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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017809 ID=TCONS_00017809|Name=TCONS_00017809|organism=Clytia hemisphaerica|type=transcript|length=1313bpRun BLAST on NCBI protein sequence of TCONS_00017809-protein >TCONS_00017809-protein ID=TCONS_00017809-protein|Name=TCONS_00017809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp SSGYEIRELQRKRTILGQECMEATNQSTLPAAAVIAVKRNLFTEESNTVERun BLAST on NCBI transcript from alignment at sc0000276:285251..312220- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017809 ID=TCONS_00017809|Name=TCONS_00017809|organism=Clytia hemisphaerica|type=transcript|length=26970bp|location=Sequence derived from alignment at sc0000276:285251..312220- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000276:285251..312220- >TCONS_00017809 ID=TCONS_00017809|Name=TCONS_00017809|organism=Clytia hemisphaerica|type=CDS|length=13110bp|location=Sequence derived from alignment at sc0000276:285251..312220- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017809 vs. Swiss-Prot (Human)
Match: R3HD2 (R3H domain-containing protein 2 OS=Homo sapiens GN=R3HDM2 PE=1 SV=3) HSP 1 Score: 157.532 bits (397), Expect = 4.015e-41 Identity = 68/113 (60.18%), Postives = 90/113 (79.65%), Query Frame = 2
Query: 701 LNRENSLDYKDSTGVDLHDFMVKTLKENPRDRLMLLKLERDFTEFIEDKNKTGYKYNQMTSYHRMLVHRVAAYFGLDHNIDNTGKAVVISKTPSSRVPETKFQAYCSREYTDE 1039
L+R++S +Y DSTG+DLH+F+V TLK+NPRDR+MLLKLE++ EFI D N K+ QMTSYHRML+HRVAAYFG+DHN+D TGKAV+I+KT ++R+PE +F + E E
Sbjct: 138 LSRDSSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTE 250 The following BLAST results are available for this feature:
BLAST of TCONS_00017809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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