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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015818 ID=TCONS_00015818|Name=TCONS_00015818|organism=Clytia hemisphaerica|type=transcript|length=1783bp
GGAGACTTTAGTTGACTTTGCTATTTAACCCTTAGACCACGAGGGACGCG
TATATGCGTCAtgtgaaaaagggacctttTATGGCTCGCACATTCCTGGC
ACCCATTTTGCGACAACCTTGTAAAAAGCATGCGTTCAAAGCGTGATACA
TTCATCACATCAATTTATTCAGTTTTTATCATGAGTAGATTCACGTGCAC
ACGCTTGAAAATTGCTAAAGCTAGCTGGTTTGATATTGAAATTCGATCAG
CCACTTGTACTGTAGTATTTTTTGTTGTGACAAACTTGTTATTTGCAACG
TTCCTAAATGACCCTCTATTGAATTCGTTTTAGCAGTTCAACGTCTAACG
TAGGAGATTTTTCTTTTGCAGAAGTATTTTGATAGTGTCTTTTCAAAGGG
CTTTGTAACCTACAATAAATTAAgAGTCGAATTTTCTAAAGAGCACAATG
TCGAATTGTAGCTTCAATGTGTACTTTAAGTATACTGCTTGTCCACTCCT
agttgtgacgtcatttgccTCACTTATTCAAAACCTCTTATTTTGTGGAA
TTGTTTGGTTCGACAAGGCACTACACAGACGCTCAATGATCTTGATTGTG
AACTTATCAGTCTCCGGCATCATTTACTCGTTGACTGTACCATTCTTCGA
GTTTGTACACGTCTACTTTTATCCAGTATGGCCGTTTGGGAAACTGGGTA
CTAATTTACAAAACACCGCGTGGATTTTCTCGCTTATACTCACTTTTATG
ACCGTGACGTGCATAACAACTGAACGTTACTTAGTAACCGTAAGAACTGG
CTTCTATCGTGCCTATGTGACGTCATCATCGCTCGGCTGGATAGttttta
ttatttggatatATTCACTTGCTTGGACTATTATTATTTCGCTCAATTTC
TCACCTGCGTTCGAATATCGTTATGTCTGGAACGTACCGCGAACACCTTA
TTATATCTTCCTCGGAATACATCTAATTCTTCCTCTCGCTATtattgcag
tcttgtaccaacGCATTTTAAACTACACAAGAAAGTCAAGGAGAGATGTG
AGCCTTATTGGGAATCAAACTATTTCGACAGAAGTCAGGCTAACTAAAAC
GGTGGGGCTAGTCATTGGTTGCCTTTATGGGATTTGGATCCCAGTGGTAT
TGATAGAGGCAGTCTACAGTTTTGACTTTTGTGACTGCGTTATAAAACAA
ATCGATACTGTTGGAGTTATTTTGACCGCTATTGATGGTTTTCTGGTTCC
CATTTTATACTTTTATCGCATTCATGATgttaagaaaagtttgaaacata
tgaaaatgaaaatgctggGTGGTGGATGTTGTTGTTTAAAGAATGTTCCG
AATAAAAACAAAGTGGACAAGGTGAAATACACTTCGAAAACAGTAAAgca
tttaaaataaataactGTGAGACAAAAGACACAAAAATGTAATGCAATAA
ggagttgaaaattttttgttcgcCATAGCTCTTCATAaaattcatgacgt
aatattttctaTGGAAATACTCAAAATAGCCCGGGCGTTTGCCGGTAGTT
TTATTATTTAAGTTCAAAATTACTAAACAGTCAGTCTTTTTGTAAGTAAG
GGCGGAAAGAAACTTATTTGCAATTATTATAACAAAAGATTCTTCAGTAA
ATAAGCTTCCTTTAGTAATCTTGTATGTACATTTTAAAATCCAAAGAAAA
GTATCATTCTTgtctactttaatcgtagaaattttagcgagactaatttt
agcgtatattagcgagtcagaaaaatgttgatt Run BLAST on NCBI protein sequence of TCONS_00015818-protein >TCONS_00015818-protein ID=TCONS_00015818-protein|Name=TCONS_00015818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MSNCSFNVYFKYTACPLLVVTSFASLIQNLLFCGIVWFDKALHRRSMILI
VNLSVSGIIYSLTVPFFEFVHVYFYPVWPFGKLGTNLQNTAWIFSLILTF
MTVTCITTERYLVTVRTGFYRAYVTSSSLGWIVFIIWIYSLAWTIIISLN
FSPAFEYRYVWNVPRTPYYIFLGIHLILPLAIIAVLYQRILNYTRKSRRD
VSLIGNQTISTEVRLTKTVGLVIGCLYGIWIPVVLIEAVYSFDFCDCVIK
QIDTVGVILTAIDGFLVPILYFYRIHDVKKSLKHMKMKMLGGGCCCLKNV
PNKNKVDKVKYTSKTVKHLK Run BLAST on NCBI transcript from alignment at sc0000217:414727..417407+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015818 ID=TCONS_00015818|Name=TCONS_00015818|organism=Clytia hemisphaerica|type=transcript|length=2681bp|location=Sequence derived from alignment at sc0000217:414727..417407+ (Clytia hemisphaerica)
GGAGACTTTAGTTGACTTTGCTATTTAACCCTTAGACCACGAGGGACGCG
TATATGCGTCAtgtgaaaaagggacctttTATGGCTCGCACATTCCTGGC
ACCCATTTTGCGACAACCTTGTAAAAAGCATGCGTTCAAAGCGTGATACA
TTCATCACATCAATTTATTCAGTTTTTATCATGAGTAGATTCACGTGCAC
ACGCTTGAAAATTGCTAAAGCTAGCTGGTTTGATATTGAAATTCGATCAG
CCACTTGTACTGTAGTATTTTTTGTTGTGACAAACTTGTTATTTGCAACG
TTCCTAAATGACCCTCTATTGAATTCGTTTTAGCAGTTCAACGTCTAACG
TAGGAGATTTTTCTTTTGCAGAAGTATTTTGATAGTGTCTTTTCAAAGGG
CTTTGTAACCTACAATAAATTAAGTAAGTCgtattcacaattttttttcc
aacagtGTCCAAGGGAGTGTTGAGCACTCGATCTGGAAACCAACATGGAA
CTCTGAAAGCGAATTTTGGCACTTTTCACGTGGAAGTCAATGGTCCCTTA
ATGGTTATAAAGAATTCTTTCTTGggtgattcgcgaaagtttatgctcgg
gGGAATTCTTAATAAGTAagaaatctgtgaaatttctAACCTAACACAAA
ATGTAagatttaaggcattttttagcattttaaagcCTCATAAGTCGGAA
GACAAAAGTTTTAATCCAACCTACGAAGTGATTGCCCTCGCTATATTTTG
TCTTCATTCGCGAATGAAGTACCATTAGGTCACTTGGTACTACCAGCATT
CCTTGCCTTCCTTCTTTGTAACTATAAATCAAATTCATATTTTTTANCCA
TCCATCTTCGTCTTTTAGTGACGACCACGGAATGATAAAcgtaaaaatat
tctttaataTATACTGTAGGATATACTGTTAAATTTCACAAtggttttgg
aaaaattttaaagatatttgattgttttcaccTAACAAAATTCGTTATAT
cttatattcaataaattcaaatagaACATAAATGTTCACACTCGCTTGAA
CTTTTGGAGAGTGAAGGAAGGTTATCTTTGCTCCATGGAGTTCGACTGCC
CCGGAGGCACAAGAGAACTGAACTCAAAAGAGCAAAGACCACCTTTCTTC
TAACCCAAGTTGTTGTGACTGACAAAGGTTCATCTCGTTTTTCGGATAAA
AGTTCACTCAGTCTTTTATAGAAGCACTTAGTCTCTCTTCCCATGCCGCC
CATAGCGGTAAAAACAATAGGAGTGATTGAGCCGTGCTCAATttgtaaat
tcatatttttttgtgttttaggAGTCGAATTTTCTAAAGAGCACAATGTC
GAATTGTAGCTTCAATGTGTACTTTAAGTATACTGCTTGTCCACTCCTag
ttgtgacgtcatttgccTCACTTATTCAAAACCTCTTATTTTGTGGAATT
GTTTGGTTCGACAAGGCACTACACAGACGCTCAATGATCTTGATTGTGAA
CTTATCAGTCTCCGGCATCATTTACTCGTTGACTGTACCATTCTTCGAGT
TTGTACACGTCTACTTTTATCCAGTATGGCCGTTTGGGAAACTGGGTACT
AATTTACAAAACACCGCGTGGATTTTCTCGCTTATACTCACTTTTATGAC
CGTGACGTGCATAACAACTGAACGTTACTTAGTAACCGTAAGAACTGGCT
TCTATCGTGCCTATGTGACGTCATCATCGCTCGGCTGGATAGtttttatt
atttggatatATTCACTTGCTTGGACTATTATTATTTCGCTCAATTTCTC
ACCTGCGTTCGAATATCGTTATGTCTGGAACGTACCGCGAACACCTTATT
ATATCTTCCTCGGAATACATCTAATTCTTCCTCTCGCTATtattgcagtc
ttgtaccaacGCATTTTAAACTACACAAGAAAGTCAAGGAGAGATGTGAG
CCTTATTGGGAATCAAACTATTTCGACAGAAGTCAGGCTAACTAAAACGG
TGGGGCTAGTCATTGGTTGCCTTTATGGGATTTGGATCCCAGTGGTATTG
ATAGAGGCAGTCTACAGTTTTGACTTTTGTGACTGCGTTATAAAACAAAT
CGATACTGTTGGAGTTATTTTGACCGCTATTGATGGTTTTCTGGTTCCCA
TTTTATACTTTTATCGCATTCATGATgttaagaaaagtttgaaacatatg
aaaatgaaaatgctggGTGGTGGATGTTGTTGTTTAAAGAATGTTCCGAA
TAAAAACAAAGTGGACAAGGTGAAATACACTTCGAAAACAGTAAAgcatt
taaaataaataactGTGAGACAAAAGACACAAAAATGTAATGCAATAAgg
agttgaaaattttttgttcgcCATAGCTCTTCATAaaattcatgacgtaa
tattttctaTGGAAATACTCAAAATAGCCCGGGCGTTTGCCGGTAGTTTT
ATTATTTAAGTTCAAAATTACTAAACAGTCAGTCTTTTTGTAAGTAAGGG
CGGAAAGAAACTTATTTGCAATTATTATAACAAAAGATTCTTCAGTAAAT
AAGCTTCCTTTAGTAATCTTGTATGTACATTTTAAAATCCAAAGAAAAGT
ATCATTCTTgtctactttaatcgtagaaattttagcgagactaattttag
cgtatattagcgagtcagaaaaatgttgatt Coding sequence (CDS) from alignment at sc0000217:414727..417407+ >TCONS_00015818 ID=TCONS_00015818|Name=TCONS_00015818|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000217:414727..417407+ (Clytia hemisphaerica)
ATGTCGAATTGTAGCTTCAATGTGTACTTTAAGTATACTGCTTGTCCACT
CCTagttgtgacgtcatttgccTCACTTATTCAAAACCTCTTATTTTGTG
GAATTGTTTGGTTCGACAAGGCACTACACAGACGCTCAATGATCTTGATT
GTGAACTTATCAGTCTCCGGCATCATTTACTCGTTGACTGTACCATTCTT
CGAGTTTGTACACGTCTACTTTTATCCAGTATGGCCGTTTGGGAAACTGG
GTACTAATTTACAAAACACCGCGTGGATTTTCTCGCTTATACTCACTTTT
ATGACCGTGACGTGCATAACAACTGAACGTTACTTAGTAACCGTAAGAAC
TGGCTTCTATCGTGCCTATGTGACGTCATCATCGCTCGGCTGGATAGttt
ttattatttggatatATTCACTTGCTTGGACTATTATTATTTCGCTCAAT
TTCTCACCTGCGTTCGAATATCGTTATGTCTGGAACGTACCGCGAACACC
TTATTATATCTTCCTCGGAATACATCTAATTCTTCCTCTCGCTATtattg
cagtcttgtaccaacGCATTTTAAACTACACAAGAAAGTCAAGGAGAGAT
GTGAGCCTTATTGGGAATCAAACTATTTCGACAGAAGTCAGGCTAACTAA
AACGGTGGGGCTAGTCATTGGTTGCCTTTATGGGATTTGGATCCCAGTGG
TATTGATAGAGGCAGTCTACAGTTTTGACTTTTGTGACTGCGTTATAAAA
CAAATCGATACTGTTGGAGTTATTTTGACCGCTATTGATGGTTTTCTGGT
TCCCATTTTATACTTTTATCGCATTCATGATgttaagaaaagtttgaaac
atatgaaaatgaaaatgctggGTGGTGGATGTTGTTGTTTAAAGAATGTT
CCGAATAAAAACAAAGTGGACAAGGTGAAATACACTTCGAAAACAGTAAA
gcatttaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015818-exon-sc0000217-1491911889:414727..415149 | TCONS_00015818-exon-sc0000217-1491911889:414727..415149 | Clytia hemisphaerica | exon |
| TCONS_00015818-exon-sc0000217-1510915933:414727..415149 | TCONS_00015818-exon-sc0000217-1510915933:414727..415149 | Clytia hemisphaerica | exon |
| TCONS_00015818-exon-sc0000217-1575043694:414727..415149 | TCONS_00015818-exon-sc0000217-1575043694:414727..415149 | Clytia hemisphaerica | exon |
| TCONS_00015818-exon-sc0000217-1491911889:416048..417407 | TCONS_00015818-exon-sc0000217-1491911889:416048..417407 | Clytia hemisphaerica | exon |
| TCONS_00015818-exon-sc0000217-1510915933:416048..417407 | TCONS_00015818-exon-sc0000217-1510915933:416048..417407 | Clytia hemisphaerica | exon |
| TCONS_00015818-exon-sc0000217-1575043694:416048..417407 | TCONS_00015818-exon-sc0000217-1575043694:416048..417407 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000217 | supercontig | sc0000217:414727..417407 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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