIFSCWPE--PSAPLQELIRVPERLLFIIDGFDELKPSFHDPQGPWCLCWEEKRPTELLLNSL-IRKKLLPELSLLITTRPTALEKLHR-LLEHPRH------VEILGFSEAERKEYFYKYFH-NAEQAGQVFNYVRDNEPLFTMCFVPLVCWVVCTCLQQQLEGGGLLRQTSRTTTAVYM----LYLLSLMQPKPGAPR----LQPPPNQ------RGLCSLAADGLWNQKILFEEQDLRKHGLDGEDVSAFLNMNIFQKDINCERYYSFIHLSFQEFFAAMYYILDEGEG 533
The following BLAST results are available for this feature:
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