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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017658 ID=TCONS_00017658|Name=TCONS_00017658|organism=Clytia hemisphaerica|type=transcript|length=1504bp
CAAGTAAACATAATATGCAAATATACAAAATACGAAaccatttaaaaagt
ttttgaaagaagttttggttggtaaaaaataaacaagtcgaatctcgaaa
aaatcaaacaagAAGGAGATCGTGTTATGTTGGTACATTGATAGCTTTTT
AGAGGAGAGGACGAAATGTTATAACATGGATTTGTTTCAAGAAGAAAAAT
ACATGAGTGATTTGAACAGGACGAAGTTGTAGACGCTGATTCAAGGACAA
ACAACTGGAAAGTTTTCTACACGCGACCTGACACTGAAAAATTGGCACAT
ACAACATTAAAATTTCAAACGATCGGAAAAAGGAAATTAAAAAGATGTCA
AATCATGTCAGCAGAGATATCAATCAAACCGAACCCTCCTTGATACGATA
TAGACGAATCATAATGGCTTTACCTTTGGTTACAGTTTCAATATCAGTTA
TAACTGTTATAGTTGCCTACATCGTAGCGACTTACGAACGAGAAGTTGAA
AATCCTGGTCGGAACTGCACGCTACATACGAACTTCCCACCTTACATATC
TGATGTTGGCGACTGTAAACCACAAagcagttattttacattcggTATGA
TTCTAAGTGGATGTGTCAGTTTGTTGATTTTCATCATCCGGTATCTACAA
GTCCGCAATTTCTACGTCGATCGAGATTGTGCAAACCTTGCCTCGATTAT
CACAGCATTTATACTAATTACTGGTAAATTTATGGCAATTTCATTCCAAC
TATCGAGTCATAAACCGATTCATTTTTTCGGGGCGACCGGATACTTTTTC
GGAACATTTGTTTACTGTTGTCTTCAAGCCCGCATATCTTATAAAGACCA
CAATGGACTTTTTATCTTTCGTCTTATATGCAGTTTTGGACTTTTTATCA
CTGGTTTTCTCTTTGCTGTTTTCATTATACCATCTGTAGAAATGCGATAT
TTAGAGTACAATGTTGCGCAGGTTTCCGAATGGACTTTTGCTATTCTTAA
GATGCTTTTCATGTTAACTTTTTggattgattttcgtgatattGTTCCTG
TCCTTGATGCTAAACACGTGAAAGAAAAATCGTACGAGAGCCTGGACCCT
CGTTCCTATGACAACGTCAGTATTGATGAAACCTTAAACTTGAACTCAAA
ACCAATGGTTTACAACAGTACTGCAGTCTGATTACAAAAACATACTTGAC
ATTTTATCTACTTTTTCTTTATGACATATCATAGTTGCGGTTATCTTATA
CAGATACAGTTATTTGCAACAAAATAATAATGCCGTTACCTGCCCCAACT
TGGGAAAAGCCTCCTTgagttatgaaattttccttcaGTGTGTGTGTTTT
GTAGTTTATTTCCTTTATTTGACAACTTTCCAAGTGGGGGTATTGACGAA
TTGACACATTTGACTAGATTTCcagatttcaattttgacttttttttctg
attttctatGTTTATGATTTATATCTgtatgtaaaatattttattaaaaa
aaag Run BLAST on NCBI protein sequence of TCONS_00017658-protein >TCONS_00017658-protein ID=TCONS_00017658-protein|Name=TCONS_00017658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MSNHVSRDINQTEPSLIRYRRIIMALPLVTVSISVITVIVAYIVATYERE
VENPGRNCTLHTNFPPYISDVGDCKPQSSYFTFGMILSGCVSLLIFIIRY
LQVRNFYVDRDCANLASIITAFILITGKFMAISFQLSSHKPIHFFGATGY
FFGTFVYCCLQARISYKDHNGLFIFRLICSFGLFITGFLFAVFIIPSVEM
RYLEYNVAQVSEWTFAILKMLFMLTFWIDFRDIVPVLDAKHVKEKSYESL
DPRSYDNVSIDETLNLNSKPMVYNSTAV Run BLAST on NCBI transcript from alignment at sc0000271:339395..340898 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017658 ID=TCONS_00017658|Name=TCONS_00017658|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at sc0000271:339395..340898 (Clytia hemisphaerica)
cttttttttaataaaatattttacatacAGATATAAATCATAAACataga
aaatcagaaaaaaaagtcaaaattgaaatctgGAAATCTAGTCAAATGTG
TCAATTCGTCAATACCCCCACTTGGAAAGTTGTCAAATAAAGGAAATAAA
CTACAAAACACACACACtgaaggaaaatttcataactcAAGGAGGCTTTT
CCCAAGTTGGGGCAGGTAACGGCATTATTATTTTGTTGCAAATAACTGTA
TCTGTATAAGATAACCGCAACTATGATATGTCATAAAGAAAAAGTAGATA
AAATGTCAAGTATGTTTTTGTAATCAGACTGCAGTACTGTTGTAAACCAT
TGGTTTTGAGTTCAAGTTTAAGGTTTCATCAATACTGACGTTGTCATAGG
AACGAGGGTCCAGGCTCTCGTACGATTTTTCTTTCACGTGTTTAGCATCA
AGGACAGGAACaatatcacgaaaatcaatccAAAAAGTTAACATGAAAAG
CATCTTAAGAATAGCAAAAGTCCATTCGGAAACCTGCGCAACATTGTACT
CTAAATATCGCATTTCTACAGATGGTATAATGAAAACAGCAAAGAGAAAA
CCAGTGATAAAAAGTCCAAAACTGCATATAAGACGAAAGATAAAAAGTCC
ATTGTGGTCTTTATAAGATATGCGGGCTTGAAGACAACAGTAAACAAATG
TTCCGAAAAAGTATCCGGTCGCCCCGAAAAAATGAATCGGTTTATGACTC
GATAGTTGGAATGAAATTGCCATAAATTTACCAGTAATTAGTATAAATGC
TGTGATAATCGAGGCAAGGTTTGCACAATCTCGATCGACGTAGAAATTGC
GGACTTGTAGATACCGGATGATGAAAATCAACAAACTGACACATCCACTT
AGAATCATAccgaatgtaaaataactgctTTGTGGTTTACAGTCGCCAAC
ATCAGATATGTAAGGTGGGAAGTTCGTATGTAGCGTGCAGTTCCGACCAG
GATTTTCAACTTCTCGTTCGTAAGTCGCTACGATGTAGGCAACTATAACA
GTTATAACTGATATTGAAACTGTAACCAAAGGTAAAGCCATTATGATTCG
TCTATATCGTATCAAGGAGGGTTCGGTTTGATTGATATCTCTGCTGACAT
GATTTGACATCTTTTTAATTTCCTTTTTCCGATCGTTTGAAATTTTAATG
TTGTATGTGCCAATTTTTCAGTGTCAGGTCGCGTGTAGAAAACTTTCCAG
TTGTTTGTCCTTGAATCAGCGTCTACAACTTCGTCCTGTTCAAATCACTC
ATGTATTTTTCTTCTTGAAACAAATCCATGTTATAACATTTCGTCCTCTC
CTCTAAAAAGCTATCAATGTACCAACATAACACGATCTCCTTcttgtttg
attttttcgagattcgacttgtttattttttaccaaccaaaacttctttc
aaaaactttttaaatggtTTCGTATTTTGTATATTTGCATATTATGTTTA
CTTG Coding sequence (CDS) from alignment at sc0000271:339395..340898 >TCONS_00017658 ID=TCONS_00017658|Name=TCONS_00017658|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at sc0000271:339395..340898 (Clytia hemisphaerica)
TCAGACTGCAGTACTGTTGTAAACCATTGGTTTTGAGTTCAAGTTTAAGG
TTTCATCAATACTGACGTTGTCATAGGAACGAGGGTCCAGGCTCTCGTAC
GATTTTTCTTTCACGTGTTTAGCATCAAGGACAGGAACaatatcacgaaa
atcaatccAAAAAGTTAACATGAAAAGCATCTTAAGAATAGCAAAAGTCC
ATTCGGAAACCTGCGCAACATTGTACTCTAAATATCGCATTTCTACAGAT
GGTATAATGAAAACAGCAAAGAGAAAACCAGTGATAAAAAGTCCAAAACT
GCATATAAGACGAAAGATAAAAAGTCCATTGTGGTCTTTATAAGATATGC
GGGCTTGAAGACAACAGTAAACAAATGTTCCGAAAAAGTATCCGGTCGCC
CCGAAAAAATGAATCGGTTTATGACTCGATAGTTGGAATGAAATTGCCAT
AAATTTACCAGTAATTAGTATAAATGCTGTGATAATCGAGGCAAGGTTTG
CACAATCTCGATCGACGTAGAAATTGCGGACTTGTAGATACCGGATGATG
AAAATCAACAAACTGACACATCCACTTAGAATCATAccgaatgtaaaata
actgctTTGTGGTTTACAGTCGCCAACATCAGATATGTAAGGTGGGAAGT
TCGTATGTAGCGTGCAGTTCCGACCAGGATTTTCAACTTCTCGTTCGTAA
GTCGCTACGATGTAGGCAACTATAACAGTTATAACTGATATTGAAACTGT
AACCAAAGGTAAAGCCATTATGATTCGTCTATATCGTATCAAGGAGGGTT
CGGTTTGATTGATATCTCTGCTGACATGATTTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017658-exon-sc0000271-1491911889:339395..340898 | TCONS_00017658-exon-sc0000271-1491911889:339395..340898 | Clytia hemisphaerica | exon |
| TCONS_00017658-exon-sc0000271-1510915933:339395..340898 | TCONS_00017658-exon-sc0000271-1510915933:339395..340898 | Clytia hemisphaerica | exon |
| TCONS_00017658-exon-sc0000271-1575043694:339395..340898 | TCONS_00017658-exon-sc0000271-1575043694:339395..340898 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:339395..340898 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019402 | Frag1/DRAM/Sfk1 |
Blast
The following BLAST results are available for this feature:
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