TCONS_00016994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016994
Unique NameTCONS_00016994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016994 ID=TCONS_00016994|Name=TCONS_00016994|organism=Clytia hemisphaerica|type=transcript|length=459bp
GGGATATGTGGGATTGGTGTAAATACAGTGTAgactttttcaaaatcatt
gTCAAGATTTTTCATTCTCTTAAATTTTCAATATGAATGAACAAAAACAT
TTTGGACTTTGACCAATTTTAATTCTCAATGGTATCGTcataaatgacat
cattttgcCCAGCTAAATAACAATGTAtcgaaatataattttcagtaTAG
GTTTTGACTCTTTTTTATATCAGTTTTCATGCTCttttaaaatagtaaaa
atgtttattaacttttattttttgttgccCCTGTGACTGATGTCATTTAT
TGTAAGAGTTGTGGCAGAATTTTATATCACAAGAATTTCTTGGTCCCTGC
TTAAATGTCTGATTTTTACattacttttttcatattgtaATATTTGTTAT
GGAAGGTCTTTTGATTTTACAGTACTCAGCAgaatattatatttatgtta
gactttttg
Run BLAST on NCBI

transcript from alignment at sc0000255:263270..263728

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016994 ID=TCONS_00016994|Name=TCONS_00016994|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0000255:263270..263728 (Clytia hemisphaerica)
caaaaagtctaacataaatataatattcTGCTGAGTACTGTAAAATCAAA
AGACCTTCCATAACAAATATtacaatatgaaaaaagtaatGTAAAAATCA
GACATTTAAGCAGGGACCAAGAAATTCTTGTGATATAAAATTCTGCCACA
ACTCTTACAATAAATGACATCAGTCACAGGggcaacaaaaaataaaagtt
aataaacatttttactattttaaaaGAGCATGAAAACTGATATAAAAAAG
AGTCAAAACCTAtactgaaaattatatttcgaTACATTGTTATTTAGCTG
GgcaaaatgatgtcatttatgACGATACCATTGAGAATTAAAATTGGTCA
AAGTCCAAAATGTTTTTGTTCATTCATATTGAAAATTTAAGAGAATGAAA
AATCTTGAcaatgattttgaaaaagtcTACACTGTATTTACACCAATCCC
ACATATCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009516XLOC_009516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016994-exon-sc0000255-1491911889:263270..263728TCONS_00016994-exon-sc0000255-1491911889:263270..263728Clytia hemisphaericaexon
TCONS_00016994-exon-sc0000255-1510915933:263270..263728TCONS_00016994-exon-sc0000255-1510915933:263270..263728Clytia hemisphaericaexon
TCONS_00016994-exon-sc0000255-1575043694:263270..263728TCONS_00016994-exon-sc0000255-1575043694:263270..263728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:263270..263728 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.567644	1.38386	0	0	0	0	0	0.170806	0.119586	0	0	0.0945119	0	0	0	0.0864765	0	0.109192	0.301709	0.157858	0.54883	0.602325	0.325425	0	0	0	0	0.20767	0.63004	0.802389
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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