|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016043 ID=TCONS_00016043|Name=TCONS_00016043|organism=Clytia hemisphaerica|type=transcript|length=1021bp
CTGTGTGCAAGCATTAAAAACTCTAccttttcatcatttttcatttggaA
ATTCTTTACTTTTAGCTAGCAGAATGTATTaataaacaaaagattttcat
cttCCAAACTATCTTAAGCATTGGCTAACGCCATGGCTGATAAACTGAAA
GTCATCAGTGCGGTGGGTACAGCCGCCAAAGCCATAGTTGAGAATGGTGG
ACCTGGTTTAATGCAAGTGGTTGGTGATGGATTTGAAATGATCACCATAC
CTGATCCTACAGTTTTGATTGCGTTGTATGCAACTGAATTCACACTGGAT
GTTACGCACAGTATCTGGCAATGGTACGGTGGTGTGATAGATGGTCGACG
TTGTGCAGCAAATATCCAATCAGCGACATTCAGATGTGCTGGTGGTCTTT
TTGGTGGAATGGCGGGAATGACAGCTTTCGGAATGTTCCTTGGACCATCA
ACTGTTGTATTAGTTGcTGGTGGCTTTGTTGGAGCTTGTTATGGTGCATA
CAAAGGACTACAATTCGCTGATATTCTTAACCGTTTGTTCTTCGGTCTTC
CGACCAATGTTGTTTTACAAAAAGCGTACGATACTTTCGGTGTTTCCTGC
AACGCCACAATCCCTGAAGTGAACAAAGCTTACAGAAATTATTGCCGGAA
ACATCATCCCGACAAAGGCGGTGATAATGATGAATTTGTTAAAGGACAAT
TTTATATGGAAATCATTAGAGCTGATCGAATGGGCAAAGAACTGGGTTAC
AAACACTCATAGGGATTCTATACGGATATTCTACAGCCGGGTTTGCTTTT
GATTTGCCTTGCTCCTGAATGACTGGAGGAAGACAGTAAATCAGcgcttt
taccgtcctcaattttTCAGGTCACAAAAAAGTCACGCACAGTCACTCCT
CCGCCATCCTCAAAATATTATTGAGTTAATATATGGCCCTGTTCCTACGA
TTTTGGATTTAACCAGATTCTGACTGACTGGTATAAAATTTACCATGGTA
AAAGTGCTGAATTATTTTAAC Run BLAST on NCBI protein sequence of TCONS_00016043-protein >TCONS_00016043-protein ID=TCONS_00016043-protein|Name=TCONS_00016043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MADKLKVISAVGTAAKAIVENGGPGLMQVVGDGFEMITIPDPTVLIALYA
TEFTLDVTHSIWQWYGGVIDGRRCAANIQSATFRCAGGLFGGMAGMTAFG
MFLGPSTVVLVAGGFVGACYGAYKGLQFADILNRLFFGLPTNVVLQKAYD
TFGVSCNATIPEVNKAYRNYCRKHHPDKGGDNDEFVKGQFYMEIIRADRM
GKELGYKHS Run BLAST on NCBI transcript from alignment at sc0000225:188973..191126+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016043 ID=TCONS_00016043|Name=TCONS_00016043|organism=Clytia hemisphaerica|type=transcript|length=2154bp|location=Sequence derived from alignment at sc0000225:188973..191126+ (Clytia hemisphaerica)
CTGTGTGCAAGCATTAAAAACTCTAccttttcatcatttttcatttggaA
ATTCTTTACTTTTAGCTAGCAGAATGTATTaataaacaaaagattttcat
cttCCAAACTATCTTAAGCATTGGCTAACGCCATGGCTGATAAACTGAAA
GTCATCAGTGCGGTGGGTACAGCCGCCAAAGCCATAGTTGAGAATGGTGG
ACCTGGTTTAATGCAAGTGGTTGGTGATGGATTTGAAATGATCACCATAC
CTGATCCTACAGTTTTGATTGCGTTGTATGCAACTGAATTCACACTGGAT
GTTGTAAGTAAAGGCTAGGGCAAACTAGTTTTtcattgacaaaaatattg
agtCCAATatttatccaaaatttttgaagtattcgggtgttcttaacttt
ttgagttttaagtctaagaatcttcttaaaatgttcttattttcaccatt
ttttgtgAGTACTTTTGTCCTTTATTCAAAGATGTCAGGCggtttagagt
ccacaaagccttaaaatgttcttaacttgttcttgatgtTTTGACTATca
aagtcttatgttcttatttagtCCAGATGGGGTGCCTCCCCCAGATCAAG
CTCTTCTTcagttaaacttttttttctgatttcaagACTCACATTATCTG
CCAGTGGTAACCTTTTATTGGCTTTGGACACTATTAGATTGTTCTTATAC
TGTTCTTATCTTAGAGTAAGagtaaagtttttaggcttTATACAAAAGCT
TTACCGCAGAATTGCTTGAAATTCAGAACTTTTAAACTCAGCATTTCTCC
TaaattgttgttattttttaccattttgagCTTCTCATTGTTCTTATTGA
ATTGTTTAAAGACTCTGGCAATAGTAAAAAGGAAGTGGTAAACATTTTGA
GGCACAGAGCCTTTTGAGCACTTTGATtctcagattgttcttatacTATT
CTTATTTTTAGTGTAAGATTAAAGTTTTTAGGCTTTATACCGAATATTTC
ACTATGTTGACCCTATTTCAGTAGTTGGTGTCTTTTTTGGTCCGCCCTGA
ACAACCTTTTTGTCCTAGAGTTCCAGTCAATGTTCTACGAGAATATAATT
TTGCCGGTGTCATGACATCTTTTTCATCAGttacaactttttttctcatt
tcaagACGCACAGTATCTGGCAATGGTACGGTGGTGTGATAGATGGTCGA
CGTTGTGCAGCAAATATCCAATCAGCGACATTCAGATGTGCTGGTGGTCT
TTTTGGTGGAATGGCGGGAATGACAGCTTTCGGAATGTTCCTTGGACCAT
CAACTGTTGTATTAGTTGGTATGTGTAAAATGATCCAAACTCAAGCTTTG
TTCCTTagctcacttttttatgattctgatagcgctaaCAAAAGATATTG
TATCACGTCAATCATCGAAATCAaaaagtggctctgggtacgagatgaCC
AGAAAAAGCTTgaatctagcactttctttgttttcaaacaGAATATTATT
CCCAatgtattttattttcaatccagcgtttgtatgaaaaccacgcctat
tcggggctttaaactcaagtGGACTTTAAaacttcttttatttgtttagc
TGGTGGCTTTGTTGGAGCTTGTTATGGTGCATACAAAGGACTACAATTCG
CTGATATTCTTAACCGTTTGTTCTTCGGTCTTCCGACCAATGTTGTTTTA
CAAAAAGCGTACGATACTTTCGGTGTTTCCTGCAACGCCACAATCCCTGA
AGTGAACAAAGCTTACAGAAATTATTGCCGGAAACATCATCCCGACAAAG
GCGGTGATAATGATGAATTTGTTAAAGGACAATTTTATATGGAAATCATT
AGAGCTGATCGAATGGGCAAAGAACTGGGTTACAAACACTCATAGGGATT
CTATACGGATATTCTACAGCCGGGTTTGCTTTTGATTTGCCTTGCTCCTG
AATGACTGGAGGAAGACAGTAAATCAGcgcttttaccgtcctcaattttT
CAGGTCACAAAAAAGTCACGCACAGTCACTCCTCCGCCATCCTCAAAATA
TTATTGAGTTAATATATGGCCCTGTTCCTACGATTTTGGATTTAACCAGA
TTCTGACTGACTGGTATAAAATTTACCATGGTAAAAGTGCTGAATTATTT
TAAC Coding sequence (CDS) from alignment at sc0000225:188973..191126+ >TCONS_00016043 ID=TCONS_00016043|Name=TCONS_00016043|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at sc0000225:188973..191126+ (Clytia hemisphaerica)
ATGGCTGATAAACTGAAAGTCATCAGTGCGGTGGGTACAGCCGCCAAAGC
CATAGTTGAGAATGGTGGACCTGGTTTAATGCAAGTGGTTGGTGATGGAT
TTGAAATGATCACCATACCTGATCCTACAGTTTTGATTGCGTTGTATGCA
ACTGAATTCACACTGGATGTTACGCACAGTATCTGGCAATGGTACGGTGG
TGTGATAGATGGTCGACGTTGTGCAGCAAATATCCAATCAGCGACATTCA
GATGTGCTGGTGGTCTTTTTGGTGGAATGGCGGGAATGACAGCTTTCGGA
ATGTTCCTTGGACCATCAACTGTTGTATTAGTTGcTGGTGGCTTTGTTGG
AGCTTGTTATGGTGCATACAAAGGACTACAATTCGCTGATATTCTTAACC
GTTTGTTCTTCGGTCTTCCGACCAATGTTGTTTTACAAAAAGCGTACGAT
ACTTTCGGTGTTTCCTGCAACGCCACAATCCCTGAAGTGAACAAAGCTTA
CAGAAATTATTGCCGGAAACATCATCCCGACAAAGGCGGTGATAATGATG
AATTTGTTAAAGGACAATTTTATATGGAAATCATTAGAGCTGATCGAATG
GGCAAAGAACTGGGTTACAAACACTCATAGATGGCTGATAAACTGAAAGT
CATCAGTGCGGTGGGTACAGCCGCCAAAGCCATAGTTGAGAATGGTGGAC
CTGGTTTAATGCAAGTGGTTGGTGATGGATTTGAAATGATCACCATACCT
GATCCTACAGTTTTGATTGCGTTGTATGCAACTGAATTCACACTGGATGT
TACGCACAGTATCTGGCAATGGTACGGTGGTGTGATAGATGGTCGACGTT
GTGCAGCAAATATCCAATCAGCGACATTCAGATGTGCTGGTGGTCTTTTT
GGTGGAATGGCGGGAATGACAGCTTTCGGAATGTTCCTTGGACCATCAAC
TGTTGTATTAGTTGcTGGTGGCTTTGTTGGAGCTTGTTATGGTGCATACA
AAGGACTACAATTCGCTGATATTCTTAACCGTTTGTTCTTCGGTCTTCCG
ACCAATGTTGTTTTACAAAAAGCGTACGATACTTTCGGTGTTTCCTGCAA
CGCCACAATCCCTGAAGTGAACAAAGCTTACAGAAATTATTGCCGGAAAC
ATCATCCCGACAAAGGCGGTGATAATGATGAATTTGTTAAAGGACAATTT
TATATGGAAATCATTAGAGCTGATCGAATGGGCAAAGAACTGGGTTACAA
ACACTCATAGATGGCTGATAAACTGAAAGTCATCAGTGCGGTGGGTACAG
CCGCCAAAGCCATAGTTGAGAATGGTGGACCTGGTTTAATGCAAGTGGTT
GGTGATGGATTTGAAATGATCACCATACCTGATCCTACAGTTTTGATTGC
GTTGTATGCAACTGAATTCACACTGGATGTTACGCACAGTATCTGGCAAT
GGTACGGTGGTGTGATAGATGGTCGACGTTGTGCAGCAAATATCCAATCA
GCGACATTCAGATGTGCTGGTGGTCTTTTTGGTGGAATGGCGGGAATGAC
AGCTTTCGGAATGTTCCTTGGACCATCAACTGTTGTATTAGTTGcTGGTG
GCTTTGTTGGAGCTTGTTATGGTGCATACAAAGGACTACAATTCGCTGAT
ATTCTTAACCGTTTGTTCTTCGGTCTTCCGACCAATGTTGTTTTACAAAA
AGCGTACGATACTTTCGGTGTTTCCTGCAACGCCACAATCCCTGAAGTGA
ACAAAGCTTACAGAAATTATTGCCGGAAACATCATCCCGACAAAGGCGGT
GATAATGATGAATTTGTTAAAGGACAATTTTATATGGAAATCATTAGAGC
TGATCGAATGGGCAAAGAACTGGGTTACAAACACTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016043-exon-sc0000225-1491911889:188973..189275 | TCONS_00016043-exon-sc0000225-1491911889:188973..189275 | Clytia hemisphaerica | exon |
| TCONS_00016043-exon-sc0000225-1510915933:188973..189275 | TCONS_00016043-exon-sc0000225-1510915933:188973..189275 | Clytia hemisphaerica | exon |
| TCONS_00016043-exon-sc0000225-1575043694:188973..189275 | TCONS_00016043-exon-sc0000225-1575043694:188973..189275 | Clytia hemisphaerica | exon |
| TCONS_00016043-exon-sc0000225-1491911889:190128..190290 | TCONS_00016043-exon-sc0000225-1491911889:190128..190290 | Clytia hemisphaerica | exon |
| TCONS_00016043-exon-sc0000225-1510915933:190128..190290 | TCONS_00016043-exon-sc0000225-1510915933:190128..190290 | Clytia hemisphaerica | exon |
| TCONS_00016043-exon-sc0000225-1575043694:190128..190290 | TCONS_00016043-exon-sc0000225-1575043694:190128..190290 | Clytia hemisphaerica | exon |
| TCONS_00016043-exon-sc0000225-1491911889:190572..191126 | TCONS_00016043-exon-sc0000225-1491911889:190572..191126 | Clytia hemisphaerica | exon |
| TCONS_00016043-exon-sc0000225-1510915933:190572..191126 | TCONS_00016043-exon-sc0000225-1510915933:190572..191126 | Clytia hemisphaerica | exon |
| TCONS_00016043-exon-sc0000225-1575043694:190572..191126 | TCONS_00016043-exon-sc0000225-1575043694:190572..191126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000225 | supercontig | sc0000225:188973..191126 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001623 | DnaJ_domain |
Blast
The following BLAST results are available for this feature:
|
