TCONS_00018055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018055
Unique NameTCONS_00018055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length755

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018055 ID=TCONS_00018055|Name=TCONS_00018055|organism=Clytia hemisphaerica|type=transcript|length=755bp
GAGCTTGGCCATGGATTGCTTCTATTCAAACTGCACGAGGTTTTCATACC
TGTGGTGGTACCATCTTGAATCCAAACTGGGTGCTGACAGCCAGTCACTG
TGTAGCTGCAAATCGTAATAGTCCCGGGTATTTTAGATTGGTAGCAGGCG
TGCACAACAAAACGAATCATAACGAAACCACACAGCAAAAAGTTCTAGTT
AAAAGAATTATCGTTCATCCAGACTACAGCTCACGTATTCTTAGAAACGA
TATTGCTTTGATTGAATTATCATCTCCATTCAGATTGAATGACCGTGTTG
TCAAAGCTTGTATGCCACAACATGGAGTTTATCCACCAGCTGGAAGTGGA
AGCAAATGTTTCATTGCTGgatGGGGTACAACAAATTATCCTGGGCGAAA
CTACCCAGATATTCTACAACAAGTTAAAATGCCCATTGTAAAAACACCTC
ACCGTGGATGTAGATATCAGAGTGTTGTATGTGCTGGATATGGATTTAAT
CCACAACCTGATGGTTCACAATATCCGAATGCTTGTCGTGGTGATTCTGG
TGGCCCATTGATGTGCAGGAAATCTGATGGCTCATGGCAAGTGGATGGTG
TCACAAGCTGGGTTTATACTTATTGCAAATACTACACAGCTTTTACGCCA
GTTAATAAATATATATCTTGGATTAAGCAGTATGTACCCAATTTATAATT
TTGTCAAATAGCGTTATTGCagtttaattttcaaaacagaATGAATATAA
AAGCT
Run BLAST on NCBI

transcript from alignment at sc0000284:326087..328722+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018055 ID=TCONS_00018055|Name=TCONS_00018055|organism=Clytia hemisphaerica|type=transcript|length=2636bp|location=Sequence derived from alignment at sc0000284:326087..328722+ (Clytia hemisphaerica)
GAGCTTGGCCATGGATTGCTTCTATTCAAACTGCACGAGGTTTTCATACC
TGTGGTGGTACCATCTTGAATCCAAACTGGGTAATTTTCATAATAAGTCC
GGCGCTCataaagacaatgaaattttAATCGTCAGGCTCGGCAGAACAAT
cgttaaagtggggaggctgaaggctcaaaatgagataaaatttgctaatA
ATTTGAGAATAAAAagctcatttgctcaaaagtggggaggctgaagtctc
tcCAGTCTCCCTCCTTCCGCTAGGCCTGGTCATTGAGAAAGGTTCAAAAA
TATATGAAACTCGCCTGTGTGAAGAATGGAACTAGGCAACTAGTCTGGCC
GAAATACAATAAAACAGGGGTGAACGTAGACAAAAATTCCGCTtaaactt
tcttggtaccgttggaagcggaattttatgtagattatcatactcagagc
ctcatgatgaggcccttgggaaaacttttggtaaaatcaagTCTGAAGTG
TACTTCTTTGCCCCAAATATATACGTTTTTGAGCAGTGTATTGGTCATCA
GCTACACTAAAAACCTATCAAAgctattcaaagtctttgaaagtcagcgC
TATCCCCATGTGCTTTCGCCCAAAGGCTTATGCCTTGCAGTtgacccatt
tcatatcagggATGATACTGTTTAATTGCTTGTGGTTTCCAGAAATGTTT
GGTTGGgaatcccccccccccagatTTTTGAGACAGGGTATACATTCAGT
GTTTTAAAAAGCACCTACCATTGCAAAGATAGCACTTTTCAAGGCATTTT
ATATCGAAAATGGGTCCTTAGTGTTACCAATTTTTTTCCCCAAGGGCCTC
AACGTGAGGCTTTGAGTATGTTAAACCTCGTAAAATTCCGCTTCCAAAGA
TACCAAGAAAATTTacgcggaatttttttcaaggtcaacttttatttctg
cCAGACTATACTAACTCAGTCACTTTACATTTTCTTATGGATTAACCAAC
TTTGAAACATTCTTAACAATTTTTTAGGTGCTGACAGCCAGTCACTGTGT
AGCTGCAAATCGTAATAGTCCCGGGTATTTTAGATTGGTAGCAGGCGTGC
ACAACAAAACGAATCATAACGAAACCACACAGCAAAAAGTTCTAGTTAAA
AGAATTATCGTTCATCCAGACTACAGCTCACGTATTCTTAGAAACGATAT
TGCTTTGATTGAATTATCATCTCCATTCAGATTGAATGACCGTGTTGTCA
AAGCTTGTATGCCACAACATGGAGTTTATCCACCAGCTGGAAGTGGAAGC
AAATGTTTCATTGCTGGTAAGTCAACAACTTCACAGtgtgtacacatttt
tttaataagaacatctaaacatctaatatttttgaagccttcggatgttc
ttaaagttttgagttttaattttcaatcaaaaatatatttcaaaacaaaa
aatttaaaaatccataACTCGGAGTTTCATGCTCTAAGCAATCATCAGAT
GTAACTCAGAGGGATTGTAACATCAGATGTAAATCATCagagttttaatt
ttcttaacatcttctttttttcaacattccaTGAGTATATTTCTGTCCAA
TTCtctaagaaatcgggtattctagagtccgcaaagcctgaaaatgttct
taatctgTTAACTGTTATAACGTTATAACCTGAAGAAATCTAATACCAAT
CCCATCGAGAAATTATCCTAAATTTTCATTCCCAAGAAAAATACTTAACA
GTAACTCCTCGctggattttttaaataaaaaaattgaaatcgtcACCCAT
CAAAACCAATCTATTTTCCATCCACATTTGAATGCATAAACAATCCCTTG
TGAATCATTGAGATAGAGGTTTCCTTGAGGAATCATAAGACAAGTGAAGG
AATGCTTAGAAGGAGAAGGTTTAAGTGTTAAACTTGAAAACTTGGTCGAA
GTTCTACCGACAGCAGACTGACGACTAAACAACTATATACCTTATACCTT
TCAATAAGACCTTGTAAACACTTGTCcggcgaccgtagtacagtagtaga
gcatccggctatgGTGGACAAGGTCTTTGGTCGAGAGGAGCCTGTGGGTC
ACCTCCGACTGCTCTCACCAGACTTACTTTACTTTTCTCGTTCAGAGTAG
AAGCAAGGGAATTGGTTAAAATAAGTAAAATTCCAACAAAACCATATTTA
TATGTAAAGAATCGTTTTAATTCCTCATGActggttttcaatttttttag
gatGGGGTACAACAAATTATCCTGGGCGAAACTACCCAGATATTCTACAA
CAAGTTAAAATGCCCATTGTAAAAACACCTCACCGTGGATGTAGATATCA
GAGTGTTGTATGTGCTGGATATGGATTTAATCCACAACCTGATGGTTCAC
AATATCCGAATGCTTGTCGTGGTGATTCTGGTGGCCCATTGATGTGCAGG
AAATCTGATGGCTCATGGCAAGTGGATGGTGTCACAAGCTGGGTTTATAC
TTATTGCAAATACTACACAGCTTTTACGCCAGTTAATAAATATATATCTT
GGATTAAGCAGTATGTACCCAATTTATAATTTTGTCAAATAGCGTTATTG
CagtttaattttcaaaacagaATGAATATAAAAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010122XLOC_010122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018055-exon-sc0000284-1491911889:326087..326166TCONS_00018055-exon-sc0000284-1491911889:326087..326166Clytia hemisphaericaexon
TCONS_00018055-exon-sc0000284-1510915933:326087..326166TCONS_00018055-exon-sc0000284-1510915933:326087..326166Clytia hemisphaericaexon
TCONS_00018055-exon-sc0000284-1575043694:326087..326166TCONS_00018055-exon-sc0000284-1575043694:326087..326166Clytia hemisphaericaexon
TCONS_00018055-exon-sc0000284-1491911889:327114..327402TCONS_00018055-exon-sc0000284-1491911889:327114..327402Clytia hemisphaericaexon
TCONS_00018055-exon-sc0000284-1510915933:327114..327402TCONS_00018055-exon-sc0000284-1510915933:327114..327402Clytia hemisphaericaexon
TCONS_00018055-exon-sc0000284-1575043694:327114..327402TCONS_00018055-exon-sc0000284-1575043694:327114..327402Clytia hemisphaericaexon
TCONS_00018055-exon-sc0000284-1491911889:328337..328722TCONS_00018055-exon-sc0000284-1491911889:328337..328722Clytia hemisphaericaexon
TCONS_00018055-exon-sc0000284-1510915933:328337..328722TCONS_00018055-exon-sc0000284-1510915933:328337..328722Clytia hemisphaericaexon
TCONS_00018055-exon-sc0000284-1575043694:328337..328722TCONS_00018055-exon-sc0000284-1575043694:328337..328722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000284supercontigsc0000284:326087..328722 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0876259	0	0	0.365465	0.109511	0.271293	0.065831	0.0620835	14.5702	11.2812	8.04189	18.0084	2.78255	3.86404	16.4602	14.2034	26.1555	26.6189	10.7733	13.9323	10.4341	14.6435	0	0.190174	1.0818	2.27785
Blast
[Close]
BLAST of TCONS_00018055 vs. Swiss-Prot (Human)
Match: CEL2A (Chymotrypsin-like elastase family member 2A OS=Homo sapiens GN=CELA2A PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.799e-40
Identity = 89/248 (35.89%), Postives = 135/248 (54.44%), Query Frame = 3 
Query:    3 AWPWIASIQ---TARGFHTCGGTILNPNWVLTASHCVAANRNSPGYFRLVAGVHNKTNHNETTQQKVLVKRIIVHPDYSSRILR--NDIALIELSSPFRLNDRVVKACMPQHGVYPPAGSGSKCFIAGWGTTNYPGRNYPDILQQVKMPIVKTPHRGCRYQ---------SVVCAGYGFNPQPDGSQYPNACRGDSGGPLMCRKSDGSWQVDGVTSWVYTY-CKYY---TAFTPVNKYISWIKQYVPN 692
            +WPW  S+Q     + +HTCGG+++  +WVLTA+HC++++R     +R+  G HN     E+    V V +I+VH D++S  +   NDIAL++L++P  L D++  AC+P  G   P  +   C++ GWG     G   PD+LQQ ++ +V   +  C            S++CAG        G    ++C GDSGGPL C+ SDG WQV G+ S+     C YY   + FT V+ YI WI   + N
Sbjct:   39 SWPWQVSLQYSSNGKWYHTCGGSLIANSWVLTAAHCISSSRT----YRVGLGRHNLYVA-ESGSLAVSVSKIVVHKDWNSNQISKGNDIALLKLANPVSLTDKIQLACLPPAGTILP--NNYPCYVTGWGRLQTNGA-VPDVLQQGRLLVVD--YATCSSSAWWGSSVKTSMICAG--------GDGVISSCNGDSGGPLNCQASDGRWQVHGIVSFGSRLGCNYYHKPSVFTRVSNYIDWINSVIAN 268
The following BLAST results are available for this feature:
BLAST of TCONS_00018055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CEL2A5.799e-4035.89Chymotrypsin-like elastase family member 2A OS=Hom... [more]
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