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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017818 ID=TCONS_00017818|Name=TCONS_00017818|organism=Clytia hemisphaerica|type=transcript|length=1114bp
TGCAATTTTTCCGTTTCCCAAATGTCTTTCATCATTGATACATCACcatc
catatcttttaaatagccTTTGATGGTTATACGACCTTTACGATTCTTTC
TCAGTGAATTTGCATATTTTTCTGGAGCCTCAATCACCAAGCCGATAATA
TGCTCTTTCCCTTTAACACGCCTTTGCGATTTGGCTATGAATAAATAAGT
CGGAGTGAAAAATACTTTGGAAAGGATGGAAGATGTCTTCGTCGTGAACA
TATCCTTTAAGTCAGGTTTTTTGCGGATGAAAAGAGAAAGTTTTGGCGAT
ACAATGGGAATTGACCACCATGTAGCGATTCTCCAGGATGAAACGTAGGA
CTCGTCATGTGAGCAGAAATTCATGTAGTAAGCTTTATGCATCATTTCAT
GATGAGTAGTATCCAGTTGAAACATAATTCCCAAATTATCATTTTCTAAA
TAGAGAGATGAGCACCTCCACATCATTTGCGTTGAGGAGATCACCACAAA
CAATATAACCAATGATCCAATTAAAGGGATAAGTTTGATTATAAAACGAC
ATAAATAAATGAATGCATAAGTCATTCTTAAAAGaatttcctttgaaaga
taACTTAAGATGAACCCACCGAGGATGAGAGCAAGTAAACTTTTGACCCA
AACTTCATCAGAAGATGCCTCTCTTCCTTTTACACCCCAAGCTTTAAAAG
AAACAGGTCGAACCAAACGCCCATAATATTCCGTAGTTTCAAAACGTCCA
GTGAAGACAATTTCTGAATGTTTTTTGCTATGTAATAATCTAGAAGCTTT
CCAGTCTTTCACTTCGATTAATAAATCGATATTGTCTGCATTTTTTCTTC
CCATTTTTCGTTTCGAAGATGCCGCAAAATATGTTGATGAAATTTGCTTA
ACCGATTTAAGATCTTTAACTTTAACAACAAGTTGAATCTGTACTGGTTT
TCCGGAAAGATGATATGGAACCGGATATTTATAACACGGATTCTCAACAT
ACGCGCGTTCGTGAAAACTGTTAGGATCATCAGTTTTCAACTTGAACATT
TCTCCCAAATCTTCATTCTTCAAAAGCACTGGTGAacagtgatatgattg
ataagtaGCCAGAA Run BLAST on NCBI protein sequence of TCONS_00017818-protein >TCONS_00017818-protein ID=TCONS_00017818-protein|Name=TCONS_00017818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
LATYQSYHCSPVLLKNEDLGEMFKLKTDDPNSFHERAYVENPCYKYPVPY
HLSGKPVQIQLVVKVKDLKSVKQISSTYFAASSKRKMGRKNADNIDLLIE
VKDWKASRLLHSKKHSEIVFTGRFETTEYYGRLVRPVSFKAWGVKGREAS
SDEVWVKSLLALILGGFILSYLSKEILLRMTYAFIYLCRFIIKLIPLIGS
LVILFVVISSTQMMWRCSSLYLENDNLGIMFQLDTTHHEMMHKAYYMNFC
SHDESYVSSWRIATWWSIPIVSPKLSLFIRKKPDLKDMFTTKTSSILSKV
FFTPTYLFIAKSQRRVKGKEHIIGLVIEAPEKYANSLRKNRKGRITIKGY
LKDMDGDVSMMKDIWETEKL Run BLAST on NCBI transcript from alignment at sc0000276:178271..179384 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017818 ID=TCONS_00017818|Name=TCONS_00017818|organism=Clytia hemisphaerica|type=transcript|length=1114bp|location=Sequence derived from alignment at sc0000276:178271..179384 (Clytia hemisphaerica)
TTCTGGCtacttatcaatcatatcactgtTCACCAGTGCTTTTGAAGAAT
GAAGATTTGGGAGAAATGTTCAAGTTGAAAACTGATGATCCTAACAGTTT
TCACGAACGCGCGTATGTTGAGAATCCGTGTTATAAATATCCGGTTCCAT
ATCATCTTTCCGGAAAACCAGTACAGATTCAACTTGTTGTTAAAGTTAAA
GATCTTAAATCGGTTAAGCAAATTTCATCAACATATTTTGCGGCATCTTC
GAAACGAAAAATGGGAAGAAAAAATGCAGACAATATCGATTTATTAATCG
AAGTGAAAGACTGGAAAGCTTCTAGATTATTACATAGCAAAAAACATTCA
GAAATTGTCTTCACTGGACGTTTTGAAACTACGGAATATTATGGGCGTTT
GGTTCGACCTGTTTCTTTTAAAGCTTGGGGTGTAAAAGGAAGAGAGGCAT
CTTCTGATGAAGTTTGGGTCAAAAGTTTACTTGCTCTCATCCTCGGTGGG
TTCATCTTAAGTtatctttcaaaggaaattCTTTTAAGAATGACTTATGC
ATTCATTTATTTATGTCGTTTTATAATCAAACTTATCCCTTTAATTGGAT
CATTGGTTATATTGTTTGTGGTGATCTCCTCAACGCAAATGATGTGGAGG
TGCTCATCTCTCTATTTAGAAAATGATAATTTGGGAATTATGTTTCAACT
GGATACTACTCATCATGAAATGATGCATAAAGCTTACTACATGAATTTCT
GCTCACATGACGAGTCCTACGTTTCATCCTGGAGAATCGCTACATGGTGG
TCAATTCCCATTGTATCGCCAAAACTTTCTCTTTTCATCCGCAAAAAACC
TGACTTAAAGGATATGTTCACGACGAAGACATCTTCCATCCTTTCCAAAG
TATTTTTCACTCCGACTTATTTATTCATAGCCAAATCGCAAAGGCGTGTT
AAAGGGAAAGAGCATATTATCGGCTTGGTGATTGAGGCTCCAGAAAAATA
TGCAAATTCACTGAGAAAGAATCGTAAAGGTCGTATAACCATCAAAggct
atttaaaagatatggatgGTGATGTATCAATGATGAAAGACATTTGGGAA
ACGGAAAAATTGCA Coding sequence (CDS) from alignment at sc0000276:178271..179384 >TCONS_00017818 ID=TCONS_00017818|Name=TCONS_00017818|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at sc0000276:178271..179384 (Clytia hemisphaerica)
CTGGCtacttatcaatcatatcactgtTCACCAGTGCTTTTGAAGAATGA
AGATTTGGGAGAAATGTTCAAGTTGAAAACTGATGATCCTAACAGTTTTC
ACGAACGCGCGTATGTTGAGAATCCGTGTTATAAATATCCGGTTCCATAT
CATCTTTCCGGAAAACCAGTACAGATTCAACTTGTTGTTAAAGTTAAAGA
TCTTAAATCGGTTAAGCAAATTTCATCAACATATTTTGCGGCATCTTCGA
AACGAAAAATGGGAAGAAAAAATGCAGACAATATCGATTTATTAATCGAA
GTGAAAGACTGGAAAGCTTCTAGATTATTACATAGCAAAAAACATTCAGA
AATTGTCTTCACTGGACGTTTTGAAACTACGGAATATTATGGGCGTTTGG
TTCGACCTGTTTCTTTTAAAGCTTGGGGTGTAAAAGGAAGAGAGGCATCT
TCTGATGAAGTTTGGGTCAAAAGTTTACTTGCTCTCATCCTCGGTGGGTT
CATCTTAAGTtatctttcaaaggaaattCTTTTAAGAATGACTTATGCAT
TCATTTATTTATGTCGTTTTATAATCAAACTTATCCCTTTAATTGGATCA
TTGGTTATATTGTTTGTGGTGATCTCCTCAACGCAAATGATGTGGAGGTG
CTCATCTCTCTATTTAGAAAATGATAATTTGGGAATTATGTTTCAACTGG
ATACTACTCATCATGAAATGATGCATAAAGCTTACTACATGAATTTCTGC
TCACATGACGAGTCCTACGTTTCATCCTGGAGAATCGCTACATGGTGGTC
AATTCCCATTGTATCGCCAAAACTTTCTCTTTTCATCCGCAAAAAACCTG
ACTTAAAGGATATGTTCACGACGAAGACATCTTCCATCCTTTCCAAAGTA
TTTTTCACTCCGACTTATTTATTCATAGCCAAATCGCAAAGGCGTGTTAA
AGGGAAAGAGCATATTATCGGCTTGGTGATTGAGGCTCCAGAAAAATATG
CAAATTCACTGAGAAAGAATCGTAAAGGTCGTATAACCATCAAAggctat
ttaaaagatatggatgGTGATGTATCAATGATGAAAGACATTTGGGAAAC
GGAAAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017818-exon-sc0000276-1491911889:178271..179384 | TCONS_00017818-exon-sc0000276-1491911889:178271..179384 | Clytia hemisphaerica | exon |
| TCONS_00017818-exon-sc0000276-1510915933:178271..179384 | TCONS_00017818-exon-sc0000276-1510915933:178271..179384 | Clytia hemisphaerica | exon |
| TCONS_00017818-exon-sc0000276-1575043694:178271..179384 | TCONS_00017818-exon-sc0000276-1575043694:178271..179384 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000276 | supercontig | sc0000276:178271..179384 . |
Blast
The following BLAST results are available for this feature:
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