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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018862 ID=TCONS_00018862|Name=TCONS_00018862|organism=Clytia hemisphaerica|type=transcript|length=1153bp
ttcttgccagagcttcaattttcaaaaaacggtaaaataaccaaaaattg
ccaatatgttaAATGACACTGATTGTAGACGAGCGAGAGCCAAAGTGTTC
ATCATCATTTTACTCAGATCTGAGCCCCACTTAATCACATttacattttg
caaaataattttgactttaaagtCAAATTATAACAATTCTGTTTTAATCT
TTATTCGTTTGTAAACTTGCGTCTCAACAGAAGCAAGAAGCTGACGATAG
CAAAGCAAATGCACGAAAGTATCGTGAACCCATAAAAACTTTCCTGGTAC
ATTAGAAAAGCGGTGAAATATCCGCAACACATAAACGACTTGGCAACAAC
GTATCGTTGTGATTCTATAAAGCTCTTTGAATCTGCTGGTACCAATGAAA
AAATCAACCATTTTGAATAAACACCTGATCCAAACCCAAACAAAATATTC
AATCCAATACAAGAAGTAAATAAAGTGAATTTAATTGCGTCCACATTGAG
AGGTATATTAATTGAGATAGTTGCAAGAGAAAGTTCCATCATTGCAAATA
AAAAACATACGATAAACAACAGATAAAAAGTTAAACGACTTTTTAAAACT
CGTTGTTGAAAGATGAAATTTGCAGCGCTGAAGATGATTGCTGCAATACC
AGTTAAAACACTGATTCGATTGATGTTCCATCCGAAATTATACAAACCGA
TCATGTTGTTCATCACTTCCATCATAGAATCAATGTAACTGATGAATCCA
TCCGTGAAAATCAACACAAGGAGATTGGCGTTGGTGAGAGTATCCATTAA
CGTCCAATCAGACTTCTTGCCGGACGGAGAAACATCATCCTCATTACTGT
CATTCTTATACTTAGCTACAAAAATATGATAACCATCTTCTTTGGTCAGA
TCAGTAACATTAATGTAAACGAGCAACGTGTAAATCAGGACTAAAATGAT
TAAAACCAGACTGATGCAGTTATATTGGTTGATTTCTATTGGTCCAATGT
AGAAATGAACACCATTGAAAAGGACGGGTGTACAGGGTGCAAGGGCGTAT
ATGACAGAAGCTGATATTTGATAGATGGATAGCACTTTAGCAAATTCTTC
CTTTGTGTAAACTCGTGCGAATTCAcctgaaaaatgacaaaacaaaAGTA
TTG Run BLAST on NCBI protein sequence of TCONS_00018862-protein >TCONS_00018862-protein ID=TCONS_00018862-protein|Name=TCONS_00018862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
ILLFCHFSGEFARVYTKEEFAKVLSIYQISASVIYALAPCTPVLFNGVHF
YIGPIEINQYNCISLVLIILVLIYTLLVYINVTDLTKEDGYHIFVAKYKN
DSNEDDVSPSGKKSDWTLMDTLTNANLLVLIFTDGFISYIDSMMEVMNNM
IGLYNFGWNINRISVLTGIAAIIFSAANFIFQQRVLKSRLTFYLLFIVCF
LFAMMELSLATISINIPLNVDAIKFTLFTSCIGLNILFGFGSGVYSKWLI
FSLVPADSKSFIESQRYVVAKSFMCCGYFTAFLMYQESFYGFTILSCICF
AIVSFLLLLRRKFTNE Run BLAST on NCBI transcript from alignment at sc0000309:30538..31690 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018862 ID=TCONS_00018862|Name=TCONS_00018862|organism=Clytia hemisphaerica|type=transcript|length=1153bp|location=Sequence derived from alignment at sc0000309:30538..31690 (Clytia hemisphaerica)
CAATACTtttgttttgtcatttttcaggTGAATTCGCACGAGTTTACACA
AAGGAAGAATTTGCTAAAGTGCTATCCATCTATCAAATATCAGCTTCTGT
CATATACGCCCTTGCACCCTGTACACCCGTCCTTTTCAATGGTGTTCATT
TCTACATTGGACCAATAGAAATCAACCAATATAACTGCATCAGTCTGGTT
TTAATCATTTTAGTCCTGATTTACACGTTGCTCGTTTACATTAATGTTAC
TGATCTGACCAAAGAAGATGGTTATCATATTTTTGTAGCTAAGTATAAGA
ATGACAGTAATGAGGATGATGTTTCTCCGTCCGGCAAGAAGTCTGATTGG
ACGTTAATGGATACTCTCACCAACGCCAATCTCCTTGTGTTGATTTTCAC
GGATGGATTCATCAGTTACATTGATTCTATGATGGAAGTGATGAACAACA
TGATCGGTTTGTATAATTTCGGATGGAACATCAATCGAATCAGTGTTTTA
ACTGGTATTGCAGCAATCATCTTCAGCGCTGCAAATTTCATCTTTCAACA
ACGAGTTTTAAAAAGTCGTTTAACTTTTTATCTGTTGTTTATCGTATGTT
TTTTATTTGCAATGATGGAACTTTCTCTTGCAACTATCTCAATTAATATA
CCTCTCAATGTGGACGCAATTAAATTCACTTTATTTACTTCTTGTATTGG
ATTGAATATTTTGTTTGGGTTTGGATCAGGTGTTTATTCAAAATGGTTGA
TTTTTTCATTGGTACCAGCAGATTCAAAGAGCTTTATAGAATCACAACGA
TACGTTGTTGCCAAGTCGTTTATGTGTTGCGGATATTTCACCGCTTTTCT
AATGTACCAGGAAAGTTTTTATGGGTTCACGATACTTTCGTGCATTTGCT
TTGCTATCGTCAGCTTCTTGCTTCTGTTGAGACGCAAGTTTACAAACGAA
TAAAGATTAAAACAGAATTGTTATAATTTGactttaaagtcaaaattatt
ttgcaaaatgtaaATGTGATTAAGTGGGGCTCAGATCTGAGTAAAATGAT
GATGAACACTTTGGCTCTCGCTCGTCTACAATCAGTGTCATTtaacatat
tggcaatttttggttattttaccgttttttgaaaattgaagctctggcaa
gaa Coding sequence (CDS) from alignment at sc0000309:30538..31690 >TCONS_00018862 ID=TCONS_00018862|Name=TCONS_00018862|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at sc0000309:30538..31690 (Clytia hemisphaerica)
ATACTtttgttttgtcatttttcaggTGAATTCGCACGAGTTTACACAAA
GGAAGAATTTGCTAAAGTGCTATCCATCTATCAAATATCAGCTTCTGTCA
TATACGCCCTTGCACCCTGTACACCCGTCCTTTTCAATGGTGTTCATTTC
TACATTGGACCAATAGAAATCAACCAATATAACTGCATCAGTCTGGTTTT
AATCATTTTAGTCCTGATTTACACGTTGCTCGTTTACATTAATGTTACTG
ATCTGACCAAAGAAGATGGTTATCATATTTTTGTAGCTAAGTATAAGAAT
GACAGTAATGAGGATGATGTTTCTCCGTCCGGCAAGAAGTCTGATTGGAC
GTTAATGGATACTCTCACCAACGCCAATCTCCTTGTGTTGATTTTCACGG
ATGGATTCATCAGTTACATTGATTCTATGATGGAAGTGATGAACAACATG
ATCGGTTTGTATAATTTCGGATGGAACATCAATCGAATCAGTGTTTTAAC
TGGTATTGCAGCAATCATCTTCAGCGCTGCAAATTTCATCTTTCAACAAC
GAGTTTTAAAAAGTCGTTTAACTTTTTATCTGTTGTTTATCGTATGTTTT
TTATTTGCAATGATGGAACTTTCTCTTGCAACTATCTCAATTAATATACC
TCTCAATGTGGACGCAATTAAATTCACTTTATTTACTTCTTGTATTGGAT
TGAATATTTTGTTTGGGTTTGGATCAGGTGTTTATTCAAAATGGTTGATT
TTTTCATTGGTACCAGCAGATTCAAAGAGCTTTATAGAATCACAACGATA
CGTTGTTGCCAAGTCGTTTATGTGTTGCGGATATTTCACCGCTTTTCTAA
TGTACCAGGAAAGTTTTTATGGGTTCACGATACTTTCGTGCATTTGCTTT
GCTATCGTCAGCTTCTTGCTTCTGTTGAGACGCAAGTTTACAAACGAATA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018862-exon-sc0000309-1491911889:30538..31690 | TCONS_00018862-exon-sc0000309-1491911889:30538..31690 | Clytia hemisphaerica | exon |
| TCONS_00018862-exon-sc0000309-1510915933:30538..31690 | TCONS_00018862-exon-sc0000309-1510915933:30538..31690 | Clytia hemisphaerica | exon |
| TCONS_00018862-exon-sc0000309-1575043694:30538..31690 | TCONS_00018862-exon-sc0000309-1575043694:30538..31690 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:30538..31690 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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