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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016542 ID=TCONS_00016542|Name=TCONS_00016542|organism=Clytia hemisphaerica|type=transcript|length=2137bp
atttttctcagaggaccacccttttagtacactgtactaactcaatttaa
cctaaaaaatacaccaccccaccagctatgggccagtacactgactcAAT
ACCCCCCCCCTGAATCCCTAAaaggacataatcaccatggtaattgtttg
aatacgagacaagtgatgttcgtgacatgatttataaaaaggtctattgt
tttGGCTACAGGAATTCGCATTCTTGTCGACCCTCTAAGAGTCTATTGTC
ATTTTTCTTAGATGAGGAAAACGGGATATCAAAGTCTTTCAATCCTGGAC
TAAATGTAAGCCATTTTGATCGGAGCTTGGATATGATTGATTGGTGATTC
TGTACCAAACAAACGGACACGGCTTTGCGTGTTGTGATTAAGATAGGCTA
GGTAGATGTAGGTACGTCGAATGCATTTCCCGAGCCTTTTCCAGCACACA
TATGTCAAGAATAGAGAGATAGAGATAGTTTGCCCAGAAAAAGTTTCGTG
ATTTGAGCTTCAAATtattgatggccaaaatataagTAATTTCAAATGAT
CAATAGATATGAAAAAGCTCTCCTAATCCTCCAATGAAGCCATCCATATA
TTAAGTACGCTgtgaaagggggggggggggggtaaagcAGACGTCTATTG
TTTATAGACTCGTTtctattgtttgtttttcttcgtaCAAAGGGTGTCAA
ATATGTTGAAAGTTTTTGCGCAAGTAGTATATGGATGACCCCAAACGGTG
ATTCTGCCTTCATAGGAAAACTTACCAAGAATCGGTCTCACTTTACAATA
TCGCCGGACATCTGGAATTTCGGGTTAAACCATTGTTTTCCGTCACATTT
AGGCAATATAGGATAACATATAGGATACCACATCTCTTTCAAAAAGCCCA
AATGAACTTTTTCCAGGGTTTATAAAGCAAGCAAGGAAGCCCCTTGAGCT
CAGCAATAGAaaatattgatttaaaaaaaggtatAGTTACATTAAAGACA
GgacattaaaattcaaattctaGGTGCTCGATGTGATATCAAACGTCTCA
TCAGAAAGCAATCTCTTACAAATTCCGAGTTCCGAAGAGTTCTCAAAAAG
CGTCAAGTTCTTAAAGGGTTCCCAGAACTACCCAATGAACTCCTAGTGCA
ATGTATTTATTGCTTTTACGACTTTTCTCCTATGTTTGAGGTAgtatttt
catttagaaattcagatgtattttgaagtcaatttttatcaaatgtACAT
ATTTATAACATCATTTAGGTATGATATAAAATATTTCTAGTTTTTACGAT
TAATTTGTAGAAGTTAACGCTCTCTGTTCAATTTCCTAGAGCTATTTTAG
TCATATTGCATCTATGCTCATTTATTTCTCGCTATGCTTTAAATCGGTTT
CTCCAGTTCTGTTCTTTTCATTGTTGGAAAGACAAATATGAAAAGCTGAT
CGTCTGAAAATGATTAACCCGGTTTACCAAAATTGTCGAAATTTCTCCAA
TTTCagacaaaaattttggattttcccCAATTTTAAACCGTtacaattct
tgatatgcgtaagtcaagatgacgtcatattttcaaCGGAATCACTCgaa
aaaagccggattttgacctccgtgtttctatttttagtaacagagagggg
tCAAATCCCGGATTTCTgtgggtgtttccgctagaaaaataaCTTACGCA
TATTGAGAATGCAACACTTACTTACACCTACAGAAGGTCAACTACTTAAG
TCCCACTGTCTTAATGTTATTCTAAAGTGCTTCGGTCGCTTTGCTATTCC
AGGCCTCTTGATATTCATGAGGTAaccttttatacggaaacaccccAAAA
ACATCCGGCGTATCCGTATAAAAgatgacgtcatgaatatcaagaataac
CATATTACCTAttgaaaacgggaaatattttagttttttcaaagtGGTTT
CTATATTTGATTTCTTAAGTAAATTATTTACGATATTCACCTTCTTTACT
TGAAAAACTCATAacatgttttttgaaaaacgtAGAAACTTGTCTTAAAT
AGCTCTTTTCGAAAGCGGATATTGAAAATCCTGGGACTCGAATATTTATC
atcaaattcaaattatttccTTGAAATAAGAACCAAG Run BLAST on NCBI transcript from alignment at sc0000241:340728..342864+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016542 ID=TCONS_00016542|Name=TCONS_00016542|organism=Clytia hemisphaerica|type=transcript|length=2137bp|location=Sequence derived from alignment at sc0000241:340728..342864+ (Clytia hemisphaerica)
atttttctcagaggaccacccttttagtacactgtactaactcaatttaa
cctaaaaaatacaccaccccaccagctatgggccagtacactgactcAAT
ACCCCCCCCCTGAATCCCTAAaaggacataatcaccatggtaattgtttg
aatacgagacaagtgatgttcgtgacatgatttataaaaaggtctattgt
tttGGCTACAGGAATTCGCATTCTTGTCGACCCTCTAAGAGTCTATTGTC
ATTTTTCTTAGATGAGGAAAACGGGATATCAAAGTCTTTCAATCCTGGAC
TAAATGTAAGCCATTTTGATCGGAGCTTGGATATGATTGATTGGTGATTC
TGTACCAAACAAACGGACACGGCTTTGCGTGTTGTGATTAAGATAGGCTA
GGTAGATGTAGGTACGTCGAATGCATTTCCCGAGCCTTTTCCAGCACACA
TATGTCAAGAATAGAGAGATAGAGATAGTTTGCCCAGAAAAAGTTTCGTG
ATTTGAGCTTCAAATtattgatggccaaaatataagTAATTTCAAATGAT
CAATAGATATGAAAAAGCTCTCCTAATCCTCCAATGAAGCCATCCATATA
TTAAGTACGCTgtgaaagggggggggggggggtaaagcAGACGTCTATTG
TTTATAGACTCGTTtctattgtttgtttttcttcgtaCAAAGGGTGTCAA
ATATGTTGAAAGTTTTTGCGCAAGTAGTATATGGATGACCCCAAACGGTG
ATTCTGCCTTCATAGGAAAACTTACCAAGAATCGGTCTCACTTTACAATA
TCGCCGGACATCTGGAATTTCGGGTTAAACCATTGTTTTCCGTCACATTT
AGGCAATATAGGATAACATATAGGATACCACATCTCTTTCAAAAAGCCCA
AATGAACTTTTTCCAGGGTTTATAAAGCAAGCAAGGAAGCCCCTTGAGCT
CAGCAATAGAaaatattgatttaaaaaaaggtatAGTTACATTAAAGACA
GgacattaaaattcaaattctaGGTGCTCGATGTGATATCAAACGTCTCA
TCAGAAAGCAATCTCTTACAAATTCCGAGTTCCGAAGAGTTCTCAAAAAG
CGTCAAGTTCTTAAAGGGTTCCCAGAACTACCCAATGAACTCCTAGTGCA
ATGTATTTATTGCTTTTACGACTTTTCTCCTATGTTTGAGGTAgtatttt
catttagaaattcagatgtattttgaagtcaatttttatcaaatgtACAT
ATTTATAACATCATTTAGGTATGATATAAAATATTTCTAGTTTTTACGAT
TAATTTGTAGAAGTTAACGCTCTCTGTTCAATTTCCTAGAGCTATTTTAG
TCATATTGCATCTATGCTCATTTATTTCTCGCTATGCTTTAAATCGGTTT
CTCCAGTTCTGTTCTTTTCATTGTTGGAAAGACAAATATGAAAAGCTGAT
CGTCTGAAAATGATTAACCCGGTTTACCAAAATTGTCGAAATTTCTCCAA
TTTCagacaaaaattttggattttcccCAATTTTAAACCGTtacaattct
tgatatgcgtaagtcaagatgacgtcatattttcaaCGGAATCACTCgaa
aaaagccggattttgacctccgtgtttctatttttagtaacagagagggg
tCAAATCCCGGATTTCTgtgggtgtttccgctagaaaaataaCTTACGCA
TATTGAGAATGCAACACTTACTTACACCTACAGAAGGTCAACTACTTAAG
TCCCACTGTCTTAATGTTATTCTAAAGTGCTTCGGTCGCTTTGCTATTCC
AGGCCTCTTGATATTCATGAGGTAaccttttatacggaaacaccccAAAA
ACATCCGGCGTATCCGTATAAAAgatgacgtcatgaatatcaagaataac
CATATTACCTAttgaaaacgggaaatattttagttttttcaaagtGGTTT
CTATATTTGATTTCTTAAGTAAATTATTTACGATATTCACCTTCTTTACT
TGAAAAACTCATAacatgttttttgaaaaacgtAGAAACTTGTCTTAAAT
AGCTCTTTTCGAAAGCGGATATTGAAAATCCTGGGACTCGAATATTTATC
atcaaattcaaattatttccTTGAAATAAGAACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016542-exon-sc0000241-1491911889:340728..342864 | TCONS_00016542-exon-sc0000241-1491911889:340728..342864 | Clytia hemisphaerica | exon |
| TCONS_00016542-exon-sc0000241-1510915933:340728..342864 | TCONS_00016542-exon-sc0000241-1510915933:340728..342864 | Clytia hemisphaerica | exon |
| TCONS_00016542-exon-sc0000241-1575043694:340728..342864 | TCONS_00016542-exon-sc0000241-1575043694:340728..342864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000241 | supercontig | sc0000241:340728..342864 + |
Blast
The following BLAST results are available for this feature:
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