TCONS_00018271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018271
Unique NameTCONS_00018271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018271 ID=TCONS_00018271|Name=TCONS_00018271|organism=Clytia hemisphaerica|type=transcript|length=633bp
ATTGAAGATCTTGAAGCCAATATCATAGACATTTAGCCGTTTATTCTAAA
GCAATTTCAAGATGGTGGCGTTTTCTTTGGCAGCGTTGACGAATTCATCA
ATGGTCACTTCTCCGTCTCCATCTTCATCCATTTGCAAGAATAAACGTTC
AGCAAGCTTCTCTGGTGAATCATTATCGGATAGTTGCTTCTCGTCTCCTG
CCATCATGTTATAGATTGATCTTATAATTTCTGTTAATTCATCTTCGGTG
ATTGTGCCAGATTTATCAATATCATACATATTGAATGCCCAACGCAACTT
ATCTTCGCGACTACCGTGACATGTTATCGATAAACCGCAAATGAATTCTC
GGAAATCAATTGATTGATCACCGTTATTATCAAATGTCCGAAAGACATGG
CTAGCAAACTTCGAAGCGTCgccatctttgaaaaaattcctgTATATACT
TTCGAATTCTTTCTTGGTCATACGACCAGACGGGCAATCTTTTTGGAAAC
CTTTGTACCATTTACCAAGCTCGACATCACTGAATGCTGTACATTGTCGC
AGTTGGGTTAAGGTATCTGGTGGGATTTTACTGTTCTTTTTACCCATTCT
TCTTCTTGCCAAGTATTTGTTATTCTCTCCTTT
Run BLAST on NCBI

transcript from alignment at sc0000295:314322..317179+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018271 ID=TCONS_00018271|Name=TCONS_00018271|organism=Clytia hemisphaerica|type=transcript|length=2858bp|location=Sequence derived from alignment at sc0000295:314322..317179+ (Clytia hemisphaerica)
ATTGAAGATCTTGAAGCCAATATCATAGACATTTAGCCGTTTATTCTAAA
GGtgagaattctttgaaagatgaTAACCACTTTCACATTAACTCTATTTT
GAGAAAGATAAAAAAGGAATATTATGAACTTATTTTCGTACTGTGACCTA
GGATATCTTTAGAGATTTTCTAGATATCTTATCTGACAGCATCATAATGC
CTTTTGTCTCCTTAAAACGTTCATAGACaaagtttggaaaaatttttctt
tatcagaTCCCTCCCCTATTAAAATTATATTAGTTGTTTTCATTATAATT
TCAAATGTTTAGCTTGTCCCAATTCttcaaatttgttattttttctaagc
ATGTGATACTGATAGGGACTAGCTACTTCATATAAAGTTGTTGATTTCTT
TCCATTCTTTCCTTCATTCTGTGTTCTTTTAACAATAGATGGTCAAAAAG
GGATGTGTTTGAAAAGAAGAAGAGTGTTCACTCTTCAAGCCATCTTGGCT
TATCCCAAAAACCTCAActtgtaatgagaatattgttatCAAAGAGACTC
ACTAGAAAGAGTTACGTCTTTATTTTCGTTAAAGTTTCCTCCTcactttt
agttttttcttcttctcccCTTTGAAAACGGATGATTCACCACCAAGACA
ACCTTATAAGCATTTTTCCTActattttcaaatcatttcataTTGAAAAG
CATTTTTTCCATAGACTAATTAGTCAGTACAAAATATAATATCAATTGCA
ATAATAAAGAATCTCTCCTTTGCCAAACGACGTTCTAAAATCGTCGAAAA
ATTCGACATTATAGGTTATTATGAGTGCAATCAGATGTGAAATGTGATCT
TTTGAAATTCTAAACTATTTTTCTTCGGTGATGAGTTtttataaattaat
ttttaaatattaataatattatttttttctgaatacAGTGTGCTATTTAC
AAATTCTATTTTAAGTCAACTTTaagattttcatttcaaatgaatgttct
ttatttgattttaacATTCGCCAATTAAATGAATTAAATGATTGTTTCTG
GACCATATGTCAGGTTATAGGTCCTGTTTTGACCAATTGAGTAGACCTAC
CATCCAATGAGGGCACCACTGTAACTTTGTTATTCACTCACTTCATCACT
TCAATGCCACGagattctttattttttcgaaaaaacaaacaatgcaTTAG
ATGATTATCACATGCAAAGTTAGtcccaaaaataaaagaaaattttctaa
agGGTTGATGAATTATTAAGATCAGTTAACCCAccctaaaaaatttttta
ttgttgaaGCAATTTCAAGATGGTGGCGNACTAGCTACTTCATATAAAGT
TGTTGATTTCTTTCCATTCTTTCCTTCATTCTGTGTTCTTTTAACAACAG
ATGGTCAAAAAGGGATGTGTTTGAAAAGAAGAAGAGTGTTCACTCTTCAA
GCCATCATGGCTTATCCCAAAAACCTCAActtgtaatgagaatattgtta
tCAAAGAGACTCACTAGAAAAAGTTACGTCTTTATTTTCGTTAAAGTTTC
CTCCTcacttttagttttttcttcttctcccCTTTGAAAACGGATGATTC
ACCACCAAGACATCCTTATAAGCATTTTTCCTActattttcaaatcattt
cataTTGAAAAGCATTTTTTCCATAGACTAATTAGTCAGTACAAAATACA
GTATAATATCAATTGCAATAATAAAGAATCTCTCCTTTACCAAACGACGT
TCTAAAATCGTCGAAAAATTCGACATTATAGGTTATTATGAGTGCAATCA
GATGTGAAATGTGATCTTTTGAAATTCTAAACTATTTTTCTTCGGTGATG
AGTTtttataaattaatttttaaatattaataatattatttttttctgaa
tacAGTGTGCTATTTACAAATTCTATTTTAAGTCAACTTTaagattttca
tttcaaatgaatgttctttatttgattttaacATTCGCCAATTAAATGAA
TTAAATGATTGTTTCTGGACCATATGTCAGGTTAAAGGTCCTGTTTTGAC
CAATTGAGTAGACCTACCATCCAATGAGGGCACCACTGTAACTTTGTTAT
TCACTCACTTCATCACTTCAATGCCACGagattctttattttttcgaaaa
aacaaacaatgcaTTAGATGATTATCACATGCAAAGTTAGtcccaaaaat
aaaagaaaattttctaaagGGTTGATGAATTATTAAGATCAGTTAACCCA
ccctaaaaacttttttattgttgAAGCAATTTCAAGATGGTGGCGTTTTC
TTTGGCAGCGTTGACGAATTCATCAATGGTCACTTCTCCGTCTCCATCTT
CATCCATTTGCAAGAATAAACGTTCAGCAAGCTTCTCTGGTGAATCATTA
TCGGATAGTTGCTTCTCGTCTCCTGCCATCATGTTATAGATTGATCTTAT
AATTTCTGTTAATTCATCTTCGGTGATTGTGCCAGATTTATCAATATCAT
ACATATTGAATGCCCAACGCAACTTATCTTCGCGACTACCGTGACATGTT
ATCGATAAACCGCAAATGAATTCTCGGAAATCAATTGATTGATCACCGTT
ATTATCAAATGTCCGAAAGACATGGCTAGCAAACTTCGAAGCGTCgccat
ctttgaaaaaattcctgTATATACTTTCGAATTCTTTCTTGGTCATACGA
CCAGACGGGCAATCTTTTTGGAAACCTTTGTACCATTTACCAAGCTCGAC
ATCACTGAATGCTGTACATTGTCGCAGTTGGGTTAAGGTATCTGGTGGGA
TTTTACTGTTCTTTTTACCCATTCTTCTTCTTGCCAAGTATTTGTTATTC
TCTCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010266XLOC_010266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018271-exon-sc0000295-1491911889:314322..314372TCONS_00018271-exon-sc0000295-1491911889:314322..314372Clytia hemisphaericaexon
TCONS_00018271-exon-sc0000295-1510915933:314322..314372TCONS_00018271-exon-sc0000295-1510915933:314322..314372Clytia hemisphaericaexon
TCONS_00018271-exon-sc0000295-1575043694:314322..314372TCONS_00018271-exon-sc0000295-1575043694:314322..314372Clytia hemisphaericaexon
TCONS_00018271-exon-sc0000295-1491911889:316598..317179TCONS_00018271-exon-sc0000295-1491911889:316598..317179Clytia hemisphaericaexon
TCONS_00018271-exon-sc0000295-1510915933:316598..317179TCONS_00018271-exon-sc0000295-1510915933:316598..317179Clytia hemisphaericaexon
TCONS_00018271-exon-sc0000295-1575043694:316598..317179TCONS_00018271-exon-sc0000295-1575043694:316598..317179Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:314322..317179 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107732	0	0.170371	0	0.433525	0.030824	60.7779	63.0904	70.3046	57.5273	24.9912	36.8566	37.5135	26.7217	11.1527	7.55035	21.5072	26.3437	43.338	55.8959	35.3888	34.036	12.8661	14.2862	18.3493	22.7707	6.44312	5.01285	0.204212	0.0476614
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00018271 vs. Swiss-Prot (Human)
Match: HPCL1 (Hippocalcin-like protein 1 OS=Homo sapiens GN=HPCAL1 PE=1 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 2.160e-69
Identity = 97/183 (53.01%), Postives = 134/183 (73.22%), Query Frame = -1 
Query:   49 MGKKNSKIPPDTLTQLRQCTAFSDVELGKWYKGFQKDCPSGRMTKKEFESIYRNFFKDGDASKFASHVFRTFDNNGDQSIDFREFICGLSITCHGSREDKLRWAFNMYDIDKSGTITEDELTEIIRSIYNMMAGDEKQLSDNDSPEKLAERLFLQMDEDGDGEVTIDEFVNAAKENATILKLL 597
            MGK+NSK+ P+ L  LR+ T F+D EL +WYKGF KDCP+G +T  EF+ IY NFF  GDASKFA HVFRTFD NGD +IDFREFI  LS+T  G  E KL+WAF+MYD+D +G I+  E+ EI+++IY M++   K   D  +PEK  +++F QMD + DG+++++EF+  AK + +I++LL
Sbjct:    1 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGDASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLL 183
The following BLAST results are available for this feature:
BLAST of TCONS_00018271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HPCL12.160e-6953.01Hippocalcin-like protein 1 OS=Homo sapiens GN=HPCA... [more]
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