TCONS_00018578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018578
Unique NameTCONS_00018578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2730

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018578 ID=TCONS_00018578|Name=TCONS_00018578|organism=Clytia hemisphaerica|type=transcript|length=2730bp
GGGTTGGTGAAGAAGGAAAGTTTTCGCGATACATTACAGTAACGGTCTGG
AATCTTGGTTAAAAGGAAAGACCAAGCGTGATAATTATTTAAGTTGTGAG
GAGAAGATCGATTGATTTGTCAGGGGTTaactttatgaatttttttcttg
cttttaaaaaagaagaaatttaaagaaaaaaaataaagactGCTACAATT
CAGTGACACATATGTAGCATGAAATGGTTAAATGGTGGTAGTAAAGTGGC
GCATAAGGTATTAGGGTCGGACGGTCACCTACGGAATGGGAAGACACCAG
ACGACAATAACAACAAAAGCAACACAAGCCTCAAGAATGGAGTTGGGGCC
AAAGGTCTTCCAAACTCACGACAGAAGCATCGAACGAAGCGAATACAGAG
ACGAAATAATGTCAACATAAAGCATAGTTCTGCCGGTGAATTTGATGCCA
ATCAAGTCAAACGCTTCATATTCTTACAATCCCGTATTTACTGGCTTTCC
TCTTTAATCGGTGATCGACAAAGACCCTACAATTCCACCAAAGGAGTCTT
GGGACTTATGTTATGGATATTCAATTTAACTATTCATTTCGCATTAGACT
TTTATGAAGCGAATACAGTGTTTCATGTGAGTTGGGCTTCATCTATTGGT
GTTTTCCTCGTCATGTTTATAATATCGACCATCTTTTTAATAAGACACAC
TGTTCGTTGGTTCATCAAGACCTTGAAAAAGCTGTCAAAAGACAAAATAT
ACTGCAAAACATTCGTTAAATTGAGTTTCATTTTCAAGCTATCACCATAT
GCAATGTTTATACTCTCCGTCTCGGGGGCTGGGGCGCAGTATGGTTGCTA
TGCTTACGATGATGCATTGACTGTCTCTTTCACAAAAGCAGGGCCAAACG
GAACGAAAGTGGAATTGGTGCCTAATGCTGCTCACATTGTGATCAACGTT
GCACGTTTCACAAGTCTCATGCACATTTATTATATGATGTTCTTGTTGTT
AGGGTTCGCTCTCATCATATTTTTCACAATAGTACACACGCAAAGACTCT
TCAATGCACACATTGGGAACGAACTGAAAGCACACCCTCCGTCGATGACT
TTCCAAGAAGCAGTAGACGATGTAGCAATGCGAACCAAATTGTTAAGAAG
TGCTTCCGAAAATACCACGATTATCTTCTCGACGCTTCTATTGGCAACCA
GCTTATCCTTCGTCGTGAACGCATACAACTTTCTATTCATTAAACGTTAC
GCTATTTATATTTGGTTTGCCATCGCTCCTCTCATATGGACAGTCTCAAT
TCTGATTGGGTCAGCCTTTGTGACGTCATCCTACCAAAAGCTAAAACTAG
TAGTCATGCAGTCATGGGTAGAGATACCAGAGAAGTATGATGAGCTGTGG
AGTAGACGAACTACCTCTAATAGAATCAATACAGCAGCATCTATAAGAAA
ACCCACCTTAGATTGGCGCGCCGGTCTTGAAAACATGCGGCGTCGAAAGG
CCGAACGCGAGGCCACCGAACACGCTGCTATGGAGGAGGAAGTTTTTGAG
AAGGAAGATCTAAAAGAGAACTGTGTCGTTGATATTAACGAAGAGATGGT
TAATGAACAGATCAATGTCGAtaaagaaaacgaaaagaaagaaagtgtGT
TTTCAAAGACCGTTCGAAATATCAACCTTTTAAATAAATTCATCAAAGGT
GCAAGCGACAAGAGTGCCGACGAGATCGAAATGGGAGCTGAAGAAGTTAG
AAAATCACTCTATGACAATGTGGAACAACAAAAAGATACTTTGACTGTTG
AGCAATCAGCGACAGGTGAAGAAAGCTCGTACAAAAGTGGTGAAGAGTTT
CGTGAGACCACGGAAACAGGTGACCAGTTAACTGTCCCTTCTTCTGATGC
TGCTCTTTACAGTGATAATCCCATTGTTAACGAACAAATACGTTTGAAAG
AAGTGCAAGAATTGAGAAAACAGTCTATAGCcagtgaaaacaaagaaaac
gacTCTTCGGCCTGGAAAAAGATTCCGCGTATAAAATTTCGTAAAGCTAC
TAAACCAAACATTGAAATTGATAGGACTAGGGAAGAAATATCCACGTTTG
AAAAGGAGAACAGCAAAAACGACGAGGGGCCGCAAAGGACTAACAGCGTT
AAATTCGATAAAGTGGTGCGCCTTGCACAGCAAGTCAACAAGTTCACAGA
CAACACAAAAAGGCAACAAATAAGACGAAAGTTCAATTATGAAAAGTACA
TCAAATATCTGGAATTGACTTTAGATACTGTGGGATTTTCTTTGGGTAAA
GTGACGATTACTTGGGACCGCGTTTCTTTCTTTATCGTTCTTTTAATGAC
CCTGGTGGGTGTGTTTGCTCAGAACGCATTCCTCAAGTAATCAACAGTGA
AGGCGATCGAAATAACTAAGATATAAATGATTCATTCAAACAATGATCTA
ACGACGGTGCATGTGCTCATGTTACCGAAATGCATTTTCTTATCAAGATT
CCGATATCAACCCTCCTCGCGTTATTGTAGTTTCAATTTCAtagaattat
ttttaaaattttttgtagATAATGGTTCTTTTACTTCTTTTTTACGCATG
TACATTTCAGTgagaattcaaattcaaaaagaaacaaCGACTTACAGAAA
TCTTTGGACAACACTTATCTTCTTTACACGTGCAAGTATGAAAATAATGT
GCAGTTAAAATCTACCCAATCCAGTTGTNN
Run BLAST on NCBI

transcript from alignment at sc0000301:202711..207313-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018578 ID=TCONS_00018578|Name=TCONS_00018578|organism=Clytia hemisphaerica|type=transcript|length=4603bp|location=Sequence derived from alignment at sc0000301:202711..207313- (Clytia hemisphaerica)
GGGTTGGTGAAGAAGGAAAGTTTTCGCGATACATTACAGTAACGGTCTGG
AATCTTGGTTAAAAGGAAAGACCAAGCGTGATAATTATTTAAGTTGTGAG
GAGAAGATCGATTGATTTGTCAGGGGTTAACTTTATGAATTTTTTTCTTG
CTTTTAAAAAAGAAGAAATTTAAAGAAAAAAAATAAAGACTGCTACAATT
CAGTGACACATATGTAGCATGAAATGGTTAAATGGTGGTAGTAAAGTGGC
GCATAAGGTATTAGGTAGGTGTATGTCCTCCATTTTTATGAGTAGATAGT
AACATTACTTAGCAAAACATAAGAGCATAAGTTGAATCCATAACCCATCA
TTGAATGTCGACATCTGAATAAAAGCTACTTTTCCCAATGGGCCTTTGTC
TGAGACGATAAACGAAAAATCAAAAATGTCAAATGTTGGTTCAAATTTTG
GTAAATTGTATCAATTCTTTGAAAAAATTGACTCTGGTTATACAAGGACC
AAAGAATGCAGCTTGGGAGGAACAAATAACGGTGCAGCTAGTAACAACAG
TTTTAAAACCAAATCAAACTGATAAGCCTTTTCGCCGCCCGCTAACGATG
TTTTCTTCAGAAACATTCAAACTTTGATTAAAAAGGAAAGAACTGCAGGG
TACCCAGGCTCCCCTTTGGCGCAAGTTGTTTTCTTGAATGAGAATGTTTT
AAAAAGAATTTAAACATATAGTAAAATGATAGTCGTTTGGAACGTTTATT
ACATACAGATTAGTGGACGTTAAATTTATGATATTCCAGAAAAGAATAAA
AGAGGGGGAAACGATGAGGAGGGTAGAAGATTTCTCAAGTTACAAAAGGA
GCCGGGAAAATTTTGTAAGAGAAAAACTGAAGAATTTCTAATCGGTAGTC
GACTACAGAATTTTTCGGAAAATTTTGGTCAAAAATCTGTAAAAAAAGTT
TGAATAAATAATTGGGAATATAGCTCAAGATTTGACATAAAAAGAAAGCT
TGAGTGTGTAATTCATACAACCATGTTTGAGATTCACGAAGAAAAGGTTG
GCTTGTTACCTTCTCACAGTGAACAAGAGAAATGCTACAAAAAGCAAGTC
ACTTTCGATGATGACTTGTGCTGTAACGAAGGTATAAAATTGAAAATAAA
TCTCAATAAAGTATAGGGGTAGAGCATTGAAACAAAAATGTTGTCTGAAA
TGCCCTTTTCCCTTCTTTTCAGGGTCGGACGGTCACCTACGGAATGGGAA
GACACCAGACGACAATAACAACAAAAGCAACACAAGCCTCAAGAATGGAG
TTGGGGCCAAAGGTCTTCCAAACTCACGACAGAAGCATCGAACGAAGCGA
ATACAGAGACGAAATAATGTCAACATAAAGCATAGTTCTGCCGGTGAATT
TGATGCCAATCAAGTCAAACGCTTCATATTCTTACAATCCCGTATTTACT
GGCTTTCCTCTTTAATCGGTGATCGACAAAGACCCTACAATTCCACCAAA
GGAGTCTTGGGACTTATGTTATGGATATTCAATTTAACTATTCATTTCGC
ATTAGACTTTTATGAAGCGAATACAGTGTTTCATGTGAGTTGGGCTTCAT
CTATTGGTGTTTTCCTCGTCATGTTTATAATATCGACCATCTTTTTAATA
AGACACACTGTTCGTTGGTTCATCAAGACCTTGAAAAAGCTGTCAAAAGA
CAAAATATACTGCAAAACATTCGTTAAATTGAGTTTCATTTTCAAGGTAA
GCTACAAGCATTCGTTCATTCCTCTTTTCACTTTTAATGACAATTAAAGG
TCATCAGTATATGGCTTAGAACTTTTCGGCCTCATTTTTTGCTGGCTAGC
TGATCTGAGTGAGGAGGGGGGATGAAAAGGAATGGTGAGATAGAAAGTGT
GTTTTACAAACCCTGGGATAACTGATTGTATCAAATGAAAGTAATATCAT
GTAAAAGTAGTGGTCAAGGCGACGATAAAGCTCAAAACAAAACTTCATGT
ACTATTCAAATCGATCTTTAGAATAGCCTTCGATTCACACTTCTATCTTT
TTTTATTGCAGCTATCACCATATGCAATGTTTATACTCTCCGTCTCGGGG
GCTGGGGCGCAGTATGGTTGCTATGCTTACGATGATGCATTGACTGTCTC
TTTCACAAAAGCAGGGCCAAACGGAACGAAAGTGGAATTGGTGCCTAATG
CTGCTCACATTGTGATCAACGTTGCACGTTTCACAAGTCTCATGCACATT
TATTATATGATGTTCTTGTTGTTAGGGTTCGCTCTCATCATATTTTTCAC
AATAGTACACACGCAAAGACTCTTCAATGGTACGTGCTATCTTCTTTTTA
CCCTTTTACGGGTGAACAAGTTTCTTCACAACTTTTTCAACGTTAAAACA
ATTTTGAAATTTTGATTTGAAAGCAATTTAGATGAGAAATGTTGTGAAAA
ATAGGGCTCGATAAAAACTTCGTGATAAAGGATGGTGAAAGCAAACAAAA
CATACAAGCAAAGACCCCCACTATTTGAGATATATAGGCGGAGAAAGGAT
TACTCTGGATTAAATACTTTAGAGAGGATATTATTAAACATAATCCTGTT
CGTTTCCAATCAAAACAATGTTGTCGTCGGTGTTAATGAACAGATTTGAT
TCACTATTAATCTTCAAAGGTTTGTAGTAGATTGACAAATATAATAATGG
TAGTGAATAAAAAAAATCAAGCGTGATCTGAGGGACGATGATCACATTAC
GATAACCTTCTTCTCTCTTCCTTCATAGCACACATTGGGAACGAACTGAA
AGCACACCCTCCGTCGATGACTTTCCAAGAAGCAGTAGACGATGTAGCAA
TGCGAACCAAATTGTTAAGAAGTGCTTCCGAAAATACCACGGTAAGTCTC
GGAGATTCTCTACTCGAAATGTCTGTAAAAACAAGTAGTTTTTCAATTAA
GTTTAAATTATTCATTGACATTTGAAGAGGTCACAGTTAGACTGCTATTT
TAAATAGTCCCAATTTTACATTGACCATCTTTTTGATTTCAGATTATCTT
CTCGACGCTTCTATTGGCAACCAGCTTATCCTTCGTCGTGAACGCATACA
ACTTTCTATTCATTAAACGTTACGCTATTTATATTTGGTTTGCCATCGCT
CCTCTCATATGGACAGTCTCAATTCTGATTGGGTCAGCCTTTGTGACGTC
ATCCTACCAAAAGCTAAAACTAGTAGTCATGCAGTCATGGGTAGAGATAC
CAGAGAAGTATGATGAGCTGTGGAGTAGACGAACTACCTCTAATAGAATC
AATACAGCAGCATCTATAAGAAAACCCACCTTAGATTGGCGCGCCGGTCT
TGAAAACATGCGGCGTCGAAAGGCCGAACGCGAGGCCACCGAACACGCTG
CTATGGAGGAGGAAGTTTTTGAGAAGGAAGATCTAAAAGAGAACTGTGTC
GTTGATATTAACGAAGAGATGGTTAATGAACAGATCAATGTCGATAAAGA
AAACGAAAAGAAAGAAAGTGTGTTTTCAAAGACCGTTCGAAATATCAACC
TTTTAAATAAATTCATCAAAGGTGCAAGCGACAAGAGTGCCGACGAGATC
GAAATGGGAGCTGAAGAAGTTAGAAAATCACTCTATGACAATGTGGAACA
ACAAAAAGATACTTTGACTGTTGAGCAATCAGCGACAGGTGAAGAAAGCT
CGTACAAAAGTGGTGAAGAGTTTCGTGAGACCACGGAAACAGGTGACCAG
TTAACTGTCCCTTCTTCTGATGCTGCTCTTTACAGTGATAATCCCATTGT
TAACGAACAAATACGTTTGAAAGAAGTGCAAGAATTGAGAAAACAGTCTA
TAGCCAGTGAAAACAAAGAAAACGACTCTTCGGCCTGGAAAAAGATTCCG
CGTATAAAATTTCGTAAAGCTACTAAACCAAACATTGAAATTGATAGGAC
TAGGGAAGAAATATCCACGTTTGAAAAGGAGAACAGCAAAAACGACGAGG
GGCCGCAAAGGACTAACAGCGTTAAATTCGATAAAGTGGTGCGCCTTGCA
CAGCAAGTCAACAAGTTCACAGACAACACAAAAAGGCAACAAATAAGACG
AAAGTTCAATTATGAAAAGTACATCAAATATCTGGAATTGACTTTAGATA
CTGTGGGATTTTCTTTGGGTAAAGTGACGATTACTTGGGACCGCGTTTCT
TTCTTTATCGTTCTTTTAATGACCCTGGTGGGTGTGTTTGCTCAGAACGC
ATTCCTCAAGTAATCAACAGTGAAGGCGATCGAAATAACTAAGATATAAA
TGATTCATTCAAACAATGATCTAACGACGGTGCATGTGCTCATGTTACCG
AAATGCATTTTCTTATCAAGATTCCGATATCAACCCTCCTCGCGTTATTG
TAGTTTCAATTTCATAGAATTATTTTTAAAATTTTTTGTAGATAATGGTT
CTTTTACTTCTTTTTTACGCATGTACATTTCAGTGAGAATTCAAATTCAA
AAAGAAACAACGACTTACAGAAATCTTTGGACAACACTTATCTTCTTTAC
ACGTGCAAGTATGAAAATAATGTGCAGTTAAAATCTACCCAATCCAGTTG
TNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010385XLOC_010385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018578-exon-sc0000301-1575043694:207050..207313TCONS_00018578-exon-sc0000301-1575043694:207050..207313Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1575043694:205568..206091TCONS_00018578-exon-sc0000301-1575043694:205568..206091Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1575043694:204985..205252TCONS_00018578-exon-sc0000301-1575043694:204985..205252Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1575043694:204423..204535TCONS_00018578-exon-sc0000301-1575043694:204423..204535Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1575043694:202711..204271TCONS_00018578-exon-sc0000301-1575043694:202711..204271Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1510915933:207050..207313TCONS_00018578-exon-sc0000301-1510915933:207050..207313Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1510915933:205568..206091TCONS_00018578-exon-sc0000301-1510915933:205568..206091Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1510915933:204985..205252TCONS_00018578-exon-sc0000301-1510915933:204985..205252Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1510915933:204423..204535TCONS_00018578-exon-sc0000301-1510915933:204423..204535Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1510915933:202711..204271TCONS_00018578-exon-sc0000301-1510915933:202711..204271Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1491911889:207050..207313TCONS_00018578-exon-sc0000301-1491911889:207050..207313Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1491911889:205568..206091TCONS_00018578-exon-sc0000301-1491911889:205568..206091Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1491911889:204985..205252TCONS_00018578-exon-sc0000301-1491911889:204985..205252Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1491911889:204423..204535TCONS_00018578-exon-sc0000301-1491911889:204423..204535Clytia hemisphaericaexon
TCONS_00018578-exon-sc0000301-1491911889:202711..204271TCONS_00018578-exon-sc0000301-1491911889:202711..204271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000301supercontigsc0000301:202711..207313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16969	0.0869984	0.241552	0.372748	9.66655	6.48096	5.60097	8.37222	7.09196	6.78445	4.93414	3.76769	4.68435	1.42424	0	0.273487	1.57203	2.46927	6.06387	6.80146	1.4092	4.18457	1.5218	1.76499	2.18419	1.72639	9.65974	7.04537	0.729106	0.682732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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