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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000338_pilon:45765..49582+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_009934 ID=XLOC_009934|Name=XLOC_009934|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3818bp|location=Sequence derived from alignment at sc0000338_pilon:45765..49582+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaaatttcaaaTGTCATTTATTGGCAATCTTCTATCGAAACAAATACT
ATTTTCAACTACAAACAAATTTGCCATCAATTCCATCAAACAAAGTTTAC
TATTAACACAACAAAGCAAACGCCTAATGTCTGGTCAAGTAATCACCAAT
ACAGCAGACACTGGTCTACCTTTAAAAGAAGTGCTCCACCAGCTACAAGA
ATATGCGTCACCCTCCATCGCAGAGGGTTGGGATAACGTTGGTTTACTGC
TAGAACCCTCCTCCCCACATACAGTCAAACATTTATTCCTTACCAACGAC
TTGACAGAAGACGTATTAGACGAAGCTGTCTCCAAGAAGGCAGACCTTAT
CTTATCTTACCACCCACCCATCTTCTCCAGCATTAAAAGGATAACGCAAG
AAGCCTGGAAGAATCGACTTAtcatcaaatgttttgaaaacagaATTGCA
ATCTACTCCCCACATACTTCCTATGATGTCGTCAAAGGTGAGAATTGATT
TTATGATTCCTTTATTTTTGTGACGTTTTGCTTAAATAAACTATTACAAA
GAAATTaggttttttctgtttttcaatgCATGACAGATTTTTTGCAGATA
AGTTCAATTCCGACACTAATATAATGCTTAAAAAAGCGTTAAGCTGTCGA
TGTTCCTCAGTTGCTTAAAACCAACCTAATTTGTGTAGCGAGTTGGTTTG
ATTTGTTTGACTACAAATATTTTGTTACAATCTTTTGATTCATATTTACA
GTGCTATATCTTTTGTATTCAGGAGGAGTCAACGATTGGTTGATGAGCTG
TTTCCATGGAGATACGAAACCTATCAAACCTCTTGAACCAGGGGTAAGAA
TTTATGTtccctttttaaaaattttcttaaacttATCAATAAGAAGTTGA
AGGGGTTGCAgatgaaattttatttgataCATAAAAAGGTTCCATCTAAC
CGAATTTTAAAagagcgccactctttctctctAGATTGCTCTACTTACCC
TTGCTCCTTCCCTttaattactgagcatcaagTAGAGAAGCATTAAGTAC
CATTTAGAAAACTTTGTTAAGATTTTGccagggattgaacccacgaccct
GCGCACCGTAGCTTTACTTTTGCGCTACGGTTCGCATCATTTACTAAAAT
TTCAAAGCTGATTTGTAGTGTAAAGTTAATTTACCAtctcagacgaaaaa
ccttgctttgaccactgaacTAACCTAGAGCAATTGGTTGCGTTGAAATG
CTTGTGAAAGCTTTTGGACCTGTCATCACTAGAATTAATTAGTCCACGGC
TACCGAAGACAGCCATGATatggataaaagaaaaaaatgcaaaaactttt
caactACAACATCCACGTTTCTTTTTGTATTCACAGGTTGATAATGGTTT
CGGACAAGGTCGAATATGTACTTTAAAAGAACCACTGGCTATTGAAGAAG
TTGTACAAAAAGTGAAAACACACCTTGGGTTACCTTATTTGAGATTAGCT
ACTGCACCTGGAGTTGAGCAGGTATGGTGTATCATTTTTAAATGTTATGT
TAATCATAATTGCATAAACGTCCCCTGCTACACTCTGATGCTTAATAAAT
GGCCATCCCGCTCattaatatttcaatttttctcaaccCCCACCAAGGAC
CACCTCCCCCCtgtttattagttttttaaagtactttcagctgtcaaaag
aaGAGCCCTTTATTTTGCTAAAAACGAGTTTTAGTATAATTACcttgtat
agaccttttcataaattacgtcacgaacatcacttacctcgtatTCGGAC
AATTACCATGGTGGTTATgcctcttgagacattaaatgattttttttatg
aataggaagtagttttgataaaatctgctgggatttaatcaccatggcaa
taatttcaaaacgaggcaagtgatgttcgtaatgtaatctatgaaaaggt
ctatttagagGTACTATTTCAACCCCGGCAATTATGACCCTGATTTAAAA
GTTGGTTGTAACACCAACAGTGCCTTGAATTGAATCGGTTCGCCAAGCGC
CTGAATATTTAGCCGATCAATTATTAGACAGTAGGCCTTTTTAATATTAC
TTTGCGAACATTTACTGCctctttttgagtttatatGGTAATTGAATCCT
TAAAAGGGATCCATCAAAATTCGGCTCTGttggaaaaaatttaattttaa
gtcTCGTGAGATTGAAATACTTCATATTATTTGTCtgaaaacgaggcagt
cgttctCCGCGACGTACCGTAGTTTATATTTTGTTGCTATATTTTGCGTA
TCCATGCTGTAGCAACAtcctcttataaaaaataaaacagccgtaatgac
AGCTGCAAACTCTGGTGATTGTCAGGGGTTagcctttcttaatatatcta
acctaaaatttaaagtaagtaagtaagtgcGAGCGCAAACGCAAACTAAA
TTAggaaatcaaaccggaaagaTCGGGAAATGGAATCCGACTATCGTGAT
TGATCAGATTAAAACACGCACAAttataaatgaaaaacactgattttata
AAACTCCTTAACCGGAGTTTAAGAAGAGTGTTCTTTCTACGTCAAACTTT
CGGTCGtactttttattcaaacacTGTCTTCCCTTGATATGGTTTGCACC
ACCCTGAAGCTGTTACtattataattattattaaAGTTTTCATTCTTCTT
ATCATTCTTACTACGCACACTGATTCGAATTCTCCATGACATAAAAGCAA
GTTTATGTTTTCGAAGTAAATCGAAGGAGAATTTATGTCGAAGTTATGTA
GATATGAAGACTACACTGTATCACGATTTcaacttcttcattttctctAT
CAGAGCTCCTGCTCCAacattatctggcacccagatggttaAACTTTCAT
CCAACATTCTATAGCTctaaaggtcgggaaaattttcaacatctggaaag
TTTACATTATGGAATTTTGCGAAACCGCGTCATGGATTTCGCAGCGTTAG
GCCTGGAAACATGGCCCTCTTTTTCGTTTTCGTGGTTTGATGGGtccaac
cactgacctttatataaccctggaccaaacaatatctgccatctttgatt
ggagtttttttggaattggtacccaaggagaagccattgcaatgttaaaa
attaacgtctaacgccgctacatcatcaaaagaatttgaggaaaagtaga
cctagcgctctcgatgcaattacaccgctatcgagtagtgccgacattag
ggtaccaattttcaaaaaactccgatcaaagattttgcttggctgggatt
gagaagctttgtccagggtatataaaggtcagtgggtccaaccgaaatat
ttttaggttttcgCACAAGGGTACTTtaacccgactggggatgcggaACC
TTAAAGGCCGACCaccattcctctccgatgggaaattggcaccctccttt
agagctttagcgtgggcggccgccaatccgccatcggaatatcagataac
ctgCAACAAATCTTCAATCATTCTGATGTCTTTTTCTTTCGTCTTCTTTC
ATATCAGGTCCAGTCGATCGCTTGTTGTGCAGGTTCGGGATCATCTGTTC
TCCGTGGTGTCCGCGCGGACGTTTTTCTGACGGGCGAAATGTCTCATCAT
GATGTACTAgacgccgtttctaccaaaagtCATGTCATTCTATGTGAACA
TTCAAACACTGAACGTGGTTTCTTAAAAACTCTTATACCTGTTTTTACGG
GTatgctgaaatcgaaagtgaaagtaactGTATCAGAATTAGACAAAGAT
CCTTTGGTAGTAGTCTAA Coding sequence (CDS) from alignment at sc0000338_pilon:45765..49582+ >XLOC_009934 ID=XLOC_009934|Name=XLOC_009934|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1908bp|location=Sequence derived from alignment at sc0000338_pilon:45765..49582+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaaatttcaaaTGTCATTTATTGGCAATCTTCTATCGAAACAAATACT
ATTTTCAACTACAAACAAATTTGCCATCAATTCCATCAAACAAAGTTTAC
TATTAACACAACAAAGCAAACGCCTAATGTCTGGTCAAGTAATCACCAAT
ACAGCAGACACTGGTCTACCTTTAAAAGAAGTGCTCCACCAGCTACAAGA
ATATGCGTCACCCTCCATCGCAGAGGGTTGGGATAACGTTGGTTTACTGC
TAGAACCCTCCTCCCCACATACAGTCAAACATTTATTCCTTACCAACGAC
TTGACAGAAGACGTATTAGACGAAGCTGTCTCCAAGAAGGCAGACCTTAT
CTTATCTTACCACCCACCCATCTTCTCCAGCATTAAAAGGATAACGCAAG
AAGCCTGGAAGAATCGACTTAtcatcaaatgttttgaaaacagaATTGCA
ATCTACTCCCCACATACTTCCTATGATGTCGTCAAAGatgaaatttcaaa
TGTCATTTATTGGCAATCTTCTATCGAAACAAATACTATTTTCAACTACA
AACAAATTTGCCATCAATTCCATCAAACAAAGTTTACTATTAACACAACA
AAGCAAACGCCTAATGTCTGGTCAAGTAATCACCAATACAGCAGACACTG
GTCTACCTTTAAAAGAAGTGCTCCACCAGCTACAAGAATATGCGTCACCC
TCCATCGCAGAGGGTTGGGATAACGTTGGTTTACTGCTAGAACCCTCCTC
CCCACATACAGTCAAACATTTATTCCTTACCAACGACTTGACAGAAGACG
TATTAGACGAAGCTGTCTCCAAGAAGGCAGACCTTATCTTATCTTACCAC
CCACCCATCTTCTCCAGCATTAAAAGGATAACGCAAGAAGCCTGGAAGAA
TCGACTTAtcatcaaatgttttgaaaacagaATTGCAATCTACTCCCCAC
ATACTTCCTATGATGTCGTCAAAGGAGGAGTCAACGATTGGTTGATGAGC
TGTTTCCATGGAGATACGAAACCTATCAAACCTCTTGAACCAGGGGAGGA
GTCAACGATTGGTTGATGAGCTGTTTCCATGGAGATACGAAACCTATCAA
ACCTCTTGAACCAGGGGTTGATAATGGTTTCGGACAAGGTCGAATATGTA
CTTTAAAAGAACCACTGGCTATTGAAGAAGTTGTACAAAAAGTGAAAACA
CACCTTGGGTTACCTTATTTGAGATTAGCTACTGCACCTGGAGTTGAGCA
GGTTGATAATGGTTTCGGACAAGGTCGAATATGTACTTTAAAAGAACCAC
TGGCTATTGAAGAAGTTGTACAAAAAGTGAAAACACACCTTGGGTTACCT
TATTTGAGATTAGCTACTGCACCTGGAGTTGAGCAGGTCCAGTCGATCGC
TTGTTGTGCAGGTTCGGGATCATCTGTTCTCCGTGGTGTCCGCGCGGACG
TTTTTCTGACGGGCGAAATGTCTCATCATGATGTACTAgacgccgtttct
accaaaagtCATGTCATTCTATGTGAACATTCAAACACTGAACGTGGTTT
CTTAAAAACTCTTATACCTGTTTTTACGGGTatgctgaaatcgaaagtga
aagtaactGTATCAGAATTAGACAAAGATCCTTTGGTAGTAGTCTAAGTC
CAGTCGATCGCTTGTTGTGCAGGTTCGGGATCATCTGTTCTCCGTGGTGT
CCGCGCGGACGTTTTTCTGACGGGCGAAATGTCTCATCATGATGTACTAg
acgccgtttctaccaaaagtCATGTCATTCTATGTGAACATTCAAACACT
GAACGTGGTTTCTTAAAAACTCTTATACCTGTTTTTACGGGTatgctgaa
atcgaaagtgaaagtaactGTATCAGAATTAGACAAAGATCCTTTGGTAG
TAGTCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000338_pilon | genome | sc0000338_pilon:45765..49582 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 694-954:3558 |
| Aaloc | 559-693:1387 |
| Aaloc | 490-558:775 |
| Aaloc | 1-486:1 |
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