TCONS_00018629 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018629
Unique Name	TCONS_00018629
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	701

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000303:143177..147217-

transcript sequence

>TCONS_00018629 ID=TCONS_00018629|Name=TCONS_00018629|organism=Clytia hemisphaerica|type=transcript|length=701bp
ATGACTTCCAAAGAGGTGCATACATCAATTTTGACTTCGCTGTTGGCTGG
GAGTTGCGGTGGGATATCAACAGACATTGTTTTATTTCCACTTGACTCGA
TCAAAACAAGAGCACAAACACAAGCTGGTTTTTGGAAGAGTGGTGGATTC
AAGGGCCTTTTTCGTGGTGTTGGCTCAGTTGCTCTGGGCTCTGCTCCGTC
AGGCGCATCCTTTTTCTTTGCATATGAGGGCGTAAAGAATTTAACAAAAT
CGAACATGTCACCTCTGGCTTCTCATTTACTTGCTGCATCTTGTGGTGAA
GTTTTGTGTTGTATGCTTTGGACACCTTTTGAAGTCGTAAAACAAACAGC
ACAAACCACTGAAGGAATGAATAGCCTCAGTGCTTTTCGGCATATCAAAA
AGAAATATGGATTAGCTGGCTTAACTCGAGGTTTCTTCAGCATGGTATCG
CGAGAGattCCATTTACTGTCATTCAATTTCCTCTTTGGGAGCACTTGAA
AACTTTAGCAGCAAAGGATGACAAACCATGCACCCCGTTGGCATCTGCTG
TGGCAGGTTCATTTGCTGGTGGTTTTGCTGCGGCGCTCACTACACCCATG
GATGTGGCCAAAACAAGAATCATACTGGTTCAGAATGAAGGAAGTCATGG
TGGAAACCCTTATAAAGTGATGTACAGTATTGGCAAAACTGAAGGGATAG
C

Run BLAST on NCBI

transcript from alignment at sc0000303:143177..147217-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018629 ID=TCONS_00018629|Name=TCONS_00018629|organism=Clytia hemisphaerica|type=transcript|length=4041bp|location=Sequence derived from alignment at sc0000303:143177..147217- (Clytia hemisphaerica)
ATGACTTCCAAAGAGGTGCATACATCAATTTTGACTTCGCTGTTGGTAAG
AAAAAGCTAATTATGAAAGCCCTCACTGTCACAATCAACTGCTCTTATTT
CAGAACATGAACTTACGTTTGCGTCTACTGAACACTTGTCCCTTCATTGA
ACCTTCAATCAATCAGCAATCAAGTTGTCGTAGAACGTTACTTTCATATT
TTTCATAGACCATATACTGTAATTGCAGTATTTACAAGAAATCAAATTCA
AGATTCAATCAGAAAATACGCATATTTTGTACATAATTTATCATAATTTT
TAAATACGCAGATAAATTTTATTTTCCTATCTATCAAAAGCGTGTTCAAT
TTTAGTACTACAAAACTTGTCTATTTTTAAGGCTGGGAGTTGCGGTGGGA
TATCAACAGACATTGTTTTATTTCCACTTGACTCGATCAAAACAAGAGCA
CAAACACAAGCTGGTTTTTGGAAGAGTGGTGGATTCAAGGGCCTTTTTCG
TGGTGTTGGCTCAGTTGCTCTGGGCTCTGCTCCGTCAGGTAGTTTTTCTT
CAATAAATAGAAAATTAAGAAGCTTTGATAAAAGCTAAATGCTATCTCTT
CGGACTTACTTTGGAGGTAGCTCATTAGTTAATTCTGATTTTTTGCACAA
TGATGAAAAATGACATTACAGAAAATATGACTGCCCCTGATTTTCGAGAA
AAAATGTTTTTGGATAAATTTGGGCCAAAAAGTGCCTAAAAATAGGATTT
TTTGGACTTTAGTGAACTTTTTGTAAAATTGCTTCATTATTTTTTCTGCA
GAGACAGTGGGCAAGGTTCTCTAAAAAGTGGCTGAACCTCTTTTGGCCAG
GCTGTAAAAACCAGATTTTTGTATTTGGGGAATTTCCCTTCTGTTATTTT
TAGGGAAAGTTACGTTTTTCAGGATTGGATTGGTATTTTTATCTGATCTT
TTTAGTTTGCATCTTCTTATTATTGTTTCCATTTTTCTATTTTATTACAT
TAGCCTTCAGATAGGTCCCTTCAGCACGGAAGCTTGTTAAGACTAACTTA
AAAGTATAAATTTTGTTATGTCATTATGTATTGAAAATATGCATATAATT
GAGTTTAAGTTTCCTACATTATCAACTTTTCTGTTATAGGCGCATCCTTT
TTCTTTGCATATGAGGGCGTAAAGAATTTAACAAAATCGAACATGTCACC
TCTGGCTTCTCATTTACTTGCTGCATCTTGTGGTGAAGTTGTAAGTATCA
AATGATCCCAAGCTTAAAAATTGTTTAGAAATAATTAGTTATTCTTACTT
TAAATCGCGCTATTCCATAAAATTTCCATACAGGGGGGTGGACGAACCTT
TTCAAATGAAAACAAATTTCTTGGAAAAGTGTAGATACCCCCCCCCCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCCCCTGG
AAAATTGCAAAAGAACCCTTGGAAAAATTTTTTTTCATGTCTTAAAGTGA
GGGTGAACGAACTAAAATCAGCTGTTCACCCCCTGGAAATTCAAGAATAA
CTTATTACCTCCTGGAAAAATGAAAAAACACTTCTTTAGACCCCCTGGAA
ATTCTTCTCGGATTATCCCCTGGAAATGTGCGTCTACCCCCCCCCTGTAT
GGTCATAAAATGAAATGGCCCATTGAATTAGAGATTTTTTAGAGATTTAT
TTGTCATCAGATAGATTAAATTCCAAGGCACACCCAGAAGTACTATTGGA
AAAACATATCTAACCATTTCTACTAACAATCTAAAAGTATTCAGATTGTA
TCTCCTAGTTGTGTTGTATGCTTTGGACACCTTTTGAAGTCGTAAAACAA
ACAGCACAAACCACTGAAGGAATGAATAGCCTCAGTGCTTTTCGGCATAT
CAAAAAGAAATATGTAGGTTTTTTTTTACCTTTTTTGATATTTAATGATG
ATTTCAATTTTTCATATTCTTTAGTTCTCATGCATGTTTCGTATACCATT
TGAAGTTGTCAAGCAAACTGCTCAAGCAAATAAAAGCTTGAATAGTCTCG
ATGCATTGAAATTCATTGTGAAAAGAGACGTAGGTTGTTTTGAGATTTTT
ATTAACGTTTGTTTTATCCAGATCAAGGAAAGATGAACTTTCATTTAGTT
TAAGCTTGTACCAATTTTTGCTCTGCTTCTTCATTTATCATTTATTGGTT
ATTTTTCTCAAATTTTGTTTTCCATTTTACTGAAGCTATTGGAGTCCAAC
CTTTGCTGCATGCTTTGGATTTCTCGATATTATACCCTCGAAGAATAAAT
TTTCTAAACTTTACTTTTCAGGGATTAGCTGGCTTAACTCGAGGTTTCTT
CAGCATGGTATCGCGAGAGGTATTTGTATATTTTTTCCTTAGATAAAATT
TTATTTGATGCAAACTATAACTAGCTATAACTAAAACAAGAAAAATTTCA
TATTCAACTCCTTTAATATACAATTTTCTTCTTTTTTTAGATTCCATTTA
CTGTCATTCAATTTCCTCTTTGGGAGCACTTGAAAGTGAGTATTATGAGC
ATTTATGATCATTCTGTAGCCCCATTATTTCCTCTTTTGGAACACTTGAA
AGTGAGTATTATGAGCATTTATGATCATTCTGTAGCCCCATTATTTCCTC
TTTTGGAACACTTGAAAGTGAGTATTATGAGCATTCATGATCATTCTGTA
GCCCCATTATTTCCTCTGTTGGAACACTTGAAAGTGAGTATTATGAGCAT
TCATGATCATTCTGCAGCCCCATTATTTCCTCTTTGGGAGCACTTGAAAG
TGAGTATTATGAGAATTTATGATCATTCTGTAGCCCCATTATTTCCTCTT
TGGGAACACTTGAAAGTGAGTATTATGAGCATTTATGATCATTCTGTAGT
CCCATTATTTCCAAACTTTCCTTGTAACCTTAACTTGATTTAGATAATTC
AATTCCTTATAGCAATTAAACTTTATCGCTCTCAAGACAATTGACATTTC
AAGTTCATCCCCTTGACTTTTACTTCTTGCTCCAAATTTCTGTCCAACCT
TCAAAGTGAAATGGAACTTTGATATACATCTTTTATTGTGGTTGCACATT
CTTGTTGGGGAAATAAAAGAGGCACAAAAATTAAGGTATAAAGGAAGCTC
TGCCCTCTGGGTTTTCTTTTTAAAACTTTTGAATGATTTTTTCCATTTTA
TAGACTTTAGCAGCAAAGGATGACAAACCATGCACCCCGTTGGCATCTGC
TGTGGCAGGTTCATTTGCTGGTGGTTTTGCTGCGGCGCTCACTACACCCA
TGGATGTGGCCAAAACAAGAATCATACTGGTTCAGGTGAGGGAAATCAAA
GAAGAAAAATGTTGATTGTTTTTATGAAATGGCCGTCATCAAACCTTTTG
GGGCTATTTTTTGTTTTGTTTTTGTTGTCTTAACGTAAATCTAGCCATTT
TTTGCATAAAACGAAACATTTATTAAACTCTAAAGGGGAAGAATAGCAAG
TTCTTTAATTCCAGAACCCCTTAAATTAAAATTTTTAGAGTACTACATTG
CGAGATAATGAGCTTTGTTAGAAGACTTAAATTTTCTGGTGTTTTTAAGT
TAAATTTCACTACCCAAACAGTATAATCCTTCAGCTTATACCAAGAAAGT
AACAAAATTCTGTTCTTTGCTTCTTTTATTTTTAATGGTGTCTTAGTATG
TACGAGTGTTATGATTCTTCGGTTTTCCAAGCTTCTGAATCCCATTTAGT
TATCAGAAAACTTGAAATTGGACACTAAAAGAACCAAGTAGTTCAAAAAA
ATAAATCCTAATTATGACTCTTCACTTTGAGCCTTTTACTGTATCATAAT
AATGATTTCTTTTTTCCAAATAGAATGAAGGAAGTCATGGTGGAAACCCT
TATAAAGTGATGTACAGTATTGGCAAAACTGAAGGGATAGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010413	XLOC_010413	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000303	supercontig	sc0000303:143177..147217 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.747485	0.740944	0.865399	0.40883	3.54699	2.93878	2.92082	1.4666	2.78976	2.59027	2.24399	1.765	3.15102	1.5687	1.39036	1.59082	6.87729	6.5437	3.40087	3.31029	3.46235	5.2275	3.91301	3.11889	2.6207	2.08911	1.46049	0	1.40198	2.64998

Blast

[Close]

BLAST of TCONS_00018629 vs. Swiss-Prot (Human)
Match: SAMC (S-adenosylmethionine mitochondrial carrier protein OS=Homo sapiens GN=SLC25A26 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.554e-54
Identity = 108/229 (47.16%), Postives = 152/229 (66.38%), Query Frame = 1

Query:   31 LTSLLAGSCGGISTDIVLFPLDSIKTRAQTQAGFWKSGGFKGLFRGVGSVALGSAPSGASFFFAYEGVKNL----TKSNMSPLASHLLAASCGEVLCCMLWTPFEVVKQTAQTTEGMNSLSAFRHIKKKYGLAGLTRGFFSMVSREIPFTVIQFPLWEHLKTL-AAKDDKPCTPLXXXXXXXXXXXXXXXLTTPMDVAKTRIILVQNEGSHG-GNPYKVMYSIGKTEGI 699
            + +L+AG   G+S D++LFPLD+IKTR Q+  GF K+GGF G++ GV S A+GS P+ A+FF  YE VK      + S ++P+  H+LAAS GEV+ C++  P EVVKQ AQ +    +   F +I  + G+ GL RG+ S V REIPF+++QFPLWE LK L + + D       SAV G+FAGGFAAA+TTP+DVAKTRI L +   S   GN   V++ + +++G+
Sbjct:    7 VAALVAGGVAGVSVDLILFPLDTIKTRLQSPQGFNKAGGFHGIYAGVPSAAIGSFPNAAAFFITYEYVKWFLHADSSSYLTPM-KHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFSNILYEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRITLAKAGSSTADGNVLSVLHGVWRSQGL 234

The following BLAST results are available for this feature:

BLAST of TCONS_00018629 vs. Swiss-Prot (Human)

BLAST of TCONS_00018629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SAMC	8.554e-54	47.16	S-adenosylmethionine mitochondrial carrier protein...	[more]

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TCONS_00018629 (transcript) - C. hemisphaerica