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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018327 ID=TCONS_00018327|Name=TCONS_00018327|organism=Clytia hemisphaerica|type=transcript|length=933bp
TGTATCAGAAATCAAGATGACAGCAGCTGAAGAGAAGGAGGCACAACTTG
AAACATACAACATCTCGACTGCAACTTCATACGTCGTTTATTCACCTACT
TCTTCATCAAAGATTGCTGAAGAGGTTCAAATCAGGCTACAATTCAGCAA
TTACATCATCAATCCAAACAAGTATCGTTTCAACAAAGTCATACGTATTC
TAGCACTGATGATCAAATTCATACATCAACTCAGATTGTCTCACAAAGGA
TTCATAAAATTTCACTCCAACTCAAGTCTGAAGGACGTTCTACCAACAGA
AGAAGAGATCAGACAAGCCAAGCTTTacttcttcaaaaaatcaacaGAAG
AATTGAAACACTTCACCagttcaaaaaagtttcaagataTCTCCCACGAA
AAGGATGGTATCATCTACCATACAGAACGAGTACTCAACATGAATGACAC
CACCATCGTTGGTCGATTCAATCAAAGCATCAAGGATCTCACTTCAACAT
CATTTGTCGTTCCAATGTTGGAAAAGTTTTCGCCAGTTGGAATTGCCATT
ATCAATGAGTTTCATTGGAATCATCCTTCCGCAAATCACTCTGGTGTCGA
AACATCACTTCGATACGTCAATAAAGAAGCATACATCCTCGAAGGACGAT
CAATTGTCAAACTTATCAGAAAGTTATGTCAACGTTGTCGTTATATTCTC
AAAAAGACGCTTGACGTTGTCATGGGGCCTGTTTCAAAACACGTTCTCAA
CATTGCACTACCCTTCTACACCACACAAGTGGATTTATGTGGACCCTTCG
ATTGTTACTCGCATCACCATAAAAGAACCACCATCAAAATTTGGTTTCTG
GTATTCTGCTGCTccacaactacaacaacgaGTATCAAAATCATGGAAGA
TTACAGCACCCAATCATTCGTCCAATCGTTCAT Run BLAST on NCBI protein sequence of TCONS_00018327-protein >TCONS_00018327-protein ID=TCONS_00018327-protein|Name=TCONS_00018327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
VSEIKMTAAEEKEAQLETYNISTATSYVVYSPTSSSKIAEEVQIRLQFSN
YIINPNKYRFNKVIRILALMIKFIHQLRLSHKGFIKFHSNSSLKDVLPTE
EEIRQAKLYFFKKSTEELKHFTSSKKFQDISHEKDGIIYHTERVLNMNDT
TIVGRFNQSIKDLTSTSFVVPMLEKFSPVGIAIINEFHWNHPSANHSGVE
TSLRYVNKEAYILEGRSIVKLIRKLCQRCRYILKKTLDVVMGPVSKHVLN
IALPFYTTQVDLCGPFDCYSHHHKRTTIKIWFLVFCCSTTTTTSIKIMED
YSTQSFVQSF Run BLAST on NCBI transcript from alignment at sc0000295:335665..336597 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018327 ID=TCONS_00018327|Name=TCONS_00018327|organism=Clytia hemisphaerica|type=transcript|length=933bp|location=Sequence derived from alignment at sc0000295:335665..336597 (Clytia hemisphaerica)
ATGAACGATTGGACGAATGATTGGGTGCTGTAATCTTCCATGATTTTGAT
ACtcgttgttgtagttgtggAGCAGCAGAATACCAGAAACCAAATTTTGA
TGGTGGTTCTTTTATGGTGATGCGAGTAACAATCGAAGGGTCCACATAAA
TCCACTTGTGTGGTGTAGAAGGGTAGTGCAATGTTGAGAACGTGTTTTGA
AACAGGCCCCATGACAACGTCAAGCGTCTTTTTGAGAATATAACGACAAC
GTTGACATAACTTTCTGATAAGTTTGACAATTGATCGTCCTTCGAGGATG
TATGCTTCTTTATTGACGTATCGAAGTGATGTTTCGACACCAGAGTGATT
TGCGGAAGGATGATTCCAATGAAACTCATTGATAATGGCAATTCCAACTG
GCGAAAACTTTTCCAACATTGGAACGACAAATGATGTTGAAGTGAGATCC
TTGATGCTTTGATTGAATCGACCAACGATGGTGGTGTCATTCATGTTGAG
TACTCGTTCTGTATGGTAGATGATACCATCCTTTTCGTGGGAGAtatctt
gaaacttttttgaactGGTGAAGTGTTTCAATTCTTCtgttgattttttg
aagaagtAAAGCTTGGCTTGTCTGATCTCTTCTTCTGTTGGTAGAACGTC
CTTCAGACTTGAGTTGGAGTGAAATTTTATGAATCCTTTGTGAGACAATC
TGAGTTGATGTATGAATTTGATCATCAGTGCTAGAATACGTATGACTTTG
TTGAAACGATACTTGTTTGGATTGATGATGTAATTGCTGAATTGTAGCCT
GATTTGAACCTCTTCAGCAATCTTTGATGAAGAAGTAGGTGAATAAACGA
CGTATGAAGTTGCAGTCGAGATGTTGTATGTTTCAAGTTGTGCCTCCTTC
TCTTCAGCTGCTGTCATCTTGATTTCTGATACA Coding sequence (CDS) from alignment at sc0000295:335665..336597 >TCONS_00018327 ID=TCONS_00018327|Name=TCONS_00018327|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0000295:335665..336597 (Clytia hemisphaerica)
GAACGATTGGACGAATGATTGGGTGCTGTAATCTTCCATGATTTTGATAC
tcgttgttgtagttgtggAGCAGCAGAATACCAGAAACCAAATTTTGATG
GTGGTTCTTTTATGGTGATGCGAGTAACAATCGAAGGGTCCACATAAATC
CACTTGTGTGGTGTAGAAGGGTAGTGCAATGTTGAGAACGTGTTTTGAAA
CAGGCCCCATGACAACGTCAAGCGTCTTTTTGAGAATATAACGACAACGT
TGACATAACTTTCTGATAAGTTTGACAATTGATCGTCCTTCGAGGATGTA
TGCTTCTTTATTGACGTATCGAAGTGATGTTTCGACACCAGAGTGATTTG
CGGAAGGATGATTCCAATGAAACTCATTGATAATGGCAATTCCAACTGGC
GAAAACTTTTCCAACATTGGAACGACAAATGATGTTGAAGTGAGATCCTT
GATGCTTTGATTGAATCGACCAACGATGGTGGTGTCATTCATGTTGAGTA
CTCGTTCTGTATGGTAGATGATACCATCCTTTTCGTGGGAGAtatcttga
aacttttttgaactGGTGAAGTGTTTCAATTCTTCtgttgattttttgaa
gaagtAAAGCTTGGCTTGTCTGATCTCTTCTTCTGTTGGTAGAACGTCCT
TCAGACTTGAGTTGGAGTGAAATTTTATGAATCCTTTGTGAGACAATCTG
AGTTGATGTATGAATTTGATCATCAGTGCTAGAATACGTATGACTTTGTT
GAAACGATACTTGTTTGGATTGATGATGTAATTGCTGAATTGTAGCCTGA
TTTGAACCTCTTCAGCAATCTTTGATGAAGAAGTAGGTGAATAAACGACG
TATGAAGTTGCAGTCGAGATGTTGTATGTTTCAAGTTGTGCCTCCTTCTC
TTCAGCTGCTGTCATCTTGATTTCTGATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018327-exon-sc0000295-1491911889:335665..336597 | TCONS_00018327-exon-sc0000295-1491911889:335665..336597 | Clytia hemisphaerica | exon |
| TCONS_00018327-exon-sc0000295-1510915933:335665..336597 | TCONS_00018327-exon-sc0000295-1510915933:335665..336597 | Clytia hemisphaerica | exon |
| TCONS_00018327-exon-sc0000295-1575043694:335665..336597 | TCONS_00018327-exon-sc0000295-1575043694:335665..336597 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000295 | supercontig | sc0000295:335665..336597 . |
Blast
The following BLAST results are available for this feature:
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