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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000054_pilon:797191..802626+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043130 ID=XLOC_043130|Name=XLOC_043130|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5436bp|location=Sequence derived from alignment at sc0000054_pilon:797191..802626+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTGGTAATAAATTGGATGATTATGATGTTGTGTGCACGATTGGAAG
TGGGTCATATGGCACatgtaaaaagataaaaaggaaAACTGATGGCAAGg
taaaaattcattttactCAGTTCTagtatatttttacatgtaggTATGAT
TTATGAATCATGTTTAGCAAAATTTTATGCCTTATAAAATGGAAACAGAA
AAATTGTCAAgtagcactttctttgtttttccaaAAACCTTTATGTCAGT
AAAGACAGCAGGATTATGCTGGGTCATAACCTAGGATAAGCTTTTTCTAA
GGAAATTGCCaacaaaattcaattcaaagcattTAAAGAAGTGATTTTTT
ACCTTAAAATTATTACATTGAATTTGTGCTGCTATTAAATATTCTATTGA
ACTTCATTTGTAGATCAGGGTTTGGAAGGAGCTTGAGTACGGCTCCATGA
CAGATGAAGAGAAGAAACTACTCGTTTCTGAAGTCAATTTACTGCGAGAG
CTCAAACATCCAAACATTGTTCGATACCACGACAGAATCATTGATCGAGG
GTCAACTAAGATATACATTGTAATGGAGTTTTGTGAAGGTGGTGATTTAG
CAGCATATATTTTGAAGTACAGGAAACAAAGGTTTGTAGATTAGATTTGC
TACTTTAGTCCCCTAGCCCAGAAAAGCACGCCActctttaaccctttccg
tgccgatgtcgtatatatccgacatgcaaattttcactctacttgccaat
gtcggatatatccgacatcaaCtttttttACCTAATTGCTGAGGCCTTTA
AAAGAGAGGGAGCTCTATTGCCGAGAAATcagcttttaggaaaatggttt
tcttatttgccaatgtcgtatatatccgacataaaaaaatccaaatagta
ATAGTGACAGTATATATTAAGtgctcaaaagatttatttcaggtttattt
tagtctatcataaaatatatataaaacaaatgtcaaatacaaatgtcaaa
cattggcaaataggaataaaatatccttgtcgtatatatccgacatgcgg
caacacgagttaaaatttgcatgtcgtatatatctgacatcggcaaatca
ggttactaaaaaaaattacccctcagcaaatggattggggtacaaaaaca
AGGTAACGGCACACAAAGGGTTAATTCCTTTGGATTTTTAAGAGGATATC
AATTATTTTAGAAATATACTCCTGAAAGTAAAAATACTAGGACCCCTTTA
AAGGATTTTTGACACTTCTACTATAGCTGCACTAATACTTTGTATAGTTT
CGAACACTTTCTGAGAATTCAAAGTTGTTGCCATCTTCTCTAAAGTAAAA
TCGTCTGAGCCCTTCTGTACGGTTTTAACACGTTCTGAAAGTTTCGAGTt
gcttcaattttttattttggaagaCCTGTCTCACAAATTAGCTTTGCTTa
tcattttgtctttttttctttaagaaaatttgTCGACGAGGCGTTCATCT
GGAAAGCACTCTACCAACTATCATTGGCTCTCAGTGAGTGTCACTTGCAG
TCCAGGGGTGGAAGCTCTGTTCTTCATAGAGATCTCAAGCCTGCAAATGT
TTTCCTAGATTCCAATAACAATTGCAAACTTGGTGATTTTGGACTGGCAC
GAGTATTGAATCATGATACAAGCTTTGCTAAAACATTTGTTGGAACGCCC
TATTATATGTCACCAGTAAGTTGAACCCTTCATCTTAAAACGTTCAGTTC
TTCATGGAAAAGgaaattgctgattttttgaACCCATTAACCAATAAATT
TGCTCATTCGTTTACTCCGCCCACCCATTGATCCATCAATCCCTCAGTAt
atccattcattcattcatttactggcatctgtccatccattcattcaatt
cgcctggtccattcatCAATTGATGAATGAATACATCCCCTCATTCATTC
TCTCATACATACATTCATTCATCTCTTCGCTCGTCTTATACCTATTCATC
ATTTCATGTTTGAAATTTAtctactttaattttttttttatttgacgttt
ATTTGACTTTGgtttccttaaaaaataaatgGCTCTTACCCTTTTTATAA
TAATATGATTCAGATCGCGAAACTGTTTTGAAAAGCTCGATTCGCGAAAG
ttgatttttgcgaaaacttttttcttcaaaagcttCTTTCCCTAACTAAG
GCACAACTTTTTTCACACCCAGGAATTGGTGAACAGAACGAATTACAACC
AAAAATCCGACATCTGGTCATTGGGATGTTTAATTTACGAATTGACTGCG
CTAATGCCTCCTTTCTTGGCTGCTAATCAAAAATTACTGGCAATGAAGAT
CAAGGATGGACACTACCGACCCATACCTACACATTATAGCAAAGACCTGG
AAACAATTATCAAGAAAATGTTGACTGTAGTGGTGGGTTAAATTCagttt
ttacattattttttcagCACAAACTGTTACAAGCTGTTAAACTGTTGGGG
CTCACTGGAAAAAAGTTATCGCGAATACCTATTATAGTaaaaaaaGTCAG
CACATTTCTGTCTGTAAAATAAGAAAGATTCACATATATGGCACAACAGG
ACCAGTAAAACTCACTATCCACGAATTGGCCACTGGCAATGTAAAACTAC
ACACATTATCATGTTTTCCGATGTTGGACATTATCAGTGTCGTGCAATGt
ttccagatttttttattATCCTTTTTCTTTTAGGAATCGAAGAGACCGAC
CATCGAAGATATTTTGAATTGTCAAGGCATTCGTAATTATTTGGAACCTC
CAGTTGCAAATGACAAACGAACTTCCATGCCAACATTGGAGTAAGCTATT
TACGTTTTTTATTGTCTTACGTCAACCTTCAGATCCTTTACTCATACTCC
GTTGAAATTGGTGCtgtaaaaattttcacaatttctCACATTGCAAATCA
AATGAGAACATGAAATCTTAGATTAATTTAGTGACGATTATCGTTTATTC
AGTTTACAATTTTTTGGGGAATTAATGAAGCATTCAATTCTTTTAGTGAC
TTGGataatgaaagtttgaaaaagaaagaggaACAGCTTCGAAAGTGGAG
TCTTGATttggaaatcaaagaaaaacagttaaaacgTAAGAACATCCATT
CAATATTTGTTTAGCGAAACATTTTTGATGCCATCGATGTGGCTCCTTCT
CTACCTTACATACTAATACCTAGATAAATGGAAATACTGGAGGTTTTATT
ATGGCCCTCTTTCCACTCTATCAAATTATAACTAGCGTTTTGAGAGAAAT
GCGTACAGTCTATTGATGTTAGTGTATCTAATcaatgttgttttttgttt
tattttagaaaagGAAAAAGACTTGGTTGAAAGAGAAAGGATACTTGACA
ACAGACTTCGGTAAGATTTATTCCTTtgctattttgatttttgaaagcaC
TCAGCACCCCATTACTATTCTCAATTAAGGGGGAGATGAAGAAAACAATC
GTTTTCCAGAGTTATTTCCTCGTGATATTTCGGATTCTAAACAAGAAAAC
GGGTGTTAGCGACGTAATCCTTCCTATAATAAATATCATAGCTTCTTTAG
TCCTAGTTGTCAAAGTGCTTGCCTTCCTGgatgttttgtcatttttgttc
aGAATTTAGAGTTAGGGCGAGAAAGAGTGATCATTTTCACTTATTTTTCG
ACATTTCGATTAGGGGTTTATTTAGTTAAAAACAATTATGAGCTTTTGGA
TTCTGATCCGAAGGTCATTCTCGATGTGAGTTAGAGTACTTCAAAATCAT
TTGAAGGAATGCCTTTTGTCTTCGGTCATCAACGATTGTCAGTTGCCAGT
GGCTGATTTTATtcctacagtatatggcccccaaaacggagacggccccc
aaaacggaggttttcattaaaatgaagattctgacttgtagatttatcag
aattaaacgatttttgtttattttgaaagaatgatggttatacttaaaaa
tgagcatgtttttgctggtttgagacagattcaaaataacatatttgcgt
ctgtaggaaatattttaacaccaaaattagataaaaattgcatataactc
actctagctccttggatattgaaaataagttatgaaaacggggtatagga
aactttctacacctaataccgttcagaaaatgcaaatacatctgtgactt
tagaggctgggtaaaggatatagcatcttgaaggtcaaccagtattttgg
agccctagaatcagcattgacaaaaccgaaaattctaaatatgagaaaaa
gcaaaaaatcttggaattctattcttatcaccttgagttaatagtttata
acaaaaaattaacattatatataaaattttccgctgaatcagcaaaaacg
gcaaattctgtcatttttttgcaaaatataggagaaaaatatctttaaag
cttaatattttcagtttcagttaagctttttttctaaaattttcacagct
tattccatacatgaatggaactattttcaaaagagatttgttttcaaaaa
cttgattaagacgttgttaaatcaaaattgtcattttgaaaatttctaaa
ttttcagtttggactttgcaatatcgaaaatcttgaaatatttcataaaa
atcataaattttacatccatcgggtcgtaaatttaaggggaaacacaaat
atgttcatagtttttccccctattaccactgggcttaataatttgatttt
aagtacacctccgttttgggggccccaaacctgcattttgacaaccaggg
gtatactgtaaaaattttatcaaacaaatttatgcccaaaaccttctaaa
tcatacttcaaaactatggtcaaaattttgtattcatatcttaaagatat
ctcgagaaatcgctaaaatttcaaacctccgttttgggggccattagaaa
aaagctacctatctttaagcgattgaaaaatatttttgaaattgaaaatt
ttgaaaaagaacttccaggaaataaagtacagatgttaaagtttttcatg
cagcaaaaatttttgtaaaacctcttttcctctagatttgagagaaattt
caaatttgatcgccgttttgttttcattatagCTCCGACAATTTATACCC
TGCTCATAAAAGATTAGCGATGCCTGACAAAGAGAACATATTCAACAAGA
AGAACGAAGATCAGAGGTTAGTTGAAATGGATTGGAAAACAGGCTACCAC
CGTAATAAAGATTACGAGATGAAAACAGACTTTCGACCTCACGTAGGTGG
CGGCGGGGGCATCGGTGATGTTTATGCAGCTGAAATCAACAAGCACAATC
GTGCCTTACGACAATTGGATCACAATTTTGACGTTAATAGATACGAAACT
AGACTTGCACGACCCTTCCCGTACGGTCTCAGGTAG Coding sequence (CDS) from alignment at sc0000054_pilon:797191..802626+ >XLOC_043130 ID=XLOC_043130|Name=XLOC_043130|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2640bp|location=Sequence derived from alignment at sc0000054_pilon:797191..802626+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTGGTAATAAATTGGATGATTATGATGTTGTGTGCACGATTGGAAG
TGGGTCATATGGCACatgtaaaaagataaaaaggaaAACTGATGGCAAGA
TGCCTGGTAATAAATTGGATGATTATGATGTTGTGTGCACGATTGGAAGT
GGGTCATATGGCACatgtaaaaagataaaaaggaaAACTGATGGCAAGAT
CAGGGTTTGGAAGGAGCTTGAGTACGGCTCCATGACAGATGAAGAGAAGA
AACTACTCGTTTCTGAAGTCAATTTACTGCGAGAGCTCAAACATCCAAAC
ATTGTTCGATACCACGACAGAATCATTGATCGAGGGTCAACTAAGATATA
CATTGTAATGGAGTTTTGTGAAGGTGGTGATTTAGCAGCATATATTTTGA
AGTACAGGAAACAAAGATCAGGGTTTGGAAGGAGCTTGAGTACGGCTCCA
TGACAGATGAAGAGAAGAAACTACTCGTTTCTGAAGTCAATTTACTGCGA
GAGCTCAAACATCCAAACATTGTTCGATACCACGACAGAATCATTGATCG
AGGGTCAACTAAGATATACATTGTAATGGAGTTTTGTGAAGGTGGTGATT
TAGCAGCATATATTTTGAAGTACAGGAAACAAAGaaaatttgTCGACGAG
GCGTTCATCTGGAAAGCACTCTACCAACTATCATTGGCTCTCAGTGAGTG
TCACTTGCAGTCCAGGGGTGGAAGCTCTGTTCTTCATAGAGATCTCAAGC
CTGCAAATGTTTTCCTAGATTCCAATAACAATTGCAAACTTGGTGATTTT
GGACTGGCACGAGTATTGAATCATGATACAAGCTTTGCTAAAACATTTGT
TGGAACGCCCTATTATATGTCACCAaaaatttgTCGACGAGGCGTTCATC
TGGAAAGCACTCTACCAACTATCATTGGCTCTCAGTGAGTGTCACTTGCA
GTCCAGGGGTGGAAGCTCTGTTCTTCATAGAGATCTCAAGCCTGCAAATG
TTTTCCTAGATTCCAATAACAATTGCAAACTTGGTGATTTTGGACTGGCA
CGAGTATTGAATCATGATACAAGCTTTGCTAAAACATTTGTTGGAACGCC
CTATTATATGTCACCAGAATTGGTGAACAGAACGAATTACAACCAAAAAT
CCGACATCTGGTCATTGGGATGTTTAATTTACGAATTGACTGCGCTAATG
CCTCCTTTCTTGGCTGCTAATCAAAAATTACTGGCAATGAAGATCAAGGA
TGGACACTACCGACCCATACCTACACATTATAGCAAAGACCTGGAAACAA
TTATCAAGAAAATGTTGACTGTAGTGGAATTGGTGAACAGAACGAATTAC
AACCAAAAATCCGACATCTGGTCATTGGGATGTTTAATTTACGAATTGAC
TGCGCTAATGCCTCCTTTCTTGGCTGCTAATCAAAAATTACTGGCAATGA
AGATCAAGGATGGACACTACCGACCCATACCTACACATTATAGCAAAGAC
CTGGAAACAATTATCAAGAAAATGTTGACTGTAGTGGAATCGAAGAGACC
GACCATCGAAGATATTTTGAATTGTCAAGGCATTCGTAATTATTTGGAAC
CTCCAGTTGCAAATGACAAACGAACTTCCATGCCAACATTGGAGAATCGA
AGAGACCGACCATCGAAGATATTTTGAATTGTCAAGGCATTCGTAATTAT
TTGGAACCTCCAGTTGCAAATGACAAACGAACTTCCATGCCAACATTGGA
TGACTTGGataatgaaagtttgaaaaagaaagaggaACAGCTTCGAAAGT
GGAGTCTTGATttggaaatcaaagaaaaacagttaaaacTGACTTGGata
atgaaagtttgaaaaagaaagaggaACAGCTTCGAAAGTGGAGTCTTGAT
ttggaaatcaaagaaaaacagttaaaacaaaagGAAAAAGACTTGGTTGA
AAGAGAAAGGATACTTGACAACAGACTTCGaaaagGAAAAAGACTTGGTT
GAAAGAGAAAGGATACTTGACAACAGACTTCGCTCCGACAATTTATACCC
TGCTCATAAAAGATTAGCGATGCCTGACAAAGAGAACATATTCAACAAGA
AGAACGAAGATCAGAGGTTAGTTGAAATGGATTGGAAAACAGGCTACCAC
CGTAATAAAGATTACGAGATGAAAACAGACTTTCGACCTCACGTAGGTGG
CGGCGGGGGCATCGGTGATGTTTATGCAGCTGAAATCAACAAGCACAATC
GTGCCTTACGACAATTGGATCACAATTTTGACGTTAATAGATACGAAACT
AGACTTGCACGACCCTTCCCGTACGGTCTCAGGTAGCTCCGACAATTTAT
ACCCTGCTCATAAAAGATTAGCGATGCCTGACAAAGAGAACATATTCAAC
AAGAAGAACGAAGATCAGAGGTTAGTTGAAATGGATTGGAAAACAGGCTA
CCACCGTAATAAAGATTACGAGATGAAAACAGACTTTCGACCTCACGTAG
GTGGCGGCGGGGGCATCGGTGATGTTTATGCAGCTGAAATCAACAAGCAC
AATCGTGCCTTACGACAATTGGATCACAATTTTGACGTTAATAGATACGA
AACTAGACTTGCACGACCCTTCCCGTACGGTCTCAGGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054_pilon | genome | sc0000054_pilon:797191..802626 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1081-1317:5200 |
| Aaloc | 1018-1080:5134 |
| Aaloc | 967-1014:3361 |
| Aaloc | 877-963:3048 |
| Aaloc | 769-873:2734 |
| Aaloc | 559-768:2223 |
| Aaloc | 319-558:1476 |
| Aaloc | 100-315:414 |
| Aaloc | 1-99:1 |
|
