TCONS_00017652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017652
Unique NameTCONS_00017652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017652 ID=TCONS_00017652|Name=TCONS_00017652|organism=Clytia hemisphaerica|type=transcript|length=288bp
AGGACCACAAGAACCACCAGAGTTTAAATTTTCGaccaaacaaaaaaaga
agataaacaaatgatacAAATAAATATCGATATTTGTAATGAATCAAAAA
TGTCACGAAAGAAAAATGGGACAGAAAACACGGGCAATAATGTTGTTCTT
CATGAAGAGTGTCATACAACAAAGTATATAGTTCTACAAAATATCTCATA
AATATAATTATAATTTCAACAGACTAACAAAATGTTCCCGACAAAATCTC
TTCAAAGAAAACACCATTTAGGAAAAATTAACAATATA
Run BLAST on NCBI

transcript from alignment at sc0000271:247726..248013

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017652 ID=TCONS_00017652|Name=TCONS_00017652|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at sc0000271:247726..248013 (Clytia hemisphaerica)
TATATTGTTAATTTTTCCTAAATGGTGTTTTCTTTGAAGAGATTTTGTCG
GGAACATTTTGTTAGTCTGTTGAAATTATAATTATATTTATGAGATATTT
TGTAGAACTATATACTTTGTTGTATGACACTCTTCATGAAGAACAACATT
ATTGCCCGTGTTTTCTGTCCCATTTTTCTTTCGTGACATTTTTGATTCAT
TACAAATATCGATATTTATTTgtatcatttgtttatcttctttttttgtt
tggtCGAAAATTTAAACTCTGGTGGTTCTTGTGGTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009869XLOC_009869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017652-exon-sc0000271-1491911889:247726..248013TCONS_00017652-exon-sc0000271-1491911889:247726..248013Clytia hemisphaericaexon
TCONS_00017652-exon-sc0000271-1510915933:247726..248013TCONS_00017652-exon-sc0000271-1510915933:247726..248013Clytia hemisphaericaexon
TCONS_00017652-exon-sc0000271-1575043694:247726..248013TCONS_00017652-exon-sc0000271-1575043694:247726..248013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:247726..248013 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.70304	5.66498	0.505968	0	0	0	0.574521	0	0	0.46644	0	0.297612	0.297199	0.617287	0.253747	0.544619	0.335463	0.687678	0	0.497087	4.32058	5.05783	1.53711	4.19238	0	0	3.67648	0.653939	3.96792	2.02134
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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