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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016472 ID=TCONS_00016472|Name=TCONS_00016472|organism=Clytia hemisphaerica|type=transcript|length=2726bpRun BLAST on NCBI protein sequence of TCONS_00016472-protein >TCONS_00016472-protein ID=TCONS_00016472-protein|Name=TCONS_00016472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=571bp MRMIFGEDDVELSPSSFEREEKKLIRIVKSKKMEMEYLINLLVFIFTVKNRun BLAST on NCBI transcript from alignment at sc0000240:186280..193295+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016472 ID=TCONS_00016472|Name=TCONS_00016472|organism=Clytia hemisphaerica|type=transcript|length=7016bp|location=Sequence derived from alignment at sc0000240:186280..193295+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000240:186280..193295+ >TCONS_00016472 ID=TCONS_00016472|Name=TCONS_00016472|organism=Clytia hemisphaerica|type=CDS|length=22308bp|location=Sequence derived from alignment at sc0000240:186280..193295+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016472 vs. Swiss-Prot (Human)
Match: P4HA1 (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2) HSP 1 Score: 286.574 bits (732), Expect = 2.495e-85 Identity = 184/525 (35.05%), Postives = 286/525 (54.48%), Query Frame = 1
Query: 277 YTSIAHMEPLLDIEGRLVKIAREYLQKERRRLGEFKQFAKSVEDAMELSKDEPLKYLGNPINSYLIIKRFTSGWRELTSRLEIDDSKVDEMKSIIESNKYQLPTYEIDLLGATGSIIRLQDTYELTAREISDGKIKGISRSAHQMTAEDCIHIAEYAQHHRRYIRMEEWAKEAERIFDDPSLSHRIGNVSRLAVYEILGWTAYLSNDLPTALKYTKLVLEIDPKNADALKNEEFYDFYV--RENIEKWLTEEQWDYAEALKHLKHFRVGTLVQ------ACTKNNKPVKIKDASKLVCFL--TKDSPLLLLKPIRTTRVHDNPEVLIFHNILSDKEMTTLKKLATPYLRQAKV---VEGDITEANYRIAKTMFLQ--ENFPGVKKINTKLNRRFEAMTGLNTDTAEQLQINNYGLGGQYEFHHDHG--EEGSLLANHPDGNRLATLLVYLTDVERGGETVFTRLGISVSPNKGDAVFWYNLFRNGQGIDDTLHASCPVISGSKWVANKWFHNFGNEFRRKCLLRE 1800
+TSI M L+ E LV ++Y++ E +L + K++A+ ++ + +P ++G+P+N++ ++KR + W EL + + D S D S + + P E D +GA +++RLQDTY L IS G + G+ + +TAEDC + + A Y E W ++A R D+ +S + +++V + L + Y DL AL TK +LE+DP++ A N +++++ + +++ K +++Q D K K V L + C + + KL C +P +L P + D P ++ FH+I+SD E+ +K LA P LR+A + + GD+ +YRI+K+ +L EN P V +IN R + +TGL+ TAE+LQ+ NYG+GGQYE H D +E GNR+AT L Y++DV GG TVF +G SV P KG AVFWYNLF +G+G T HA+CPV+ G+KWV+NKW H G EFRR C L E
Sbjct: 22 FTSIGQMTDLIHTEKDLVTSLKDYIKAEEDKLEQIKKWAEKLDRLTSTATKDPEGFVGHPVNAFKLMKRLNTEWSELENLVLKDMS--DGFISNLTIQRQYFPNDE-DQVGAAKALLRLQDTYNLDTDTISKGNLPGVKHKSF-LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS----TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKEKDVNKSASDDQSDQKTTPKK-KGVAVDYLPERQKYEMLCRGEGIKMTPRRQKKLFCRYHDGNRNPKFILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYEN-PVVSRINM----RIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRPCTLSE 532 The following BLAST results are available for this feature:
BLAST of TCONS_00016472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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