TCONS_00016178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016178
Unique NameTCONS_00016178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016178 ID=TCONS_00016178|Name=TCONS_00016178|organism=Clytia hemisphaerica|type=transcript|length=279bp
TTTCGTTTGAGCAAGGTTAATGATAGGGCGATACAGAATCGCAATCTTAA
ACCATTTCATAGAACAGTGAAGAAGCAACAGAACCATGCATCTAAAAAAC
ACTTGTTACCTCATCAGATTCTTTCAAACTTGAAGTCtcgccaccaaaag
attttgacAGTCAATGGTGAGAAGCGAGATCATGGCTTCCAACAAAATTC
AGATTCATCACCTACACATGCTAATGAAGTTTCTGCAATCCGAACTAAAT
TCGATTTTCCAAACGACACACCAATAGAG
Run BLAST on NCBI

transcript from alignment at sc0000226:239334..239612

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016178 ID=TCONS_00016178|Name=TCONS_00016178|organism=Clytia hemisphaerica|type=transcript|length=279bp|location=Sequence derived from alignment at sc0000226:239334..239612 (Clytia hemisphaerica)
CTCTATTGGTGTGTCGTTTGGAAAATCGAATTTAGTTCGGATTGCAGAAA
CTTCATTAGCATGTGTAGGTGATGAATCTGAATTTTGTTGGAAGCCATGA
TCTCGCTTCTCACCATTGACTgtcaaaatcttttggtggcgaGACTTCAA
GTTTGAAAGAATCTGATGAGGTAACAAGTGTTTTTTAGATGCATGGTTCT
GTTGCTTCTTCACTGTTCTATGAAATGGTTTAAGATTGCGATTCTGTATC
GCCCTATCATTAACCTTGCTCAAACGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009038XLOC_009038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016178-exon-sc0000226-1491911889:239334..239612TCONS_00016178-exon-sc0000226-1491911889:239334..239612Clytia hemisphaericaexon
TCONS_00016178-exon-sc0000226-1510915933:239334..239612TCONS_00016178-exon-sc0000226-1510915933:239334..239612Clytia hemisphaericaexon
TCONS_00016178-exon-sc0000226-1575043694:239334..239612TCONS_00016178-exon-sc0000226-1575043694:239334..239612Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:239334..239612 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.57601	0.602908	0.42211	0	1.52248	0	0.999426	0	1.99105	3.66291	0.376034	1.54169	0	0	1.93725	0	0.574338	1.04431	1.61343	2.39991	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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