TCONS_00017810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017810
Unique NameTCONS_00017810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1093

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017810 ID=TCONS_00017810|Name=TCONS_00017810|organism=Clytia hemisphaerica|type=transcript|length=1093bp
TCAATGGGTGACGTTTTAATTTAGACACTTTCTGTACCAACAAATGGAGC
ATGTTTGAAATACTATACTCCcgccaaaattgttaaaacctGTCATTTCA
GATTTAATCCTAGATTTAATCATGGgcttgtgacacaggggtgtacttAA
GGAATTAGTCAGCTGTTACACTTTACTAATCTTATTGTCAATTATATTGT
AAAACGAAAATGCCAAAGGGTTGAAATATTTCTAACGAGTTTATATAGAC
AGGGTGCAGACACTCACATTTCAGAAGCAGTGTCGCTGTTCCAACCGATA
TTGCAGCCTGGACACACCCAGCTGATGCCATCTCCGTCCTCTTCCTGCGT
CATTTCCTCAGTTTCCTCTACTGTATCTGTGGGGAGTTGTTCCTCGGCCT
GTTGTCTTTCTTTTGCCGCAAGATTTTCCATTGCCTCTATTTCTATTTCA
TCCATCTCTTCCTCTATATTGAAGTATTCCTCATCCTCATCTTCATCCGA
TTGTGCGGCCAGGGCTTCCNCTCTTTCTTTTGCCGCACGATTTTCGATTG
CCTCTATTTCTATTTCATCTATCTCTTCCTCTATATTGAAGTATTCCTCA
TCCTCATCTTCATCCGATTGTGCGGCCAGGGCTTCCTCTAGCTCCAATGT
CAATTGCTCTTCGACGTCACTATCATCAGTGTCTGTATCAACCTCTCTGT
CATTGATGACGTTCGATGGCCCTGGTTGTTCACCATCGTCCACACTGGCT
TGTGCTTGGGTCTGTGCTGGTTGCTGTGAAACCTCAAGGACTTCAGTAGT
TGTAGCCGCCTGGGTATCCAGCATGTCGCAAGCATTTTTGCCAGGCTCAC
ATTTCTTGCCTCTGGTTTGTTTGTTGGTTACAGAACATGTTCGGTTGTTT
TCGAGAAAGTCTAGAACACTATCATTGAATATATTTAAATCAAAGCCATC
AACAACATGAACACGTGAAGGTATCTTCTTTGCTATCTTAGTACGGTCCA
GTGGGTGAATGCCACACGTTCGAAATCCTAAAATGACGTGGAATGATAGA
ATTCATGAAAATGTGATATCGACTGTTCATGGCTTCATTAGAC
Run BLAST on NCBI

transcript from alignment at sc0000276:333660..335289-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017810 ID=TCONS_00017810|Name=TCONS_00017810|organism=Clytia hemisphaerica|type=transcript|length=1630bp|location=Sequence derived from alignment at sc0000276:333660..335289- (Clytia hemisphaerica)
TCAATGGGTGACGTTTTAATTTAGACACTTTCTGTACCAACAAATGGAGC
ATGTTTGAAATACTATACTCCCGCCAAAATTGTTAAAACCTGTCATTTCA
GATTTAATCCTAGATTTAATCATGGGCTTGTGACACAGGGGTGTACTTAA
GGAATTAGTCAGCTGTTACACTTTACTAATCTTATTGTCAATTATATTGT
AAAACGAAAATGCCAAAGGGTTGAAATATTTCTAACGAGTTTATATAGAC
AGGGTGCAGACACTCACATTTCAGAAGCAGTGTCGCTGTTCCAACCGATA
TTGCAGCCTGGACACACCCAGCTGATGCCATCTCCGTCCTCTTCCTGCGT
CATTTCCTCAGTTTCCTCTACTGTATCTGTGGGGAGTTGTTCCTCGGCCT
GTTGTCTTTCTTTTGCCGCAAGATTTTCCATTGCCTCTATTTCTATTTCA
TCCATCTCTTCCTCTATATTGAAGTATTCCTCATCCTCATCTTCATCCGA
TTGTGCGGCCAGGGCTTCCNCTCTTTCTTTTGCCGCACGATTTTCGATTG
CCTCTATTTCTATTTCATCTATCTCTTCCTCTATATTGAAGTATTCCTCA
TCCTCATCTTCATCCGATTGTGCGGCCAGGGCTTCCTCTAGCTCCAATGT
CAATTGCTCTTCGACGTCACTATCATCAGTGTCTGTATCAACCTCTCTGT
CATTGATGACGTTCGATGGCCCTGGTTGTTCACCATCGTCCACACTGGCT
TGTGCTTGGGTCTGTGCTGGTTGCTGTGAAACCTCAAGGACTTCAGTAGT
TGTAGCCGCCTGGGTATCCAGCATGTCGCAAGCATTTTTGCCAGGCTCAC
ATTTCTTGCCTCTGGTTTGTTTGTATAAGGGAGAAAACAGTTGTCATTTC
AAGTATTTCAAGAAGAGCAAGATTTTTCCATTGTGTGACATCAACGACCG
GTTTTCCATCTTTTTAACGAGGACAAAACCGACTGTTAAAATCCTGGGGG
GGGTACTAGGGTTGAGGGAGAGATTGCTATTTGCTGACAAATCAGAAAGT
CTTAAATTAGTCTCTCTAAGGGTCACCTTAGAGAGACTGATTTAAAACTT
TCTGATTTTTCCGACCCTTCGAGAGACTTTGGAAGGTGAAAAAACCGACC
GACCTTAAGCCACGCACATACCCAGCACTCATTTTTGCCTAAGTAACACT
CCCCACCCGGGTTAAAATCTTTGTAGTGGATTTGGTGAACAAATAAGCAT
ATCTGTAAGCTTGATGATTGGTGTATACTTGGGTGTAACTTTCGTTTATC
TTTTCCATTTTAATGACTCCCTTTTTTCGGAAGAATTCAATTCACAATAT
AGCTAGGCGTAACCGAGTCTGTTTAAAAAAAGGAAATATGCTTATAAGAA
CGTGTACTCACTGGTTACAGAACATGTTCGGTTGTTTTCGAGAAAGTCTA
GAACACTATCATTGAATATATTTAAATCAAAGCCATCAACAACATGAACA
CGTGAAGGTATCTTCTTTGCTATCTTAGTACGGTCCAGTGGGTGAATGCC
ACACGTTCGAAATCCTAAAATGACGTGGAATGATAGAATTCATGAAAATG
TGATATCGACTGTTCATGGCTTCATTAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009984XLOC_009984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017810-exon-sc0000276-1575043694:334416..335289TCONS_00017810-exon-sc0000276-1575043694:334416..335289Clytia hemisphaericaexon
TCONS_00017810-exon-sc0000276-1575043694:333660..333878TCONS_00017810-exon-sc0000276-1575043694:333660..333878Clytia hemisphaericaexon
TCONS_00017810-exon-sc0000276-1510915933:334416..335289TCONS_00017810-exon-sc0000276-1510915933:334416..335289Clytia hemisphaericaexon
TCONS_00017810-exon-sc0000276-1510915933:333660..333878TCONS_00017810-exon-sc0000276-1510915933:333660..333878Clytia hemisphaericaexon
TCONS_00017810-exon-sc0000276-1491911889:334416..335289TCONS_00017810-exon-sc0000276-1491911889:334416..335289Clytia hemisphaericaexon
TCONS_00017810-exon-sc0000276-1491911889:333660..333878TCONS_00017810-exon-sc0000276-1491911889:333660..333878Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:333660..335289 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.67062	1.13473	0.652961	0.264084	3.50372	3.72769	6.58504	5.61141	4.80155	5.89851	8.02576	4.19266	5.31593	6.0966	2.96933	3.82855	5.6105	4.9586	6.3339	6.21542	5.06417	4.11289	2.11366	3.02659	4.9419	5.25905	6.02677	6.1313	5.63468	5.09655
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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