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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016918 ID=TCONS_00016918|Name=TCONS_00016918|organism=Clytia hemisphaerica|type=transcript|length=310bp
GTCAACTCTTTGGTTTGTGGCTCAGAATCATAAACAAATGATCAAAATGA
AACTCTTCACGATTATGCCTTTGGTACTAAACATTGCATACTGTATCCAA
CCACAATTCAAGAATGCACAGCCATACACTCCAATTGATTCCACCAAACT
TGATCAACTTCCAACGATGCTCAATGCCACCAATCCAGGTCCGTATGGTT
TCAGCAGTGCGACGATTTTGTATCATGGAAATATCCAAGAAAGTGTGAAT
AACCCAGTTATTGAGATCAAGAATGGAATGACTGGAACACAGATTCAAAT
TAGAGTAAGT Run BLAST on NCBI protein sequence of TCONS_00016918-protein >TCONS_00016918-protein ID=TCONS_00016918-protein|Name=TCONS_00016918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
STLWFVAQNHKQMIKMKLFTIMPLVLNIAYCIQPQFKNAQPYTPIDSTKL
DQLPTMLNATNPGPYGFSSATILYHGNIQESVNNPVIEIKNGMTGTQIQI
RVS Run BLAST on NCBI transcript from alignment at sc0000254:278495..281322+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016918 ID=TCONS_00016918|Name=TCONS_00016918|organism=Clytia hemisphaerica|type=transcript|length=2828bp|location=Sequence derived from alignment at sc0000254:278495..281322+ (Clytia hemisphaerica)
GTCAACTCTTTGGTTTGTGGGTAACAATTTTCAAATAGTTGTGACCTTTT
GGAAGCGTGCGTTAGAGTTTATTATTACCGAACGAACACTTTTACTAAGT
TCCttttgatacaggggtgttccttttaaaaatgtttagatCCACTGGTA
GCAATAATTGTAGTTGAATTGTTGTACATTAAAGACACGAATTTACGAGC
CTCGAAGCTAAGATACAAGTACTGCCTCGCggggggacgtgccgctggtc
agggtcccttttttaggctctgaagatatctgacagggtgttaaatttac
taattttcaaaatgtttaccTAACAGGGTCGACTTtcggtaatttttttc
agggtggaaatttttagaaaatttttcaatttgttgtctgcttttagtca
ttttggcaacttttcagggtgaaaatgggaaaaaaatgtcgagCTATGGA
GAACATTTGACCGTGAATGTACttgcagttgacgctctctgatTCGATAT
TTTTCTAATTGATACATTCCATTATTCAATAATAATGAAAGCCACCATCA
ACAAGAAACACTCATAAACGACACGCTCTACCACTCGATGCGCTCCCtta
ttacacccccttctcacagacccactgggaaaattggccaaaatatcgtc
cccggtggaaaattattctcacattttcatccccactgaaaataatcaaa
taaacgcATCCTCGCTTCAAAATATTCactatttttcccatcaaaagaat
tgaaatccccagccataaataaatatgggaatatcaatctccatcgagtt
tcagtccattatttttatccccactggctgaaaaaaatcctaccgggttt
gtgagaagggggtatcttattcgatgaaaattcaattcctCTTGAAAAAC
TGTTAGTTTTCAAATCGAGCCTGTAATAGTTATATTCTATATTTCCTTGT
TCTTCTTTTAGCTCAGAATCATAAACAAATGATCAAAATGAAACTCTTCA
CGATTATGCCTTTGGTACTAAACATTGGTAAGTATAAGATCGtccaacat
tttttgaaacctttaaaaatgttctgaaaTTGTTCTGTTTAtctcaccat
tttgtgagtattttttgtgCAATTCCTAAACAATTGGGTGTTCTATATTT
CTTATGATTTAGCCCATCGAAGCTTTGCATCGCGCAGAATGGGGTTTcct
aattttgacgttcgaataTCTGACGTagaaaaagacgggggtaaacgttc
gaaaatctgtCAATAAAGCCGCGGGGAATGTTTTTCGTGTTTTTCTAGTG
TATTATCATGGTAATATATTGATATTCTAATCTTTTTTTATTGGAAATAT
NgtgtgttcttatataatttgctctcacgaaaaaaccgttagttaTGCCT
GGTACACACTACTACACCTCTTATTATCATTTAACGTTTAATTACAAAGA
TTCCGGGGGGCATTGACCTTGACGACCGCCGGGGACGTGCCGCTCTGAAA
AGTAaccaaaatgactaaaagtataaaaaattgtcctgagaatttacaaa
atttgtGACCCTCTTCCACCcgccccaaaaaaaaaacataacgaattttt
ctgaattttatgcATATCTACACTCCTCCCTTTTCATTTTAGCATACTGT
ATCCAACCACAATTCAAGAATGCACAGCCATACACTCCAATTGATTCCAC
CAAACTTGATCAACTTCCAACGATGCTCAATGCCACCAATCCAGGTACCA
AGTGAAAGATGCAGCACTGATAAAATAATCGTTTCTCCCTCACACCCCAA
ACCCAAAGACTCGCTAAATATCGTCGcagcaaaataaaaaagctttaagt
ccaTTTATTGGAAAATTGATGAGTTACGACCATAccgcttttagaaaaat
aagaattttttactttattttcaggGTAAAAAAGTTTAGGACAAAAAAGC
CTTGCCCAGAGTGGAAACAATTttggacttaaggcttttttaacacaaaa
atcaATTGTTAGTGGTTTTTCAGGATTtaaggaaaaataatttaaaattg
attttctcaaaacaacaaaaatttgatgttttgttaAATTATCAGTAATT
TTTCCGCCATAATGGAAGAAGGAAAGGTTCGAAAAAGGTGATCCCTTACC
TCCCTTACGCAAATCAAACGTTTGCTTCTCTCAAGGTTGCACACATTATC
atcatcccagctggcacacgacaTTGTTTTATCGTTtgtctaatgttcat
aacgtccatataatgtaagatgaacgttgaaacaacgttgtgtaccagct
gagATACTTCGATCTTGGTCCCAAACGCTACACACAACTACAATCTCGTT
CCATGCATATTATCAGCATATTATTGTCTACCAATGGCCTTCATCAGTAA
CGTCGATAGAGGAATACATGGGAACGGACTTGGGCCGCAAAACTAGTACC
ATTATTTTCTGGGTATCTGACACATTGGAACCATGATTTGACAGTTTCAA
TTTTTATGGTTTTTATCTtcctacagttgactctcgctaattcgaactcg
aacggagAATCCTTATCTGGTCGAGTtatagagagattcgaattatagaa
aggatTCAGAGGTTTTCTTCTTGACGGAGACTacaaacaagttcgaatta
tagaaagattcaaaatagaagttcgaataagcgagactAATGTATTTTCA
ATTCAGGTCCGTATGGTTTCAGCAGTGCGACGATTTTGTATCATGGAAAT
ATCCAAGAAAGTGTGAATAACCCAGTTATTGAGATCAAGAATGGAATGAC
TGGAACACAGATTCAAATTAGAGTAAGT Coding sequence (CDS) from alignment at sc0000254:278495..281322+ >TCONS_00016918 ID=TCONS_00016918|Name=TCONS_00016918|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0000254:278495..281322+ (Clytia hemisphaerica)
TCAACTCTTTGGTTTGTGGCTCAGAATCATAAACAAATGATCAAAATGAA
ACTCTTCACGATTATGCCTTTGGTACTAAACATTGCATACTGTATCCAAC
CACAATTCAAGAATGCACAGCCATACACTCCAATTGATTCCACCAAACTT
GATCAACTTCCAACGATGCTCAATGCCACCAATCCAGGTCCGTATGGTTT
CAGCAGTGCGACGATTTTGTATCATGGAAATATCCAAGAAAGTGTGAATA
ACCCAGTTATTGAGATCAAGAATGGAATGACTGGAACACAGATTCAAATT
AGAGTAAGTTCAACTCTTTGGTTTGTGGCTCAGAATCATAAACAAATGAT
CAAAATGAAACTCTTCACGATTATGCCTTTGGTACTAAACATTGCATACT
GTATCCAACCACAATTCAAGAATGCACAGCCATACACTCCAATTGATTCC
ACCAAACTTGATCAACTTCCAACGATGCTCAATGCCACCAATCCAGGTCC
GTATGGTTTCAGCAGTGCGACGATTTTGTATCATGGAAATATCCAAGAAA
GTGTGAATAACCCAGTTATTGAGATCAAGAATGGAATGACTGGAACACAG
ATTCAAATTAGAGTAAGTTCAACTCTTTGGTTTGTGGCTCAGAATCATAA
ACAAATGATCAAAATGAAACTCTTCACGATTATGCCTTTGGTACTAAACA
TTGCATACTGTATCCAACCACAATTCAAGAATGCACAGCCATACACTCCA
ATTGATTCCACCAAACTTGATCAACTTCCAACGATGCTCAATGCCACCAA
TCCAGGTCCGTATGGTTTCAGCAGTGCGACGATTTTGTATCATGGAAATA
TCCAAGAAAGTGTGAATAACCCAGTTATTGAGATCAAGAATGGAATGACT
GGAACACAGATTCAAATTAGAGTAAGTTCAACTCTTTGGTTTGTGGCTCA
GAATCATAAACAAATGATCAAAATGAAACTCTTCACGATTATGCCTTTGG
TACTAAACATTGCATACTGTATCCAACCACAATTCAAGAATGCACAGCCA
TACACTCCAATTGATTCCACCAAACTTGATCAACTTCCAACGATGCTCAA
TGCCACCAATCCAGGTCCGTATGGTTTCAGCAGTGCGACGATTTTGTATC
ATGGAAATATCCAAGAAAGTGTGAATAACCCAGTTATTGAGATCAAGAAT
GGAATGACTGGAACACAGATTCAAATTAGAGTAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016918-exon-sc0000254-1491911889:278495..278514 | TCONS_00016918-exon-sc0000254-1491911889:278495..278514 | Clytia hemisphaerica | exon |
| TCONS_00016918-exon-sc0000254-1510915933:278495..278514 | TCONS_00016918-exon-sc0000254-1510915933:278495..278514 | Clytia hemisphaerica | exon |
| TCONS_00016918-exon-sc0000254-1575043694:278495..278514 | TCONS_00016918-exon-sc0000254-1575043694:278495..278514 | Clytia hemisphaerica | exon |
| TCONS_00016918-exon-sc0000254-1491911889:279456..279521 | TCONS_00016918-exon-sc0000254-1491911889:279456..279521 | Clytia hemisphaerica | exon |
| TCONS_00016918-exon-sc0000254-1510915933:279456..279521 | TCONS_00016918-exon-sc0000254-1510915933:279456..279521 | Clytia hemisphaerica | exon |
| TCONS_00016918-exon-sc0000254-1575043694:279456..279521 | TCONS_00016918-exon-sc0000254-1575043694:279456..279521 | Clytia hemisphaerica | exon |
| TCONS_00016918-exon-sc0000254-1491911889:280137..280238 | TCONS_00016918-exon-sc0000254-1491911889:280137..280238 | Clytia hemisphaerica | exon |
| TCONS_00016918-exon-sc0000254-1510915933:280137..280238 | TCONS_00016918-exon-sc0000254-1510915933:280137..280238 | Clytia hemisphaerica | exon |
| TCONS_00016918-exon-sc0000254-1575043694:280137..280238 | TCONS_00016918-exon-sc0000254-1575043694:280137..280238 | Clytia hemisphaerica | exon |
| TCONS_00016918-exon-sc0000254-1491911889:281201..281322 | TCONS_00016918-exon-sc0000254-1491911889:281201..281322 | Clytia hemisphaerica | exon |
| TCONS_00016918-exon-sc0000254-1510915933:281201..281322 | TCONS_00016918-exon-sc0000254-1510915933:281201..281322 | Clytia hemisphaerica | exon |
| TCONS_00016918-exon-sc0000254-1575043694:281201..281322 | TCONS_00016918-exon-sc0000254-1575043694:281201..281322 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000254 | supercontig | sc0000254:278495..281322 + |
Blast
The following BLAST results are available for this feature:
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