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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000256_pilon:243296..247512+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041204 ID=XLOC_041204|Name=XLOC_041204|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4217bp|location=Sequence derived from alignment at sc0000256_pilon:243296..247512+ (Clytia hemisphaerica_ch_hm2_pilon)
TTCTATCAAACTCAAaatcaacaatatcttcttaGCAGATATGGATATTT
TGTTCATCTCACTAAAATCAAGCCTAAACAAATTGGCTGCAGAACTATCg
ctgtttcattgtttttaatttgcGTGCGAACCAATGTGGATTATCAAGTC
GTGGGGACAATACTTTGCAATCGATACAATGATCATACGAAAGTTTTGAG
GGAAGCATTGGCAGAACTCAAAGTAATCAACGAGCTTTGGaaaccaaaat
atttcatcattGATCCATCGAAATCAATGATATCTGTTGTTGAAGATATC
TTTCCaggtatttcaaaaatgagtatTTCAAAGGTCCTGCGTTAGTTTCG
CCTTATTAGTTCTCAGTTATTAGTTATCgctttttagattttatttcaaa
gtcatttgaaatcatttgaaGACTTTTGTTTCTTGCACATATTTGTTACA
TTGTTATAAAGATATTAAATTTCTTGTTTATACAGATGTGGATTACTATT
TCAACAAGGATGCTGGCATACATGAATGGGAAGAATACTTCGCAGATCCG
TTAAACGGTGTTAAAGATTATAGTGAGAAACTGCTCAACGATCTGAAACT
CTTTCAGATGTCTCAATCAGTCGAAGAAATTAACAATTTGATGAAGAACG
TCCAAAGATGTCCTGTATGGAATAAAGATGTCGATGTAAAGTTCAGAAAC
AAGTGGTTTTCTCTTTCAAAGGTTGAAATATTACTTTATTGCCAAGTTTG
ATAGTGAAAGCACATTCTTAACCCTATCCCAAATGCTGTGACTTTTTCAT
GATGTAAAGAGgaaagccaaaataaaaaaaatgaataatattTATTTCAG
TGATTAACAAGTTAATATGCTTCTAACTTTGATATTCAAGTTCAAAGCCA
AGTCAACATTGGGGTATTTTGGGGTATTAGTTTTGTTTCATTGCTTATTT
GTATTCTTCTTGAAATAGAGATGGACAAAACACTCCCTACCACAACCCAT
TTCATTGCTGCTCAAAGAAGAATGGTTGGGTGAAATGTTGGAAACTTACG
AAGATGCTGTTCTTTTGTCAACGTCGAGAACGTCAGATGGAGGAATTTAT
AAATTGATTGAAAGACTTACTTCAACACCAGATACTCAATATGAAAGGTT
TGATATTCTTATTTTGGGATGAGATTACTCACCAATTAGGCCCATTTCCG
TCGGCCTTTGTTGGTGTTTATGGCCTGTGGGATATTAAATCCTTCGAGTA
TTCGGtcttaaataaaatatattgatgAACTGTAACTTCACTTTGTTGAT
TGTAAACAAGTTACCAATTACAATgaggtgaatacagtcgctctcatatt
gttttctgaccagccaccagaaccgttggaaaaccaacggatccggcgag
actcgaactcacaaccatgccattcgcgggcatttgctctaccattgagc
tacgggtccatgtggaacccgATGACTCAATTGCCACTGGGTAAagctgg
aagtgaattcttgtctactgactggtCAGAGACGATGAATTGGGAGAAAT
ACATCTCCACATTGCTAGTGTGTTGGAATCCACCAACTACTACACTAACG
GAAGGTTTGGGCATGCAACCATAGATATTAATCATGAATAttgcccttat
gtattacaTAAGTTACCAAGTTACCAATTAATTGTGAAAACTGATAGACT
TTTTTAAATCAGGAAGGATctaaaataaccatttttgagtCAAAGATTCT
TAATGTATAAATCAGTATAAATCAATCAACATTTTCTCAATCTTGCTACT
CGTTTGATTCGCTTATCAGttgctacttccaaaggctctgaTTCGCTTAC
CAGTTGTTATTTACTTATCACAATCTTTTTTCTCATTATAATAGTTATTG
CACCAAGAACGACAAACATCACATTGATTGCCAGTCATCTCTGAAAATAG
TAAGAAAGGATTCAACAAACTTAGCTGGTATCCCTTTATTTATGATGTCA
CATATGAATGGTATTATCAACTCTGTTAATAAACTTAAAGCAACAGTCAA
GAAGCTTTCTTTCGGAAAATATGAAGTTCATACCGTAGATAACCCTAAAC
AATATCAAGTTTTATTtggaaatcaaaagactttccCATCATGCACTTGT
GTTGAATGGAACAACAATGCATTGCCTTGTCAACATATCATACATGTGTT
TAAAGAATGTGATTTGAGCTTTAGCAATTTAAGTTTATTGTACCGATTGA
ATCCTTGTTTCAAAATGGACGACTCCTGCATCAATGTTTTTGGTTCTTca
attgaaaagaaagatgTGGTAACACAATCTGATATTGACCCACTTATCAA
GACAAGAACAGTTGCAGTTAACACCAAAATGATATACCCTCTGATAGCGA
CAAAAAAGAAGAGCGATTCCcaagaaaaatcatcaaataatAAGATGAAG
AATAAAACATCtcttgatgacatcatcattgGAGATCTTCTGAGCAAGAT
GGTCGACAAAGTCGTGTCTCATGAATCAAGCTGCAAAAAATCTTCGAAAC
AAAAGAAACCCTCCTCGAACTCTATCAGAGGACGCCCAAGAAAGTATGGG
AAATCTCGTACTGAAATAGTTATTGAAAACCTTCTGGACAAAATGGTTGA
CAAAGTCGTTGCAGAAGAATCAGGAAGTGAATCTAAAAAACCTTCGAAAC
GAAAGAAACCTTCCTCTACCTCAATTTCCAAGAAGGAGAAAGTTAAAAAA
GCAAGGAATGCCAAAGTCAAGCCAACTGGTGATCGTGAAGAAACTCAATC
AAATGAAATGGTAGCTCGAATTAAACGCGAAGTTAGAACTGGATTAAAAA
CGATGAGCATTCAAGACGCTAGCCCAAAAACTATCGTACTAGTAAAATTA
TCTACGGTAGAGAAGGTTCATCCGCCCACAATGCAGAAAGTTCAACTGCC
CAATGTTCAGAGAGTTCATCCGCCCACAGTGCAGAAAGTTCAACCGCCCA
CTGTTCAGAAAGCTCAACCGCCCACGGTTCAGAGAGTTCATCTGCCCACG
GTGCAGAAAGCTCAACCGCCCACTGTTCAGAGAGTTCATCTGCCCACGGT
GCAGAAAATTCAACCGCCTACCGTACAGAGAATTCGACCAACCACACAGT
CTCAAGGAACAACCGTTCAAATACATCAAGGCAATAATCAACCGAATGGA
ATGGAGCAGCTTGATGGAACGATCATTTCCGACCAACgttcaaatctttc
aaaacaacaatcttTCCAGCAACTGTCACCAGCCAGACAGTCAAATCAAT
CCAACCGAATTCAACATCGTGACAAACCAGCTCTCAACGGTCCTTCCAAT
ttaaagttttcgaaaaaaacgTCTTCTTCAAATGCTATTCGAGTTAATAA
GGGTCCATACCCAAATCTAAAGGAAATGCAACAGAATGCAAAAAGACAAT
CAATGAAAGAGCAAAGTCTAAACGCATCAAACATTAAATCAAACCTGATG
AACATACAAAATCTGTTATTCCAACTCAATCCAACAGGCAATATTGTACT
TTCATCTACTGAGCAAAATGTTTCTCAAAATAAACAGTCCATTGTGACTG
TTGCCAGTTCTAATTCGGTAGGTCTTCAAGCAGATATTGAAACTGCTGTC
ATCAGTCaaaaaaaGGCACAAGTTAATGCTTTCTTAAATCAGACACCAAA
TCCAAATTTTAACggacaaaaacaaaatgaacgCAACCACCTTGCTGGAT
ATACTAATGAGCCTATGGTTCAAATCAATACCCTGAATaaagaaagaagg
cccaaaagaaaagacaaaagaaaacaaactcaatcgaatttgaagaaacg
aaaaTCTTGCGAATTTAAACAACCGGAAAAGGTgaaaattttgccaagaa
aACATCTTAGACCAAAAATCTCGGACATTTCGACAGAGTATCAGTACCCT
GCGTTTGTCGGTCAAAAATCTGCCAATTCAAATCTTAATCAGTTGCCAAC
TTCTAAAGACGGGGAATCGATACAAACCAAAATCAAGATTGAACCAGATG
ATTTTCCTAATATCGATATTGACATTGAATCTGTTCTGAATTCGGGGGAA
AATGTAAACATGATGTATAACAAACATGATCCCGTAGAAGAATCGTtgga
aaagatttcaaaactaAAGAAACAGTTAGATGCTAGTCTACGAAATGAAG
CTTTTGATGCGTTATGA Coding sequence (CDS) from alignment at sc0000256_pilon:243296..247512+ >XLOC_041204 ID=XLOC_041204|Name=XLOC_041204|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6090bp|location=Sequence derived from alignment at sc0000256_pilon:243296..247512+ (Clytia hemisphaerica_ch_hm2_pilon)
TTCTATCAAACTCAAaatcaacaatatcttcttaGCAGATATGGATATTT
TGTTCATCTCACTAAAATCAAGCCTAAACAAATTGGCTGCAGAACTATCg
ctgtttcattgtttttaatttgcGTGCGAACCAATGTGGATTATCAAGTC
GTGGGGACAATACTTTGCAATCGATACAATGATCATACGAAAGTTTTGAG
GGAAGCATTGGCAGAACTCAAAGTAATCAACGAGCTTTGGaaaccaaaat
atttcatcattGATCCATCGAAATCAATGATATCTGTTGTTGAAGATATC
TTTCCagTTCTATCAAACTCAAaatcaacaatatcttcttaGCAGATATG
GATATTTTGTTCATCTCACTAAAATCAAGCCTAAACAAATTGGCTGCAGA
ACTATCgctgtttcattgtttttaatttgcGTGCGAACCAATGTGGATTA
TCAAGTCGTGGGGACAATACTTTGCAATCGATACAATGATCATACGAAAG
TTTTGAGGGAAGCATTGGCAGAACTCAAAGTAATCAACGAGCTTTGGaaa
ccaaaatatttcatcattGATCCATCGAAATCAATGATATCTGTTGTTGA
AGATATCTTTCCagATGTGGATTACTATTTCAACAAGGATGCTGGCATAC
ATGAATGGGAAGAATACTTCGCAGATCCGTTAAACGGTGTTAAAGATTAT
AGTGAGAAACTGCTCAACGATCTGAAACTCTTTCAGATGTCTCAATCAGT
CGAAGAAATTAACAATTTGATGAAGAACGTCCAAAGATGTCCTGTATGGA
ATAAAGATGTCGATGTAAAGTTCAGAAACAAGTGGTTTTCTCTTTCAAAG
ATGTGGATTACTATTTCAACAAGGATGCTGGCATACATGAATGGGAAGAA
TACTTCGCAGATCCGTTAAACGGTGTTAAAGATTATAGTGAGAAACTGCT
CAACGATCTGAAACTCTTTCAGATGTCTCAATCAGTCGAAGAAATTAACA
ATTTGATGAAGAACGTCCAAAGATGTCCTGTATGGAATAAAGATGTCGAT
GTAAAGTTCAGAAACAAGTGGTTTTCTCTTTCAAAGAGATGGACAAAACA
CTCCCTACCACAACCCATTTCATTGCTGCTCAAAGAAGAATGGTTGGGTG
AAATGTTGGAAACTTACGAAGATGCTGTTCTTTTGTCAACGTCGAGAACG
TCAGATGGAGGAATTTATAAATTGATTGAAAGACTTACTTCAACACCAGA
TACTCAATATGAAAGAGATGGACAAAACACTCCCTACCACAACCCATTTC
ATTGCTGCTCAAAGAAGAATGGTTGGGTGAAATGTTGGAAACTTACGAAG
ATGCTGTTCTTTTGTCAACGTCGAGAACGTCAGATGGAGGAATTTATAAA
TTGATTGAAAGACTTACTTCAACACCAGATACTCAATATGAAAGTTATTG
CACCAAGAACGACAAACATCACATTGATTGCCAGTCATCTCTGAAAATAG
TAAGAAAGGATTCAACAAACTTAGCTGGTATCCCTTTATTTATGATGTCA
CATATGAATGGTATTATCAACTCTGTTAATAAACTTAAAGCAACAGTCAA
GAAGCTTTCTTTCGGAAAATATGAAGTTCATACCGTAGATAACCCTAAAC
AATATCAAGTTTTATTtggaaatcaaaagactttccCATCATGCACTTGT
GTTGAATGGAACAACAATGCATTGCCTTGTCAACATATCATACATGTGTT
TAAAGAATGTGATTTGAGCTTTAGCAATTTAAGTTTATTGTACCGATTGA
ATCCTTGTTTCAAAATGGACGACTCCTGCATCAATGTTTTTGGTTCTTca
attgaaaagaaagatgTGGTAACACAATCTGATATTGACCCACTTATCAA
GACAAGAACAGTTGCAGTTAACACCAAAATGATATACCCTCTGATAGCGA
CAAAAAAGAAGAGCGATTCCcaagaaaaatcatcaaataatAAGATGAAG
AATAAAACATCtcttgatgacatcatcattgGAGATCTTCTGAGCAAGAT
GGTCGACAAAGTCGTGTCTCATGAATCAAGCTGCAAAAAATCTTCGAAAC
AAAAGAAACCCTCCTCGAACTCTATCAGAGGACGCCCAAGAAAGTATGGG
AAATCTCGTACTGAAATAGTTATTGAAAACCTTCTGGACAAAATGGTTGA
CAAAGTCGTTGCAGAAGAATCAGGAAGTGAATCTAAAAAACCTTCGAAAC
GAAAGAAACCTTCCTCTACCTCAATTTCCAAGAAGGAGAAAGTTAAAAAA
GCAAGGAATGCCAAAGTCAAGCCAACTGGTGATCGTGAAGAAACTCAATC
AAATGAAATGGTAGCTCGAATTAAACGCGAAGTTAGAACTGGATTAAAAA
CGATGAGCATTCAAGACGCTAGCCCAAAAACTATCGTACTAGTAAAATTA
TCTACGGTAGAGAAGGTTCATCCGCCCACAATGCAGAAAGTTCAACTGCC
CAATGTTCAGAGAGTTCATCCGCCCACAGTGCAGAAAGTTCAACCGCCCA
CTGTTCAGAAAGCTCAACCGCCCACGGTTCAGAGAGTTCATCTGCCCACG
GTGCAGAAAGCTCAACCGCCCACTGTTCAGAGAGTTCATCTGCCCACGGT
GCAGAAAATTCAACCGCCTACCGTACAGAGAATTCGACCAACCACACAGT
CTCAAGGAACAACCGTTCAAATACATCAAGGCAATAATCAACCGAATGGA
ATGGAGCAGCTTGATGGAACGATCATTTCCGACCAACgttcaaatctttc
aaaacaacaatcttTCCAGCAACTGTCACCAGCCAGACAGTCAAATCAAT
CCAACCGAATTCAACATCGTGACAAACCAGCTCTCAACGGTCCTTCCAAT
ttaaagttttcgaaaaaaacgTCTTCTTCAAATGCTATTCGAGTTAATAA
GGGTCCATACCCAAATCTAAAGGAAATGCAACAGAATGCAAAAAGACAAT
CAATGAAAGAGCAAAGTCTAAACGCATCAAACATTAAATCAAACCTGATG
AACATACAAAATCTGTTATTCCAACTCAATCCAACAGGCAATATTGTACT
TTCATCTACTGAGCAAAATGTTTCTCAAAATAAACAGTCCATTGTGACTG
TTGCCAGTTCTAATTCGGTAGGTCTTCAAGCAGATATTGAAACTGCTGTC
ATCAGTCaaaaaaaGGCACAAGTTAATGCTTTCTTAAATCAGACACCAAA
TCCAAATTTTAACggacaaaaacaaaatgaacgCAACCACCTTGCTGGAT
ATACTAATGAGCCTATGGTTCAAATCAATACCCTGAATaaagaaagaagg
cccaaaagaaaagacaaaagaaaacaaactcaatcgaatttgaagaaacg
aaaaTCTTGCGAATTTAAACAACCGGAAAAGGTgaaaattttgccaagaa
aACATCTTAGACCAAAAATCTCGGACATTTCGACAGAGTATCAGTACCCT
GCGTTTGTCGGTCAAAAATCTGCCAATTCAAATCTTAATCAGTTGCCAAC
TTCTAAAGACGGGGAATCGATACAAACCAAAATCAAGATTGAACCAGATG
ATTTTCCTAATATCGATATTGACATTGAATCTGTTCTGAATTCGGGGGAA
AATGTAAACATGATGTATAACAAACATGATCCCGTAGAAGAATCGTtgga
aaagatttcaaaactaAAGAAACAGTTAGATGCTAGTCTACGAAATGAAG
CTTTTGATGCGTTATGATTATTGCACCAAGAACGACAAACATCACATTGA
TTGCCAGTCATCTCTGAAAATAGTAAGAAAGGATTCAACAAACTTAGCTG
GTATCCCTTTATTTATGATGTCACATATGAATGGTATTATCAACTCTGTT
AATAAACTTAAAGCAACAGTCAAGAAGCTTTCTTTCGGAAAATATGAAGT
TCATACCGTAGATAACCCTAAACAATATCAAGTTTTATTtggaaatcaaa
agactttccCATCATGCACTTGTGTTGAATGGAACAACAATGCATTGCCT
TGTCAACATATCATACATGTGTTTAAAGAATGTGATTTGAGCTTTAGCAA
TTTAAGTTTATTGTACCGATTGAATCCTTGTTTCAAAATGGACGACTCCT
GCATCAATGTTTTTGGTTCTTcaattgaaaagaaagatgTGGTAACACAA
TCTGATATTGACCCACTTATCAAGACAAGAACAGTTGCAGTTAACACCAA
AATGATATACCCTCTGATAGCGACAAAAAAGAAGAGCGATTCCcaagaaa
aatcatcaaataatAAGATGAAGAATAAAACATCtcttgatgacatcatc
attgGAGATCTTCTGAGCAAGATGGTCGACAAAGTCGTGTCTCATGAATC
AAGCTGCAAAAAATCTTCGAAACAAAAGAAACCCTCCTCGAACTCTATCA
GAGGACGCCCAAGAAAGTATGGGAAATCTCGTACTGAAATAGTTATTGAA
AACCTTCTGGACAAAATGGTTGACAAAGTCGTTGCAGAAGAATCAGGAAG
TGAATCTAAAAAACCTTCGAAACGAAAGAAACCTTCCTCTACCTCAATTT
CCAAGAAGGAGAAAGTTAAAAAAGCAAGGAATGCCAAAGTCAAGCCAACT
GGTGATCGTGAAGAAACTCAATCAAATGAAATGGTAGCTCGAATTAAACG
CGAAGTTAGAACTGGATTAAAAACGATGAGCATTCAAGACGCTAGCCCAA
AAACTATCGTACTAGTAAAATTATCTACGGTAGAGAAGGTTCATCCGCCC
ACAATGCAGAAAGTTCAACTGCCCAATGTTCAGAGAGTTCATCCGCCCAC
AGTGCAGAAAGTTCAACCGCCCACTGTTCAGAAAGCTCAACCGCCCACGG
TTCAGAGAGTTCATCTGCCCACGGTGCAGAAAGCTCAACCGCCCACTGTT
CAGAGAGTTCATCTGCCCACGGTGCAGAAAATTCAACCGCCTACCGTACA
GAGAATTCGACCAACCACACAGTCTCAAGGAACAACCGTTCAAATACATC
AAGGCAATAATCAACCGAATGGAATGGAGCAGCTTGATGGAACGATCATT
TCCGACCAACgttcaaatctttcaaaacaacaatcttTCCAGCAACTGTC
ACCAGCCAGACAGTCAAATCAATCCAACCGAATTCAACATCGTGACAAAC
CAGCTCTCAACGGTCCTTCCAATttaaagttttcgaaaaaaacgTCTTCT
TCAAATGCTATTCGAGTTAATAAGGGTCCATACCCAAATCTAAAGGAAAT
GCAACAGAATGCAAAAAGACAATCAATGAAAGAGCAAAGTCTAAACGCAT
CAAACATTAAATCAAACCTGATGAACATACAAAATCTGTTATTCCAACTC
AATCCAACAGGCAATATTGTACTTTCATCTACTGAGCAAAATGTTTCTCA
AAATAAACAGTCCATTGTGACTGTTGCCAGTTCTAATTCGGTAGGTCTTC
AAGCAGATATTGAAACTGCTGTCATCAGTCaaaaaaaGGCACAAGTTAAT
GCTTTCTTAAATCAGACACCAAATCCAAATTTTAACggacaaaaacaaaa
tgaacgCAACCACCTTGCTGGATATACTAATGAGCCTATGGTTCAAATCA
ATACCCTGAATaaagaaagaaggcccaaaagaaaagacaaaagaaaacaa
actcaatcgaatttgaagaaacgaaaaTCTTGCGAATTTAAACAACCGGA
AAAGGTgaaaattttgccaagaaaACATCTTAGACCAAAAATCTCGGACA
TTTCGACAGAGTATCAGTACCCTGCGTTTGTCGGTCAAAAATCTGCCAAT
TCAAATCTTAATCAGTTGCCAACTTCTAAAGACGGGGAATCGATACAAAC
CAAAATCAAGATTGAACCAGATGATTTTCCTAATATCGATATTGACATTG
AATCTGTTCTGAATTCGGGGGAAAATGTAAACATGATGTATAACAAACAT
GATCCCGTAGAAGAATCGTtggaaaagatttcaaaactaAAGAAACAGTT
AGATGCTAGTCTACGAAATGAAGCTTTTGATGCGTTATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000256_pilon | genome | sc0000256_pilon:243296..247512 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2038-4359:1896 |
| Aaloc | 1858-2034:969 |
| Aaloc | 1624-1857:488 |
| Aaloc | 1315-1620:1 |
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