TCONS_00017528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017528
Unique NameTCONS_00017528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1736

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017528 ID=TCONS_00017528|Name=TCONS_00017528|organism=Clytia hemisphaerica|type=transcript|length=1736bp
TAAATGTtaacaatatttcaaaacattttaacCAAACATCGGTGTCTGAA
AAACAGATGTTGATGGTATAAAAAGGAATTCTGtagtttttttctcttta
ttaagaagaatctgaactgGTGAATCTTCGAGAAACGgacaaaccaaaga
aaaatgaagaccattttcattttgttaacTTTCCTGGTCATTCAAATATC
AACTGAAGAAATTCACCATCTCCGAGGGCGCCGCTCATCAACGTGTGCTA
GCAGACCGTACAACCCAAACTACAGAATTTGTTGTCAAGGTAACATACTA
ACATTGCCATCTGGTAAGGCATCGACATCCTCATGTTGTGGAGCCAAATC
GTACGCTATTAATTACCGTATTTGCTGTGCTGGCCGTATCTTGGGTTTGC
CCTCGCAAAATGCGTCTTCAAGTTCGTGTTGTGGAACAAAGGCTTACAAT
TTGAACTATCATAAATGTTGTAGAGGAAAAATTATTCCAAGAAGACAATC
TTGTTGAGAAATATGTAttctttaagggctctgatcaaagtgaatttttc
atattttttaaatgtgttTTTTGACTAaggtaaccaacaaaactatgata
TGTCATACATTTATTGTTAGGCAAActattcttgaatctgaaaattgcat
cgcaaagatttgatgaagaagaaaatcaagacTTAACTTTTGTGAATTTT
CCGTCAAAGTTTCTTCCCCTAAAGAACGGATTTTGTTcatcattttgcaa
aatttgatatATTTCGTAAGAAGATGcgtgacaaattaaaaaaattgttt
tactgtataaaattttcaaatgcaaGTGCAAAATTAAGCGTTGAAATTAC
CTATATTGATCCCATTCAGTGTTAATTTGGTGCAAGCCATAAAAATTCCC
TTGTTCAAGACCATTTTACATCGTTGAACGGTTAAATAAACCTATTGGTC
GCGTGACTGACCGTATTGATCAGTTATCTGGTCGAATTGATCATATTGGT
CGCGTGACTGACCGTATTGATCAGTTACCTGGTCGAATTGATCATATTGG
TCAAGCGACTGACCGTATTGATCGTTTGGCTGACCGTTTTGATCGAGGGG
ATGCCCGTATTGATCACGTGACTGACCGTATTGATCACGTGGCTGACCGT
ATTGATCGTGTGGCTGACCGTTTTGATCACGTATCTGCTCATCAACATTC
AAGCGAACCGTTTCATCATCAGCACGATAGACAAAAGTTGTACCTTCATA
CACATTCCTTCTTTTTCGACATAAGCAGAGGTTCAACAAGAAAGCTAAGA
AAGAGAGAAGAGGGATGCCAAGAAAACCAAGGAATCTCAGCTTTATCCGC
GGAATTTTTGGAGTCTTTATTCTCAACTTTGGAATCTTTGGTAATGGTTT
GAtttcaaatctttcaaatctttCAAATGGTTTTGGTGTTCTTGCGAGCC
ATTCAAAATCTTTCCACACCATTGTTGGTCTATTGGTTATCggtttgttt
tttgatttaaaacGAGTCTTCCACGAATTCCAGTAATCGTTTTTTAACTC
TTTTGAACTTCTTGCATCAGATGGTGATCTTGCGCTTAATCCAGTAAAAA
CATTGATTGTAACAAGTGTTACAAATAGACCTTTATCTATTCCCAACATG
TTAATGTGCATCACGATTGAGTAATAAGTGAAATGATTCTAAACAATCTT
TTCGTGCTTTATtcactaaaaaaatattttttttcg
Run BLAST on NCBI

transcript from alignment at sc0000269:362425..364756+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017528 ID=TCONS_00017528|Name=TCONS_00017528|organism=Clytia hemisphaerica|type=transcript|length=2332bp|location=Sequence derived from alignment at sc0000269:362425..364756+ (Clytia hemisphaerica)
TAAATGTtaacaatatttcaaaacattttaacCAAACATCGGTGTCTGAA
AAACAGATGTTGATGGTATAAAAAGGAATTCTGtagtttttttctcttta
ttaagaagaatctgaactgGTGAATCTTCGAGAAACGgacaaaccaaaga
aaaatgaagaccattttcattttgttaacTTTCCTGGTCATTCAAATATC
AACTGAAGGTATGTAAGGGAAAGGGAAGGGAAAGAAACAGATTGTTCAAA
ATTACGAGGTTTCCTAGGAGCTGTTTGGTGATATCATTTAGAGCTTACAG
ACCATACTTTACCAATGCCTCTCCGAGTAAAGACTGGTCTTAACTCATAA
AGTGTCATCAATCCgtaacttcaattttcgaatatttttttatttgaatt
tcgCGCACACGCCTGCATGTTCGATGCCGGTGGCACTTAATAggttaatg
aatttttttcttttcggcCGCTGGAGTTTCAATCTTACTTGCTAAACTTT
TTATTTCCTTACACAGAAATTCACCATCTCCGAGGGCGCCGCTCATCAAC
GTGTGCTAGCAGACCGTACAACCCAAACTACAGAATTTGTTGTCAAGGTA
ACATACTAACATTGCCATCTGGTAAGGCATCGACATCCTCATGTTGTGGA
GCCAAATCGTACGCTATTAATTACCGTATTTGCTGTGCTGGCCGTATCTT
GGGTTTGCCCTCGCAAAATGCGTCTTCAAGTTCGTGTTGTGGAACAAAGG
CTTACAATTTGAACTATCATAAATGTTGTAGAGGAAAAATTATTCCAAGA
AGACAATCTTGTTGAGAAATATGTAttctttaagggctctgatcaaagtg
aatttttcatattttttaaatgtgttTTTTGACTAaggtaaccaacaaaa
ctatgataTGTCATACATTTATTGTTAGGCAAActattcttgaatctgaa
aattgcatcgcaaagatttgatgaagaagaaaatcaagacTTAACTTTTG
TGAATTTTCCGTCAAAGTTTCTTCCCCTAAAGAACGGATTTTGTTcatca
ttttgcaaaatttgatatATTTCGTAAGAAGATGcgtgacaaattaaaaa
aattgttttactgtataaaattttcaaatgcaaGTGCAAAATTAAGCGTT
GAAATTACCTATATTGATCCCATTCAGTGTTAATTTGGTGCAAGCCATAA
AAATTCCCTTGTTCAAGACCATTTTACATCGTTGAACGGTTAAATAAACC
TATTGGTCGCGTGACTGACCGTATTGATCAGTTATCTGGTCGAATTGATC
ATATTGGTCGCGTGACTGACCGTATTGATCAGTTACCTGGTCGAATTGAT
CATATTGGTCGCGTGACTGACCGTATTGATCGTGTGGCTGACCGTTTTGA
TCGAGGGGATGCCCGTATTGATCAGTTGCCTGGTCGAATTGATCATATTG
GTCAAGCGACTGACCGTATTGATCGTGTGGTTGACCGTTTTGATCGAGGG
GATGCCCGTATTGATCAGTTGCCTGGTCGAATTGATCATATTGGTCAAGC
GACTGACCGTATTGATCAGTTGCCTGGTCGAATTGATCATATTGGTCAAG
CGACTGACCGTATTGATCAGTTGCCTGGTCGAATTGAACATATTGGTCAA
GCGACTGACCGTATTGATCGTTTGGCTGACCGTTTTGATCGAGGGGATGC
CCGTATTGATCACGTGACTGACCGTATTGATCACGTGGCTGACCGTATTG
ATCGTGTGGCTGACCGTTTTGATCACGTATCTGCTCATCAACATTCAAGC
GAACCGTTTCATCATCAGCACGATAGACAAAAGTTGTACCTTCATACACA
TTCCTTCTTTTTCGACATAAGCAGAGGTTCAACAAGAAAGCTAAGAAAGA
GAGAAGAGGGATGCCAAGAAAACCAAGGAATCTCAGCTTTATCCGCGGAA
TTTTTGGAGTCTTTATTCTCAACTTTGGAATCTTTGGTAATGGTTTGAtt
tcaaatctttcaaatctttCAAATGGTTTTGGTGTTCTTGCGAGCCATTC
AAAATCTTTCCACACCATTGTTGGTCTATTGGTTATCggtttgttttttg
atttaaaacGAGTCTTCCACGAATTCCAGTAATCGTTTTTTAACTCTTTT
GAACTTCTTGCATCAGATGGTGATCTTGCGCTTAATCCAGTAAAAACATT
GATTGTAACAAGTGTTACAAATAGACCTTTATCTATTCCCAACATGTTAA
TGTGCATCACGATTGAGTAATAAGTGAAATGATTCTAAACAATCTTTTCG
TGCTTTATtcactaaaaaaatattttttttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009799XLOC_009799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017528-exon-sc0000269-1491911889:362425..362632TCONS_00017528-exon-sc0000269-1491911889:362425..362632Clytia hemisphaericaexon
TCONS_00017528-exon-sc0000269-1510915933:362425..362632TCONS_00017528-exon-sc0000269-1510915933:362425..362632Clytia hemisphaericaexon
TCONS_00017528-exon-sc0000269-1575043694:362425..362632TCONS_00017528-exon-sc0000269-1575043694:362425..362632Clytia hemisphaericaexon
TCONS_00017528-exon-sc0000269-1491911889:362941..363775TCONS_00017528-exon-sc0000269-1491911889:362941..363775Clytia hemisphaericaexon
TCONS_00017528-exon-sc0000269-1510915933:362941..363775TCONS_00017528-exon-sc0000269-1510915933:362941..363775Clytia hemisphaericaexon
TCONS_00017528-exon-sc0000269-1575043694:362941..363775TCONS_00017528-exon-sc0000269-1575043694:362941..363775Clytia hemisphaericaexon
TCONS_00017528-exon-sc0000269-1491911889:364064..364756TCONS_00017528-exon-sc0000269-1491911889:364064..364756Clytia hemisphaericaexon
TCONS_00017528-exon-sc0000269-1510915933:364064..364756TCONS_00017528-exon-sc0000269-1510915933:364064..364756Clytia hemisphaericaexon
TCONS_00017528-exon-sc0000269-1575043694:364064..364756TCONS_00017528-exon-sc0000269-1575043694:364064..364756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:362425..364756 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.169213	0	0	0	0	0	0	0	0	0	0	9.03406	25.2203	0.453476	0.298506	0.265657	0	0.269563	0.328708	0.900183	1.62267	4.33522	5.0599	0	0.135998	0.0695726	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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