TCONS_00016145 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016145
Unique Name	TCONS_00016145
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1865

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000226:344802..348082-

transcript sequence

>TCONS_00016145 ID=TCONS_00016145|Name=TCONS_00016145|organism=Clytia hemisphaerica|type=transcript|length=1865bp
GTCgcattttgcttgtttttaggATTAGTCTAATGTAAAGGGAATTTTTT
CATGGATTTTCTACGGATTTTAAAGGTCattggatttttatttttttatt
actttgaatGGAGCATGGTAAGAAAATGATGAGTGAATGGTATTTTTGAA
CTGGAAGGTGAATTAGAAAAGAAGTAAAAGTTTTGGATCTGACAGGGAAG
GAACTAGCCGGGAATTTACAATTGAGCAGAAATTTAAGATAAACAGGTTA
TTTTTGTTGTCAGTAATGAGCAAGGGAAATTGATAGAAATATTATCGAAT
CATTTCTGATATAAAGTAAAGAGATTCTTGTTAATGAATTATGATGTGTG
TGTTAATTTTGATCCAGCTTCATTGTCACAGGGtgcattttcaaatttcg
aaTAATTCTATTTTCAGGTAGAACATTtacgaaaaaaggaaaaaacattC
ACAGATCATCTGAATGAATAAAAGACAACACAAGAATAACCAAAGAACAG
AAAAACAGAAACCTTCATCCATCAGAACATTATGGTGACTTCAATTCGAA
CTCCATCTACATATAACGCAGAACACGAAGTGTTTGTAGAAAATTCACGT
GTGGCAATCGAACAACCTTTCATCTGTGTGGATGGGTACATTGTAGCCTG
TCGATTTGATGGCGAAAGATGCACTCCATCGTTCGCAATCAGCATCATGG
ATCTACTCAATGCTGTCAAAACTGAACTTTATACTTtaaagGCTGGCGTC
ACTATGCCGAAAAACCGTACGTCCAACAGCCCTCCACATTCTCCTTCAAC
GAGCGCTAAACGACTTTCACCGACAATGCCTCACCCGTTAAATTATTCCC
GACGAAACTTATTCCGACAAAATAGTCGTGACAACAATAACACACGAAAA
CGATTCAGCGACGACTTAACGGGCGTCTCTTACGACCACATCGAAAACAC
TTATCGTAACTCGTTCTTATTACCGACTCGCGACAACACGAAATTACCGA
CACAACGAGAATCAACGAGTAAACTCGGGACCGATTTAAACGATAATGAG
ATCGGAGAATTGGACACGAAAAAACTTTCAGAATTGGAACCACAAATACA
ATGGGTTCAAGAAAATTGCAGCGATTATGTAAATACCGAAACTGTCGAGA
ATTGTGCACAACTAAACACTTTATTAAATATTCTGATGAAAATGCCGTCA
GCGACTCTCGTCACAATGAAAATCGTCGGCTCATCGGAAATCAATGTGAC
GTATCAATTCATGGACAAATTCAAGCAGGACTACATGGTTGTAAAAATTA
ACCCTGGGTATGCGATGTTAATGAAAACCTTTTGAGCCCTGGGTTTGATA
GTTTCTTTTAGGCCAATCAAAAAACGACAAAGAAACtttaaattaacttt
taaaactatttttctcgattttgaggaaaatataaaaaatgtaaataaca
aTTAATTTATTTGTTTATGAAACTCATTCTGCAATTTATTCggaataact
ttttaaaaaactctGTTTTTAGGAgtctaaaatcttttttttaaatggaa
tTTATTCGTTTTGTAAATTATATTTTGACTTTAGCACTTTCTTTTTGTGT
GTTCATCCCTAAAAACtagtttcttttaaaaatcacagAGGTAGATTTAT
GTTTAGCTCCCTGGTCTTCCCACGCTTTCCCCATGTCCGATGTCCAAAAG
TACCCTTTGAAACCGTGTATACAACAAGACCTAATTTAActttttaggaa
aattattttataacttttttcCTGCTAGTAATTGTGTCGTGTTTTTTGTT
GTGAattttcagttaaaaaaaataactaaagaaaaataatggcgaaagtc
aaaaatcaaaaatta

Run BLAST on NCBI

transcript from alignment at sc0000226:344802..348082-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016145 ID=TCONS_00016145|Name=TCONS_00016145|organism=Clytia hemisphaerica|type=transcript|length=3281bp|location=Sequence derived from alignment at sc0000226:344802..348082- (Clytia hemisphaerica)
GTCGCATTTTGCTTGTTTTTAGGATTAGTCTAATGTAAAGGGAATTTTTT
CATGGATTTTCTACGGATTTTAAAGGTCATTGGATTTTTATTTTTTTATT
ACTTTGAATGGAGCATGGTAAGAAAATGATGAGTGAATGGTATTTTTGAA
CTGGAAGGTGAATTAGAAAAGAAGTAAAAGTTTTGGATCTGACAGGGAAG
GAACTAGCCGGGAATTTACAATTGAGCAGAAATTTAAGATAAACAGGTTA
TTTTTGTTGTCAGTAATGAGCAAGGGAAATTGATAGAAATATTATCGAAT
CATTTCTGATATAAAGTAAAGAGATTCTTGTTAATGAATTATGATGTGTG
TGTTAATTTTGATCCAGCTTCATTGTCACAGGGTGCATTTTCAAATTTCG
AATAATTCTATTTTCAGGTAGAACATTTACGAAAAAAGGAAAAAACATTC
ACAGATCATCTGAATGAATAAAAGACAACACAAGAATAACCAAAGAACAG
AAAAACAGAAACCTTCATCCATCAGAACATTATGGTGACTTCAATTCGAA
CTCCATCTACATATAACGCAGAACACGAAGTGTTTGTAGAAAATTCACGT
GTGGCAATCGAACAACCTTTCATCTGTGTGGATGGGTACATTGTAGCCTG
TCGATTTGATGGCGAAAGATGCACTCCATCGTTCGCAATCAGCATCATGG
ATCTACTCAATGCTGTCAAAACTGAACTTTATACTTTAAAGGTAAATTTT
GTTTTTTTGTTTCCTCATCAATTAAGTTTTTTCGCAAAGCAGTGCAAAGC
TGTTCAATTATTTATTTTGAGCAATCACTTCTTCATATTCTACGGACAAG
TCGAAAAATCAAGAACAAAAAATTAAGAATTAAAAAAAAAATCGGAAATA
AAAGACTTAAAGAGGCTTATCATGTTTATTTACTTCTTTAAGCCTAGTTT
TCCTGCGTCTCCACAATTAATGGTCTGTTTAAAATGAATTGTCAATGAGG
ATTACGGATAATTCTCTCTACAGACTTAATACCAAATTAAGTTCTTTTGA
AATGCGAATTGTGAACGTCACTTGCATAACCTTACATAACTCTACGAAAA
CCTAGACATTTGCTTCAAGTGAAATGAAATTGCTTTACCGAGGGTTTTTG
GGTGCCTGACTCCTGCTGTCATTTCAAAAAGCTCGACTTTATTTTTAAAT
GTCTGATAACATAGCCAAGTTTTACTCATATCCGCTTTTCAAAAAAGTTT
TAAGCAATTGCTGACTGCATTCAAAATATCTTTGCTCAGGAAATTCCAAT
TTCCTTCACGGTAACCTAAGGGAAATTACTATTAAATTGAAACTTCTATG
TGATGACTCAACATTTTGAGATAGATGTAAAGCAAAAGGGTTTTCAAACT
TTTAGAAATATTTTTGTCATGTTTTTGGATTTCATTTTCGTAAAAACTGG
TAAAAATATAATTTTAAAACAATAAGATTTTAGAAGACCCTACCCTCCAG
TAATTCTCATATCGTTAACGCAATCATATTGGATAAAAAGGTTTTCCACG
TGAATTATCAACGTGCCCGTAAGGTTGCCATAGCAATGGTGATTTTGCAA
TATTTTCAAAACAAAAATCAATGAAAGATAAAATACATCTCGAATAAGAG
AAAACCGCAAACCTATTTTATCTTATTTCCTGAAGTCGCGGTTTTCTACT
CGATTCAAATTACACCCAAAGTCATTACATTCAAAAATACAATTAAAACA
CTGACGCAAAAATAATATTTTCTCTGCAAACCGGTTTGACCAGCATTCAG
TCTAACAATTGTAAAATTGCTTTGTTTATGAACTAATTGTTCACCAGCTG
CGAGCTATGATTTAATGACTTTTAGACTGGTTTTGAATTTTAAAACTGTA
ATGCAATCGCTTCCGGTCTAGATTGACATTATGAAATCTCTTATTTTCCG
CTCGACAAACAGATACTTTAAACTCTCTTTAAGCGCTTTTAATGTTTGTT
CCAAATTCCTAAACCTGATGTCAACAAGATTTGTACAACGGAATTCCATT
AGTAACATAATGTATTAATCTTGCAAAGGAGAATACATAAGCTAACTTTC
AAGATTGTCCTATGCTTTAATCAAGTGATATAATGTATTATCTTCTTTCA
TGTATAGGCTGGCGTCACTATGCCGAAAAACCGTACGTCCAACAGCCCTC
CACATTCTCCTTCAACGAGCGCTAAACGACTTTCACCGACAATGCCTCAC
CCGTTAAATTATTCCCGACGAAACTTATTCCGACAAAATAGTCGTGACAA
CAATAACACACGAAAACGATTCAGCGACGACTTAACGGGCGTCTCTTACG
ACCACATCGAAAACACTTATCGTAACTCGTTCTTATTACCGACTCGCGAC
AACACGAAATTACCGACACAACGAGAATCAACGAGTAAACTCGGGACCGA
TTTAAACGATAATGAGATCGGAGAATTGGACACGAAAAAACTTTCAGAAT
TGGAACCACAAATACAATGGGTTCAAGAAAATTGCAGCGATTATGTAAAT
ACCGAAACTGTCGAGAATTGTGCACAACTAAACACTTTATTAAATATTCT
GATGAAAATGCCGTCAGCGACTCTCGTCACAATGAAAATCGTCGGCTCAT
CGGAAATCAATGTGACGTATCAATTCATGGACAAATTCAAGCAGGACTAC
ATGGTTGTAAAAATTAACCCTGGGTATGCGATGTTAATGAAAACCTTTTG
AGCCCTGGGTTTGATAGTTTCTTTTAGGCCAATCAAAAAACGACAAAGAA
ACTTTAAATTAACTTTTAAAACTATTTTTCTCGATTTTGAGGAAAATATA
AAAAATGTAAATAACAATTAATTTATTTGTTTATGAAACTCATTCTGCAA
TTTATTCGGAATAACTTTTTAAAAAACTCTGTTTTTAGGAGTCTAAAATC
TTTTTTTTAAATGGAATTTATTCGTTTTGTAAATTATATTTTGACTTTAG
CACTTTCTTTTTGTGTGTTCATCCCTAAAAACTAGTTTCTTTTAAAAATC
ACAGAGGTAGATTTATGTTTAGCTCCCTGGTCTTCCCACGCTTTCCCCAT
GTCCGATGTCCAAAAGTACCCTTTGAAACCGTGTATACAACAAGACCTAA
TTTAACTTTTTAGGAAAATTATTTTATAACTTTTTTCCTGCTAGTAATTG
TGTCGTGTTTTTTGTTGTGAATTTTCAGTTAAAAAAAATAACTAAAGAAA
AATAATGGCGAAAGTCAAAAATCAAAAATTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009020	XLOC_009020	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00016145-exon-sc0000226-1575043694:347342..348082	TCONS_00016145-exon-sc0000226-1575043694:347342..348082	Clytia hemisphaerica	exon
TCONS_00016145-exon-sc0000226-1575043694:344802..345925	TCONS_00016145-exon-sc0000226-1575043694:344802..345925	Clytia hemisphaerica	exon
TCONS_00016145-exon-sc0000226-1510915933:347342..348082	TCONS_00016145-exon-sc0000226-1510915933:347342..348082	Clytia hemisphaerica	exon
TCONS_00016145-exon-sc0000226-1510915933:344802..345925	TCONS_00016145-exon-sc0000226-1510915933:344802..345925	Clytia hemisphaerica	exon
TCONS_00016145-exon-sc0000226-1491911889:347342..348082	TCONS_00016145-exon-sc0000226-1491911889:347342..348082	Clytia hemisphaerica	exon
TCONS_00016145-exon-sc0000226-1491911889:344802..345925	TCONS_00016145-exon-sc0000226-1491911889:344802..345925	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000226	supercontig	sc0000226:344802..348082 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.18041	0	0	0.161287	0.54992	0.684028	0	0.768656	0.619661	0.183997	0.152758	0.162367	0	0.0982304	0	0	0	0	0.149927	0	0	0	0.369939	0.391178	0.138506	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00016145 vs. Swiss-Prot (Human)

BLAST of TCONS_00016145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00016145 (transcript) - C. hemisphaerica