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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018399 ID=TCONS_00018399|Name=TCONS_00018399|organism=Clytia hemisphaerica|type=transcript|length=1766bpRun BLAST on NCBI transcript from alignment at sc0000297:317653..338151- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018399 ID=TCONS_00018399|Name=TCONS_00018399|organism=Clytia hemisphaerica|type=transcript|length=20499bp|location=Sequence derived from alignment at sc0000297:317653..338151- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018399 vs. Swiss-Prot (Human)
Match: ACSF2 (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2) HSP 1 Score: 241.121 bits (614), Expect = 8.718e-126 Identity = 109/236 (46.19%), Postives = 161/236 (68.22%), Query Frame = 2
Query: 911 LINGATQVYPTRGIDPAATLEAIENERCTVIYGIPTMFLDMLHHPTFKRENMKTLRTGCLGGQPCPPQLMRRIIEDMDCPEFTIGYGLTETSPIVTFAD-PNVEIERRMTTIGKTLPHMETKIID-EEGHIVPVNTSGELCFRGHCVFQGYWDDVIKTKEAIDENGWFHSGDLGQIDENGYCKVVGRLKDMIIRGGENIYPTEVENFLHNHPDIEDVQIVGIPDERFGEECCAWIK 1612
L+ GAT + + + LEAI ER T +YG PTMF+D+L+ P F ++ T+ G + G P PP+L+R II ++ + + YG TE SP VTFA P +E++ ++G+ +PH E +I++ E G + +NT GELC RG+CV GYW + KT+EA+D++ W+ +GD+ ++E G+CK+VGR KDMIIRGGENIYP E+E+F H HP +++VQ+VG+ D+R GEE CA I+
Sbjct: 323 LMYGATLILASPIFNGKKALEAISRERGTFLYGTPTMFVDILNQPDFSSYDISTMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENSP-VTFAHFPEDTVEQKAESVGRIMPHTEARIMNMEAGTLAKLNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIR 557 HSP 2 Score: 229.565 bits (584), Expect = 8.718e-126 Identity = 114/261 (43.68%), Postives = 172/261 (65.90%), Query Frame = 1
Query: 136 SYDHVVSEHKLIGKTIGQVFIETVEKFPDHEAVVFHRDKKRMTFAQLDEKVNKLAASIIGLGLQKGDRVGIWGQNHLEWMITFLASVKAGTILVNVNPAYQSNELEYALNKVGMKALFMTPEFKTSNYYDILQNVTPEILHSHPGELKSKKIPTLESVILTDGPAMSGAFSFEDALAIXXXXX-XXXXXXXXXXIQFDDPVNIQFTSGTTGNPKGATLTHHNLVNNAAVMSHITEI----TEEDRVCTPQPLYHCFGTVIG 903
SY ++ L KT+GQ T ++ P+ EA+V + R+TFAQL E+V+K A+ ++ +GL KGDR+G+WG N W++ LA+ +AG ILV+VNPAYQ+ ELEY L KVG KAL +FKT YY++L+ + PE+ ++ PG LKS+++P L +VI D P + G ++ +A G + +++ Q+ + DP+NIQFTSGTTG+PKGATL+H+N+VNN+ ++ ++ E+ R+ P PLYHC G+V G
Sbjct: 59 SYVQGCTKKHLNSKTVGQCLETTAQRVPEREALVVLHEDVRLTFAQLKEEVDKAASGLLSIGLCKGDRLGMWGPNSYAWVLMQLATAQAGIILVSVNPAYQAMELEYVLKKVGCKALVFPKQFKTQQYYNVLKQICPEVENAQPGALKSQRLPDLTTVISVDAP-LPGTLLLDEVVAAGSTRQHLDQLQYNQQFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNILGERLKLHEKTPEQLRMILPNPLYHCLGSVAG 318 The following BLAST results are available for this feature:
BLAST of TCONS_00018399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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