TCONS_00017805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017805
Unique NameTCONS_00017805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017805 ID=TCONS_00017805|Name=TCONS_00017805|organism=Clytia hemisphaerica|type=transcript|length=2251bp
TTCATTTATGGGAGGTTTTATTGATTCGGGGGTCTGCAATTTGTTTTTGA
GTACAATACGTAATGTTTCACCACCACAGAATCgcagaaaaaaatcgatt
tCATCAAGCAAAACTCGTGGACCTTTTACAGAAGAAAACAGAACGGTTTT
GTAGAAATTCGTTTTAAACTATGGTAAATTTTACTTGCATTACTTGTcat
gttttatttcaaaatgctGACTTTCAACGTGACCATTACAAGACAGACTG
GCATCGTTACAACTTGAAGAGAAAGATTGTAGAACTTCAGCCAGTAACGG
AAGATGATTTCGATAAGAAAGTTGCATTTCAAACAAAGAAGAAAGATGAG
AAACTCTCAGGGGGAAGAACAGCAACAGAATGCCAAgcttgtaataaaaa
attttcatcagAAAAAGCATATGATAACCATGTGAAGTCAAAGAAACATA
GAGAGCAAGAAGCCAAACAGGCTAAAAATGGTAGTCAAGAAATAAAAGAT
GACAAAAAGAGCAAGAAAGACGAACGAAAACCATGCGTCAAACCTAAACG
TGGATATATGCCGCCCATGGAAGATACCGATGACGTTATAGATGATGATT
CTGACGAATGGGAAGATGTTGAAGATGACGTCATTAGCGGTGGTGACGTG
GAAACGGATGACGAAGAATCGGAAGCTATCCCACAATCCAACTGTCTGTT
TTGTCCACACGAGAGCATTTCCGTAGAAGATAATATGCGACACATGTCCA
AATCGCATAGTTTCTTTATGCCCGATTTAAACTTTATTACGGATCTGGAA
GGCTTTTTAATCTACCTTGGTGCTAAAGTCGGTGATGGGAAAATCTGTTT
GCTTTGTAATAACCGAAGCAGACAATTCCGTACTATTCAAGCATGTCAAG
AGCATATGGTTGATAAGGGTCACTGCATGCTTGACTATCAAGGAGATTCT
ATGTTGGAGTACGCCGATTTTTATGATTTCTCGAGCAGTTATCCTGATCA
TAACGAAAACATGGATGTGGATAGTGAGTTATCCACCAATGATGGCTCAA
TGACTGTCGATCCACACACTCTGGAGTTAGTACTACCAAATGGTGTAAGA
GTCGGCCATCGTGCATTGAGAAGATACTACAATCAAAATACGGTGGCAGA
GATGTTCCAAACAAAGAATCGTGCTATGATTACTGGTGTTAATACGCAAT
ATAAAGCTCTGGGACTTTCTGGTGCTACGCTAACCGTAGCTATCAGAAAG
AAGATTGTAGCCAGGAAGTTTGAGATTCGTCATCGAGCAGATCAACGTAT
GAGAATAGGGATGAAGGGAAATAGTGTTCTTCAAACACATTTCAGGAAGC
AAGTGATGAACTGTGGTTAATTTTTATGCTTGATCATCGTTGGTGTTGGC
TAAGATTAATTTTGTTAACATCCAATTTTCATAACTACACTCCTTTTGAT
ttactattttttttaaatcatttattATACTTAATTTTGTTTGGTAATAA
TCGGCAGGGTGTCTCTTAAATATGTGATATTTTCACTTTGGGGTTTTTGG
TTGATTTAAGTCAGCTATAGCATTAAGTTTATATGCTTTTATTCATGCAC
TTTCAGAGATTGCCCTTCTTTAATAAAATAAGTAGATATATCTAGACCGT
GCCTGCCCCTTTTTTCAATAGTCGGAGGCTATTTTCCATGCGAAATCTTC
TACTTATTCTTGTCTTTCACCGGTATCGGGATGTTTAAAGCAATTAGAGA
GATTGATGGGACGAAGGGGGGGGGTTGTATCTTTTCAACTTCTATCTACC
ATCTAATAATTCTATTTAAGGCTTTTCATGAATTATTTTGAAAGCAACGC
CtgtctcgttttgaaaccattaccaagtaAATTAACTTGAATCAAGTGTT
ACTTTTAATAACAGAGCAAAAACCATAGTAATATTTTGAGAACGAGGTAA
TTTtcgctcgtgacgtaatttatagaCAGATCTATTAAGAATACCTTACC
TTCATTGACTTGGAttggaaatgaagccacttatttcccatccaaaacta
CCGTGGCTGATATGGGCAACCCTACCCTTATCTTAGATGGGCGGACAATg
ttaggcggccgcctatcATCTCGGGCGGCCGCCTGACTAGGGTGGGCGGC
CGCCTGTTTCTAGAGGTTGGTCATGAAATtaacattctggtctgtatttt
atttgatgttacttaggcggccgcctatttttgattttaacttAGGCGGC
C
Run BLAST on NCBI

protein sequence of TCONS_00017805-protein

>TCONS_00017805-protein ID=TCONS_00017805-protein|Name=TCONS_00017805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MVNFTCITCHVLFQNADFQRDHYKTDWHRYNLKRKIVELQPVTEDDFDKK
VAFQTKKKDEKLSGGRTATECQACNKKFSSEKAYDNHVKSKKHREQEAKQ
AKNGSQEIKDDKKSKKDERKPCVKPKRGYMPPMEDTDDVIDDDSDEWEDV
EDDVISGGDVETDDEESEAIPQSNCLFCPHESISVEDNMRHMSKSHSFFM
PDLNFITDLEGFLIYLGAKVGDGKICLLCNNRSRQFRTIQACQEHMVDKG
HCMLDYQGDSMLEYADFYDFSSSYPDHNENMDVDSELSTNDGSMTVDPHT
LELVLPNGVRVGHRALRRYYNQNTVAEMFQTKNRAMITGVNTQYKALGLS
GATLTVAIRKKIVARKFEIRHRADQRMRIGMKGNSVLQTHFRKQVMNCG
Run BLAST on NCBI

transcript from alignment at sc0000276:255689..265142-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017805 ID=TCONS_00017805|Name=TCONS_00017805|organism=Clytia hemisphaerica|type=transcript|length=9454bp|location=Sequence derived from alignment at sc0000276:255689..265142- (Clytia hemisphaerica)
TTCATTTATGGGAGGTTTTATTGATTCGGGGGTCTGCAATTTGTTTTTGA
GTACAATACGTAATGTTTCACCACCACAGAATCGCAGAAAAAAATCGATT
TCATCAAGCAAAACTCGTGGACCTTTTACAGAAGAAAACAGAACGGTTTT
GTAGAAATTCGTTTTAAACTATGGTAAATTTTACTTGCATTACTTGTCAT
GTTTTATTTCAAAATGCTGACTTTCAACGTGACCATTACAAGACAGACTG
GCATCGTTACAACTTGAAGAGAAAGATTGTAGAACTTCAGCCAGTAACGG
AAGATGATTTCGATAAGAAAGTTGCATTTCAAACAAAGAAGAAAGATGAG
AAACTCTCAGGGGGAAGAACAGCAACAGAATGCCAAGCTTGTAATAAAAA
ATTTTCATCAGAAAAAGCATATGATAACCATGTGAAGTCAAAGAAACATA
GAGAGCAAGAAGCCAAACAGGCTAAAAATGGTAGTCAAGAAATAAAAGGT
ATAAGTCATAAGTTTTTTTTTCATTTGGTTGGCAACAATGTCATCCCTCA
GGAAGCAAGTCAAATTTTTCAACCTGCAGACCTAGACGGGATAGGTTATT
TCAGCTAGGGTTATAGGGTTCACATTGCGTCAATCCATTCAGCTGACGCA
CGTTTATGTGTCCAACTAACGCCAAAGATCTTCTGCGTACAACTGAAATG
TTTTTGGCGCATTGGCGTAAGGGTACTTACAAAAATTGTTTGATTTTCAG
TTGGCGTAAAGTAATAATTCCAGCTCGACGTGAATGACTCCACAATTCAT
CGATCTTTAGCTTTCATTTGGCTAAATTAGCTTTTGCTCGCTTACACTTG
CATCAATTTATTAATCATGTAGGCGCATGCGCCTCTTTTCCCATCTTGCA
CCCTTATTAAAAAATTGAATGTTGGTTCAAAAGAAATTTTGCTTGGCTTG
AGGCTTGCTGTACGGAAAAATATCATTGGCTCGAGATTTCGTGGAATCCA
TATTGGGTCTTGATTTGGAAAAACCCAGACCCGATCAATCGAACTTGTTG
AACCAATCGAACAGTCGAACTAATCGAACTCCATCGAACGATTAAAGTTC
GATTAAAAAAATTAATCGAACCTAATCGAACACTCACAATTTTTGAAGCA
ATACCGTGAGAGGTCCTAAAGCCGACAGCCCAGCCTAAAACCGATGGGGT
CTTTCAAAGATACAAACTGAAATAAAAACAAACCTTTCGCTGTGACGCAA
CGAAGATACCAAAGTGTCAACTAAACTGAGAGATTTGATACANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTGTTTTGATTTTCCAAAGCACACGAAAATATA
AAAGAGGTCTGTGTACGAGCGTGCTCATTTTGAAACGTTACGTAATCAAG
CCTGGTTTCTATTACTTTACACTTGGCTCGATTGCGGGGCCGCGACTTTG
TGTAAGGATACATATAGACGACGTATATTACATTATATTATATATTACAT
GATAAGAATACAAATAGACAACGTATATTACAATTATTATGTATTACATA
ACACCTTGCTCCTATTCTAGTAAGATAATATATGTCGTCAAACAGTACAC
TTAAATGAGGAGCTATCCGATTGCGGGCCTTCCGTAAATAAACATCCGGA
CTTATAGGTGGTAAAGAGGGCGTTGATAGTTGCCGCCTCATTGATTCAAT
GTTTGTTATTCAAATTAGTGCTACCACATCCGCCCTTTTTTCAACTTCGT
TCCATTTTTACAATTTAGTCTGTTTGTTTCTTGATGGAAACCAGTCCAAG
TTGTTTCGTATTTTTCCCGCACAAGTCACTTTTATTACAAAACTGTTATC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TATTGTTCAACTTGGAGAGGGAATGTTTGTAAACATAGAATTTTTTTTCA
TAACAGTTATTTGGGGGGTCGGAATTAGGCTGGGCTGTCGGCTTTAGGAC
CTCACGGTAGCAGTTCGATTAGTTCGGTCAGTAAAAAGTTCAATTAGTTC
GATGATATTAAATCCTCATATCTTCCCTCGTTTGCAAAAACTTTGTCCTG
GCACGCGATTGCCATTTCGACAGTTCCCGGACTTAACAGCTTGACGTTTA
TTGTACCCGGATATTTGTCTATCCGGAATAAAGTCCGTAGCCCCTCTGTT
GCGATTTTGTGCGCGGCAGAAGTGGCGGAATACTACGCCCCAACAAACCG
CCTCTGGCGCTAATAGGATACATAAAAAGTGTGTAACCCATTATCGGAAG
TAAATTTCCCGACTTATATTCCGAATTTGGCTTTGAAAAGAAGCTAATAT
ACGGTGGCGGAGCAGCACAAACTTGTCGAACAAAATTGGTTTATCGAACT
GATCGAACCAAAACCCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGATCGAACACTCACAATCTTTTAAAAAATCTTAGAGTTCGA
TTAATTTTTTTAATCGAACTTTAATCGTTCGATGGAGTTCGATTAGTTCG
ATTGTTCGATTAGTTCAACAAGTTCGATTGATCGGGTCTGGAAAAACATA
TGTGTCAATGTTCAATCGAAGAAATAAGTTCTCACCAATGTCTAAACTTT
TGACTATATCTAAAGAATTAGGAAACCTTTTTAAGATCCGTAAAAAGCTC
GCTACTTCCAAATAGTTGTAGAATAAACCCTGAGAAAACCAACACAATTG
ATAAGATAATTAATCTTTAAATAAAGATTGAAGATGAAAATTCACAAAGA
GAAAGCAAACCTTAAGTAAAGAAATTGCCTTTTCGACACATTTTTACATG
AAAAATAGAAAAACTTTTGGATATTTGAGTACCCCAAACTTTTTAGAATC
TTTTAGTACACATAGCAAAAGAAAAAGAAACAATTAAAATCTTTAAATCA
GCTGAATTTTATCCATAATCCATATACATTGAAAAAACGTCCTTCCGCCA
TTTTATTTTTCAACAATGTGACAAATAAATTTCCAACATCCAATTAAATG
CCTGTTTTGTATCACGTTGTAGAAAAAAAGTCATGTGACATCAATTTCCG
TAGAATGGCTGTTCCGTTATATTTATAAGGATAAGAATACAAAGATTCAA
CCAGGGGGTTATAATCTTGGGCTTGGCGAGGCTCAGCTTTTAGGGCAATG
TTTTTGTTTTTTTCTGAAGCACATAAGATAGAGGAAGACCTATTTAAGGG
GGAAGTTAGGGGAACAATTCTATCAAAAGTTATTGGCAAAGAAAGTCATT
TTTGAGGTGGAAATTTTATTGTAGTACCCCCGTCTTATCCAGGTTTGACA
ACCAGTAGTCAAGTACATCAGAAACATACTGGAATGTTTCCAGATGGACA
GGATAATTATCCACAAAGCACCAGCAAGAACAAAAGTTGAATTTGGCTGA
AAATGGCTGAAATTTGACTTGACTACGGGTTTTAGGGAAATTAGGTCATT
TAAATACTGCTAAAAAAATTTGAAAATGGAAACTCAATGGCCACCAAATT
AAAAGACAGTCTATTTTGGAGTGATAAAAGCGATAACAGAGTGTCTACAG
GGTATATTGAAACCTTAAATCTGGAGCAACCAACTTTGAAATGTAATAGG
GCTGGATTAGAATTTTCGCAATTTCTTGCTCCCTTCACTCGCAATTATGA
TTTTACTATAATCCTTTAAGTCCTTCGAAAACCTCATTTTAACACTTTAT
ATGTTGAATAGAATACTCAAAAACAACCCCAAACTGTTGAAAACTAAAAA
AATTTCGCAGAAAATTTGCGAAACCTTTGGAATAGTACAAAAAATTTCAG
TTCAACATCTTAGAATATTATAGCCTTTATTTAATAAGTGCAGTGAATGA
AGGGAACACCCTAAAAACATGCAAACTAAAGGGCGCCAAATTTACTTTTT
AGTTAATAAAAATTGACAAGAATAAGATGGAAACAAATAAAGTAAGAAAT
ATGAAAAAGCACTTCCGGTTCTGAGTTATTTTGATTTGAAATTTTTATAT
AAACAATAGAATTACATGGAAACAAGGCCGGGCCAGTCATAAAAATTGAT
AGAAAAAAGCTTTTGAGCTCACATTTTCAGCATGCACTGGAATACAAATA
TATAGTTTTCAATATGGTTTGAAGACCTTCAAAAAATACCAAACAATTCG
GGAAAGTTGTATAGGGATAGACTTGGGAGGCAACTGTGGAAAGTTGGGGT
TGTAGTGCCCCCTATTACAAGTAAAATAATTTTGTAAAAACAGCTTTTTG
GTATTTTTTTCTCTTTTAGCCGGAAAACTGCGAATTCTAAGGTGTAAAAA
AGCAAAATGGCACCAAAATTAGTAACCAGCGGCGCTATGTGTTTTGGTGC
CCTCATCAAAAATCAACTGCGGCTGGGGGAAGAGGGGCGGGTAGTTTCCA
TCTCCTTGTCCCTCCTGTCACTTTGCTACTCTAATGCTTAATTTATCTTT
TGCGTCAACAAAGAAGATTTCTTACTTATTTCCCAAACACATTTTTGCCA
TTTGGTTAACTTAAAACGCCTTAATGCACCTACAAACATTATAAAAGTTA
AGCTATTAGAGAACTTCTTAAAAAAAGTCCTTTGAATAAAGAAACCCATT
CTTTGATTCAAACAAGCTTCTGTTTTACCATTAGATTTCCATGCAAATCC
TGAAATATTGTTCAAAAAAGAGCCTAATCCCGCGATCCCGTTACTTTAGA
TGCCCCCCTACTCTTCTACGAAAAATGAATTTCTTTTTCTTGTTTTGATC
TTACATTGGTTTTTATTTTGAAAAGATTTTTTTTTGTGATTCATCAAGTT
TAAACGATTCCCAAGCATCTTTTATATGTAGATCATAGATTTTATCCTCT
ATTAGCCCTGCTATGGAACATCTGTATGAGAGAACAGTAATTGAAGTGGC
ATTTACAATGGGAGCATTCATTAGCGTTTCAAAAGTGTTTCTTTTTTTCT
AAACTGAGATGTATGCCCATTCTGGCTAAGGCGGTTATTTTCAAACTAAA
GTCTGTCCAGAATTGGCAGTGGAAACAAGAATGCCTGTTACTTTTGATAG
TCAAATATAATTATGAAAATTTTTTTTGCTTCTTTTAGAGAATCAAAAGC
GCTATATTTGAATGTATTTTTGGTTGAAAAATTCGCGATTTTTAGCGGTT
TAATTTGCGATTGTAAAAATTGAGCTTTTTTTCTACTTATGCTATAACGT
TCATTTTTACACCAGTGGTAGTTCAACCTTAGGTCAAGAAGTTTGATAAA
TTTCAAGGTAAACAAAAGAGTCCTTCGGAAGATATGGGACCCGAAATACC
CCTTGGTAGCACTTTTCTGTGAAATATCAAATCTCCAACTTATTACTCAN
GATGAAACAGTTTTTCGATCATAACACATTTTACAATCTCTTTAATGACC
NNNTATGCTTATCCTTTCAATAAAAACAATTAGTACTAGTAATAACATGG
TTTAGAGGGTGATTTGGGATTAATAACCCCGAGGTTCATTGAAAACATTT
CAAAATAGCCAGAACGTAGTGAGGGCTATTTTGAAGTGTTTTCAATGAAA
CGAGGGATTATTAATCCGAAATCACCCGAGAATACCATGTTATTCCTCGT
TAATTATATGGTCAAAAAAAGAATTAAAGAACACTCAACACTCGGTATTC
TTTTCGAAACTTATAAAAACATTCGAGACTATAAAAAAACATCCGACTGA
CACTCTTATTTTGATTGGCTTAAAAATTTCGTACGATATTTTGTTAACCA
ATCAAAATATCGTACGATACTTTTCTTTCAACCAATAGAAATTTTGGTTT
ACATCAGGGCGATTACAAAAAAGCGGGGCTATTACGGATTTATCGCCCCG
CTCGTCCTTTACAAATCTAAGCTAAATGTAATCAACCATATAATTATACT
NNNNNNGCATATGATTTCACTTCGTTTCGAAATAATCAATGATACCAATA
ATACCAACGCACCAACACTTAACACTTTCCAACTTTTAATTGCACTGTTC
AAAAAAGATAACATAACCCCCGCTTTTAGTAATAAGTTGGAGATTTGATA
TTTCACAGAAAAGTGCTACCAAGGGGTGTTTCGGGTCCCATATCTTCTGA
AGGACTTTTCTGTTCGCCTTGAAATTTAACAAACTTCTTGACCTAAGGTT
GAACTACCACTGGTGTAAAAATGAACGTTATAGCATAAGTAGAAAAAAAG
CTCAATTTTTACAATCGCAAATTAAACCGCTAAAAATCGCGAATTTTTCA
ACCAAAAATACATTCAAATATAGCGCTTTTGATTCTCTAAAACAAGAAAA
AAAAATTTTCATAATTATATTTGACTATCAAAAGTTACAGGCATTCTTGT
CTCCACTGCCAATTATATCTGGACAGACTTTAGATTTTCAAGCGTCAAGA
GATTATCGAAGGTTTCTCCAAGAATCTTTGACGTTTTGGTATTGAAAACA
GTTTCTTCTCAGAATCGTCAATGACTATTAATTAACTATTAACTGATATT
TGTCAGCATTGCCAACTATTTGATCTTTAAAAGCCATGTATAGATTTTTT
CTGCTACAAAGCTTAGTTTAGAGAGACTCTGTTAATGGTTTTGTTTTCAA
ATACGAGTGATATCGTTTGCTTACTCATCAGTTTTAATTTACAAGCTTTC
TGATATTGAATAGACCTTTTCATAAGTTACGTCACGAACATCACTTGCCT
CGTATTCAAACAATTACCATGGTGGATTATATCCCTCTAGACTTTAAATG
ATTTTTTTTATGAATAGAAAGTAGTTTTAATAAAATCCGCTGGGAGTTAA
TCACCTTGGCAATAATTTCAAAACGAGGCAAGTGATGTTCGTGACGTAAT
TTTTGAAAAGGCCTATTGAAACGGATGTGGAGCAAGATTGGTCAGAAAGA
TGAAAAGAAAAACATTTTTTTGCTAATATCAACACAATATAAAAATAGGC
AGACACTTTCCTGATATGAAACATATGAAACGGGAACACTCGTGTAAAAA
TAAAACCTTTAAGCAAACTTCGAGTCTATGGTATCTTTAAGTCGATTTTT
CGAAGATTTTGGAGCAACTGGCTCTGCAATGAAATTCATTTTTCAACAAC
ATATATAATTTATCGTTCGTATGGTAACAACTTGTTTATTCACTTTTCTA
GATGACAAAAAGAGCAAGAAAGACGAACGAAAACCATGCGTCAAACCTAA
ACGTGGATATATGCCGCCCATGGAAGATACCGATGACGTTATAGATGATG
ATTCTGACGAATGGGAAGATGTTGAAGATGACGTCATTAGCGGTGGTGAC
GTGGAAACGGATGACGAAGAATCGGAAGCTATCCCACAATCCAACTGTCT
GTTTTGTCCACACGAGAGCATTTCCGTAGAAGATAATATGCGACACATGT
CCAAATCGCATAGTTTCTTTATGCCCGATTTAAACTTTATTACGGATCTG
GAAGGCTTTTTAATCTACCTTGGTGCTAAAGTCGGTGATGGGAAAATCTG
TTTGCTTTGTAATAACCGAAGCAGACAATTCCGTACTATTCAAGCATGTC
AAGAGCATATGGTTGATAAGGGTCACTGCATGCTTGACTATCAAGGAGAT
TCTATGTTGGAGTACGCCGATTTTTATGATTTCTCGAGCAGTTATCCTGA
TCATAACGAAAACATGGATGTGGATAGTGAGTTATCCACCAATGATGGCT
CAATGACTGTCGATCCACACACTCTGGAGTTAGTACTACCAAATGGTGTA
AGAGTCGGCCATCGTGCATTGAGAAGATACTACAATCAAAATACGGTGGC
AGAGATGTTCCAAACAAAGAATCGTGCTATGATTACTGGTGTTAATACGC
AATATAAAGCTCTGGGACTTTCTGGTGCTACGCTAACCGTAGCTATCAGA
AAGAAGATTGTAGCCAGGAAGTTTGAGATTCGTCATCGAGCAGATCAACG
TATGAGAATAGGGATGAAGGGAAATAGTGTTCTTCAAACACATTTCAGGA
AGCAAGTGATGAACTGTGGTTAATTTTTATGCTTGATCATCGTTGGTGTT
GGCTAAGATTAATTTTGTTAACATCCAATTTTCATAACTACACTCCTTTT
GATTTACTATTTTTTTTAAATCATTTATTATACTTAATTTTGTTTGGTAA
TAATCGGCAGGGTGTCTCTTAAATATGTGATATTTTCACTTTGGGGTTTT
TGGTTGATTTAAGTCAGCTATAGCATTAAGTTTATATGCTTTTATTCATG
CACTTTCAGAGATTGCCCTTCTTTAATAAAATAAGTAGATATATCTAGAC
CGTGCCTGCCCCTTTTTTCAATAGTCGGAGGCTATTTTCCATGCGAAATC
TTCTACTTATTCTTGTCTTTCACCGGTATCGGGATGTTTAAAGCAATTAG
AGAGATTGATGGGACGAAGGGGGGGGGTTGTATCTTTTCAACTTCTATCT
ACCATCTAATAATTCTATTTAAGGCTTTTCATGAATTATTTTGAAAGCAA
CGCCTGTCTCGTTTTGAAACCATTACCAAGTAAATTAACTTGAATCAAGT
GTTACTTTTAATAACAGAGCAAAAACCATAGTAATATTTTGAGAACGAGG
TAATTTTCGCTCGTGACGTAATTTATAGACAGATCTATTAAGAATACCTT
ACCTTCATTGACTTGGATTGGAAATGAAGCCACTTATTTCCCATCCAAAA
CTACCGTGGCTGATATGGGCAACCCTACCCTTATCTTAGATGGGCGGACA
ATGTTAGGCGGCCGCCTATCATCTCGGGCGGCCGCCTGACTAGGGTGGGC
GGCCGCCTGTTTCTAGAGGTTGGTCATGAAATTAACATTCTGGTCTGTAT
TTTATTTGATGTTACTTAGGCGGCCGCCTATTTTTGATTTTAACTTAGGC
GGCC

Coding sequence (CDS) from alignment at sc0000276:255689..265142-

>TCONS_00017805 ID=TCONS_00017805|Name=TCONS_00017805|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at sc0000276:255689..265142- (Clytia hemisphaerica)
ATGACAAAAAGAGCAAGAAAGACGAACGAAAACCATGCGTCAAACCTAAA
CGTGGATATATGCCGCCCATGGAAGATACCGATGACGTTATAGATGATGA
TTCTGACGAATGGGAAGATGTTGAAGATGACGTCATTAGCGGTGGTGACG
TGGAAACGGATGACGAAGAATCGGAAGCTATCCCACAATCCAACTGTCTG
TTTTGTCCACACGAGAGCATTTCCGTAGAAGATAATATGCGACACATGTC
CAAATCGCATAGTTTCTTTATGCCCGATTTAAACTTTATTACGGATCTGG
AAGGCTTTTTAATCTACCTTGGTGCTAAAGTCGGTGATGGGAAAATCTGT
TTGCTTTGTAATAACCGAAGCAGACAATTCCGTACTATTCAAGCATGTCA
AGAGCATATGGTTGATAAGGGTCACTGCATGCTTGACTATCAAGGAGATT
CTATGTTGGAGTACGCCGATTTTTATGATTTCTCGAGCAGTTATCCTGAT
CATAACGAAAACATGGATGTGGATAGTGAGTTATCCACCAATGATGGCTC
AATGACTGTCGATCCACACACTCTGGAGTTAGTACTACCAAATGGTGTAA
GAGTCGGCCATCGTGCATTGAGAAGATACTACAATCAAAATACGGTGGCA
GAGATGTTCCAAACAAAGAATCGTGCTATGATTACTGGTGTTAATACGCA
ATATAAAGCTCTGGGACTTTCTGGTGCTACGCTAACCGTAGCTATCAGAA
AGAAGATTGTAGCCAGGAAGTTTGAGATTCGTCATCGAGCAGATCAACGT
ATGAGAATAGGGATGAAGGGAAATAGTGTTCTTCAAACACATTTCAGGAA
GCAAGTGATGAACTGTGGTTAAATGGTAAATTTTACTTGCATTACTTGTC
ATGTTTTATTTCAAAATGCTGACTTTCAACGTGACCATTACAAGACAGAC
TGGCATCGTTACAACTTGAAGAGAAAGATTGTAGAACTTCAGCCAGTAAC
GGAAGATGATTTCGATAAGAAAGTTGCATTTCAAACAAAGAAGAAAGATG
AGAAACTCTCAGGGGGAAGAACAGCAACAGAATGCCAAGCTTGTAATAAA
AAATTTTCATCAGAAAAAGCATATGATAACCATGTGAAGTCAAAGAAACA
TAGAGAGCAAGAAGCCAAACAGGCTAAAAATGGTAGTCAAGAAATAAAAG
ATGACAAAAAGAGCAAGAAAGACGAACGAAAACCATGCGTCAAACCTAAA
CGTGGATATATGCCGCCCATGGAAGATACCGATGACGTTATAGATGATGA
TTCTGACGAATGGGAAGATGTTGAAGATGACGTCATTAGCGGTGGTGACG
TGGAAACGGATGACGAAGAATCGGAAGCTATCCCACAATCCAACTGTCTG
TTTTGTCCACACGAGAGCATTTCCGTAGAAGATAATATGCGACACATGTC
CAAATCGCATAGTTTCTTTATGCCCGATTTAAACTTTATTACGGATCTGG
AAGGCTTTTTAATCTACCTTGGTGCTAAAGTCGGTGATGGGAAAATCTGT
TTGCTTTGTAATAACCGAAGCAGACAATTCCGTACTATTCAAGCATGTCA
AGAGCATATGGTTGATAAGGGTCACTGCATGCTTGACTATCAAGGAGATT
CTATGTTGGAGTACGCCGATTTTTATGATTTCTCGAGCAGTTATCCTGAT
CATAACGAAAACATGGATGTGGATAGTGAGTTATCCACCAATGATGGCTC
AATGACTGTCGATCCACACACTCTGGAGTTAGTACTACCAAATGGTGTAA
GAGTCGGCCATCGTGCATTGAGAAGATACTACAATCAAAATACGGTGGCA
GAGATGTTCCAAACAAAGAATCGTGCTATGATTACTGGTGTTAATACGCA
ATATAAAGCTCTGGGACTTTCTGGTGCTACGCTAACCGTAGCTATCAGAA
AGAAGATTGTAGCCAGGAAGTTTGAGATTCGTCATCGAGCAGATCAACGT
ATGAGAATAGGGATGAAGGGAAATAGTGTTCTTCAAACACATTTCAGGAA
GCAAGTGATGAACTGTGGTTAAATGGTAAATTTTACTTGCATTACTTGTC
ATGTTTTATTTCAAAATGCTGACTTTCAACGTGACCATTACAAGACAGAC
TGGCATCGTTACAACTTGAAGAGAAAGATTGTAGAACTTCAGCCAGTAAC
GGAAGATGATTTCGATAAGAAAGTTGCATTTCAAACAAAGAAGAAAGATG
AGAAACTCTCAGGGGGAAGAACAGCAACAGAATGCCAAGCTTGTAATAAA
AAATTTTCATCAGAAAAAGCATATGATAACCATGTGAAGTCAAAGAAACA
TAGAGAGCAAGAAGCCAAACAGGCTAAAAATGGTAGTCAAGAAATAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009980XLOC_009980Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017805-proteinTCONS_00017805-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017805-exon-sc0000276-1575043694:264645..265142TCONS_00017805-exon-sc0000276-1575043694:264645..265142Clytia hemisphaericaexon
TCONS_00017805-exon-sc0000276-1575043694:255689..257441TCONS_00017805-exon-sc0000276-1575043694:255689..257441Clytia hemisphaericaexon
TCONS_00017805-exon-sc0000276-1510915933:264645..265142TCONS_00017805-exon-sc0000276-1510915933:264645..265142Clytia hemisphaericaexon
TCONS_00017805-exon-sc0000276-1510915933:255689..257441TCONS_00017805-exon-sc0000276-1510915933:255689..257441Clytia hemisphaericaexon
TCONS_00017805-exon-sc0000276-1491911889:264645..265142TCONS_00017805-exon-sc0000276-1491911889:264645..265142Clytia hemisphaericaexon
TCONS_00017805-exon-sc0000276-1491911889:255689..257441TCONS_00017805-exon-sc0000276-1491911889:255689..257441Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:255689..265142 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
127.525	120.24	87.5	85.1624	74.0617	58.0617	75.8789	86.9925	82.2225	89.4778	94.1366	69.7963	100.089	109.859	60.3081	54.5349	42.4798	44.8104	66.6545	75.0639	71.4259	69.0472	89.6033	83.672	78.0471	83.7893	84.3342	100.047	77.7137	81.516
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013087Znf_C2H2_type
IPR022755Znf_C2H2_jaz
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00017805 vs. Swiss-Prot (Human)
Match: ZN622 (Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.447e-61
Identity = 104/230 (45.22%), Postives = 149/230 (64.78%), Query Frame = 3 
Query:  675 AIPQSNCLFCPHESISVEDNMRHMSKSHSFFMPDLNFITDLEGFLIYLGAKVGDGKICLLCNNRSRQFRTIQACQEHMVDKGHCMLDYQGDSMLEYADFYDFSSSYPDHNENMDVD-SELSTNDGSMTVDPHTLELVLPNGVRVGHRALRRYYNQ--NTVAEMFQTKNRAMITGVNTQYKALGLSGATLTVAIRKKIVARKFEIRHRADQRMRIGMKGNSVLQTHFRKQV 1355
            AIP ++CLFC H S S+  N+ HM+K HSFF+PD+ +++D++G + YLG KVG GKICL CN + + F + +A Q HM DK HC L   GD+ LE+ADFYDF SSYPDH E  D + +E   ++ ++  D  T+EL+LP+G RVGHR+L RYY Q       +   KNR  +  V  QY+ALG +G+T    +R++ +  ++  R ++   ++ GMK N+  Q HFR QV
Sbjct:  248 AIPITDCLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDHKEGEDPNKAEELPSEKNLEYDDETMELILPSGARVGHRSLMRYYKQRFGLSRAVAVAKNRKAVGRVLQQYRALGWTGSTGAALMRERDM--QYVQRMKSKWMLKTGMKNNATKQMHFRVQV 475

HSP 2 Score: 112.849 bits (281), Expect = 3.045e-26
Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 3 
Query:  171 MVNFTCITCHVLFQNADFQRDHYKTDWHRYNLKRKIVELQPVTEDDFDKKVAFQTKKKDEKLSGGRTATECQACNKKFSSEKAYDNHVKSKKHREQEAK--QAKNGSQEI 494
            M  +TCITC V F++AD QR HYKTDWHRYNL+RK+  + PVT + F ++V  Q    +E+  G  +AT C  C+KKF+S  AY+NH+KS++H E E K  QA N   E+
Sbjct:    1 MATYTCITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEEESKG--SATYCTVCSKKFASFNAYENHLKSRRHVELEKKAVQAVNRKVEM 108
The following BLAST results are available for this feature:
BLAST of TCONS_00017805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN6223.447e-6145.22Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 ... [more]
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