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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017541 ID=TCONS_00017541|Name=TCONS_00017541|organism=Clytia hemisphaerica|type=transcript|length=1184bpRun BLAST on NCBI protein sequence of TCONS_00017541-protein >TCONS_00017541-protein ID=TCONS_00017541-protein|Name=TCONS_00017541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp MPPKKADKASKKTQEKAKQKVVEDKTFGLKNKKGKKQQTYIKTVQHQVQGRun BLAST on NCBI transcript from alignment at sc0000269:75234..92998- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017541 ID=TCONS_00017541|Name=TCONS_00017541|organism=Clytia hemisphaerica|type=transcript|length=17765bp|location=Sequence derived from alignment at sc0000269:75234..92998- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000269:75234..92998- >TCONS_00017541 ID=TCONS_00017541|Name=TCONS_00017541|organism=Clytia hemisphaerica|type=CDS|length=11253bp|location=Sequence derived from alignment at sc0000269:75234..92998- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017541 vs. Swiss-Prot (Human)
Match: ZC3HF (Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 3.285e-79 Identity = 147/258 (56.98%), Postives = 190/258 (73.64%), Query Frame = 1
Query: 289 VQHQV---QGNQKKAGEANAPXXXXXXXXXXXXXXXNDLFKPVQEVQKVAAGVDPKSVLCSYFKQGTCGKGNKCKFSHDLTIERKSEKRSMYSDERDG--KKESMEDWDQDTLEDVVNKKHGATNTN--KTDIVCKFFLDAIEKGLYGWFWNCPSGNK-CIYRHALPPGFVLXXXXXXXXXXXXXITLEEHIENERKQLTGDLTPVTLQTFLAWKKRKIQEKKDKLAAEMSKKKEDFKTGKLLGKISGKEVFLFKPEM 1038
V HQV Q N ++ ++ A K K++ ++K+L+ELN+LFKPV QK++ G DPKSV+C++FKQG C KG+KCKFSHDLT+ERK EKRS+Y D RD +K++M++WD+ LE+VVNKKHG KT IVCK FL+AIE YGWFW CP G C+YRHALPPGFVL K KK EE E++I+LE+ IE ER L ++T +TL++FLAWKKRK QEK DKL +M ++K DFK GK L ISG+EVF F+PE+
Sbjct: 46 VTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVL-KKDKKKEEKEDEISLEDLIERERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKAL-VISGREVFEFRPEL 301 The following BLAST results are available for this feature:
BLAST of TCONS_00017541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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