XLOC_034906 (mRNA) -

Overview


Name	XLOC_034906
Unique Name	XLOC_034906
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000102_pilon:614351..619860+
coding sequence from alignment at sc0000102_pilon:614351..619860+

mRNA from alignment at sc0000102_pilon:614351..619860+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_034906 ID=XLOC_034906|Name=XLOC_034906|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5510bp|location=Sequence derived from alignment at sc0000102_pilon:614351..619860+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGGTTGAAATTTCTACGCAATGTTTTGATTGTGGTACTGTTTACATT
GGCAGTCAGTCACTTAATCCATGCTTCTCCTCCACTTGATGCATCAACCG
TCAGCAAAGCTAAAGGAGCTTCCAAAGTAGCTGGCTCTCTTTCAGATGTG
TCATCTAAAGCAAGCAAATTCACAAAAGTACTCAATGGAGGTCTTTCTAC
ATTCAGCACATATGTTTACGGGATTACAGCAACAATGGCGGTGATTGATT
TGATATGGCCTGGAATCATTCCTACAAGCGAGCCTGCTTACGTGGCCGAG
ATGAGAGCTTATTTTGAGGTTCTGAAAGCAGAGTTTCGCGTTGTGAAGAA
TCAGATCAATGATTTGAAATTATACGTTCAAGAACGGAGCACTGATCAAA
TATACGCCGGTTACGTCATTTCAATTCATACCACGGTAATTTTTCCGCAA
CTATCTTTCTGAACACGTTCCCTGTATTAGTGCGAATTCTTTTGTCAGTG
GGGATAGAATGatgtcattactgaaaaggtatTATTAGGAGaaaaaaaGT
CTGTAGTTTTGTCTTAATTGGGcggaaattttaaaaagcacaaaaatcca
gtttggattttcaaagttttcacatCATTCCAAATGAAGATTAAAAGCTC
AGTCCAATGGAGACTTCCAAAGGGAAATTTCGGAATTTTaactctaaaaa
aaattaactctgACGATTTCTAGATTCAATGCCTGCAAATTCTTAGCAAG
CGTATAGTAAGTGTATGAGTGTATTGAGTAGCATAAATATAAATTTGAGT
CTGCGAGCagaaattttcgaattgtaaTTCGCCATTCGCCGGGCCTAAAT
AAAACCCCTGAATCAAGAAACTTCTTCAGCTGTGTCTGTGAAAGGACATT
ATTATTTAATGTATCTTCCATACGATTTGCATTTTTATACAAaggaaaga
acaatttttttcactgtTGGTGTTGCGTGAGCACAaatgagaaattcttt
tgtttattatGCTTCGTCAGCATAGAAGGCGCGTCTCCTGTTTACatcaa
aaacagattttttatatttggcttagagataccttttatggtcAAGAGAG
ACACCTCTAAATCTTTTGACCCAATTTTTCCAATGCTGGGATATTTaact
ttgaaatctctaaaaatgagtctttacacagtctttacgttgcatttcta
ttgttttcaagtaaaaatttgaaaattcaaagtcgaatatctcagctttg
gaaatgATTGGGTCAAAAACTTTAGAGGTGTTTCATaggaccataaaagg
tatctctaagctaaatatcaaaaatcatctgataatccctttaacAATAA
TACTATTTTCTACCAGGAATTGAGTTACCAAGATTACATGGATGCATCTG
CATCATTGAGAGATGCATATGGAAAATCGTTCGTTCAGAATTACGATCAG
TTAGGAAACCATGCAGATAAATTGTACACCGGACTTGTTATTGCTGATGA
CAATCTAAACATTGCCAAAAATGCTATTTCATACACTAAAGGTAATCCGT
TTATTTCTTTGAATAGTAAAGGCCGGTATCCATTTATTTTCGCGCAAAGT
GGAGGACTGtttttttCTCAGCCTTTTTTGTCTAAGAAAAGATtgcgtca
taaaaaagtttcgtgtgaacgaaaaaaaagttgaaggaagttcaactttt
ttcaaccgttacgtcaattttgaccaatgcaattgtttcattttccaacc
gaccttacaaaaacgtaagaaagttttcgctcatttcgcgcgaaagtgga
gaccagccttaaAGTTGAtctacaaaaatatttagcagTTCAACACAACA
TACAAAAACCCAAACACCAAGGTTTTGGAAAGGCCATATACCAGTCTCTG
CCAATAGTTTATAGCTCGGAACTACTTCATTTCCAGCCGAATATAATTAG
ACTGCAcaccccttttcacagacccggaaggattttttcagccaccGGGG
ATAAAtataacagactgaaactcgatatggggattgatatttctatATTC
TTTATGACTGgggtttaaattcttttgttttcaagtcagaaaatccagtg
gggatgaagaAATAGCACAATAACTTtactgtgagaagggggtgtgaaaG
CTGAGTCCAAGAGCGTTTTAACGCTGTGAATAATTTTACCTTAACGCACG
TGAAAAAGAGGGCTTAAAtcgattttaaagatttttatggGTTCTGATTC
TGTAAATCGTactcatttttgctaaaatagTCGTGTTGGCATTTTTGCAC
CAAGTTGGCAGGAATATCCAATTTAAACATTGAAACCAAGGATAAGACAA
TGTGAACTAAATagctcgaacacgcacgggaaacacttgttcgagttaag
ggtATTTCAAGTTATGgaataaggtttataaggcattgttaactgaaggg
accaggaAAACTTGTACGAGTTAAGGAGACACTCAAGTTTTAAAGTTTCG
AGTTATGAGAGTCTACTGTATCTATATAAAGATTTAATTTACTTCGCTTT
TAAGGTGACAGAGACAGAATTTTGGAGATCATGTTTGAGTTGTTCAACGT
CATTAACATGGGTATCAAGCATGAAGCACTTTATTACAAATTGACGGACG
ATACAGAACAAATTGCCGTGTTGGACGACCGATGGGGTTCTCGAATGAAC
AACCTACAGAAAGTGATGAAAGCAATCGATGATGAGGTTGTCAAAGGTGC
AAACGATCGAATGCAAACAgatttcaatgaaaatgtcGTTGAATTGAAAG
ATAAAGACAACAAGAAAATGGCGCAGAATTTGTACGATTTCTTCAGTGAG
AAATACTACTGGAGAGGACTGGGTGGTACTTGTTTACTCAAAGTCTGTTT
CAGGCTTTAGCAACCATGCTTATAATTACTGCCGTAACAATTGCATTTTC
CGAAAGAGGTTGGGTGGCGGTGTGGATAAAACCATCTACGTGTTCCATGT
GAATAAAGCTTCTGGATCATGGATGACGAAAAGTAAAGCTAGTAAGATCC
TCTCAACTGGACCTTACACCTACAAAGGTAAATGTTATAAGTATGAATGG
TTCTTCTTCTCAAGATATCGGAAAAGCTACTCATGTGATAAACCACAGAA
GGACTTAGCGAAAACCAGAGATGCAGTGCGAGGTGAGCTTAAAGTTTGTA
GCATTACTAAAGCCATCGTGATGCTTAAGAAAAAGCATAGTTACGGCATC
GTTGGAGATGATAGAATCAAAGTTCATTTGAAGAAAGGAGATTTCAATGC
ATTTGCAGTTGGCCCTTATGGATCTTCGAGTGCTCAAGAATCTGTGGAAG
GTTATTCAAGTAAGCTTATAAAATTCACTATTTGTTTAAGAAAATTATTC
AAACAAACGATTTGAAGTTGCAAAATGAAGTAACGGGTTCTAGGTTCTAT
TTTATCGTCAGATAGTTTATACGTTTTATAAGTTATTAAGCAGTAGAGCT
ATCTACATTTATTTGTGTAGCAAATCTTGATTGACTATGAGGACAATAGT
TAAAGCAACTTTTTGGCAAGTTCGCAATGCATGCGTCCCTGAAATCGTCG
GTCTTATTCGTCGTGAGAATCGAAACTGACGTACTTTTCGATGTCGGACT
TTATAACACATGCTATCAATGTATTACATGCATGTTATGTGAAATTAGCT
ATATCAACTAAAAATCGGGAAGCATACATTGCGAACTtgcctttttttga
tttttttattcagccaagattccctaaaatattttttctttgtttttcgt
GCAGTAAATGGAGGCTGGACTTCTTGGACTCCTTATACGAGTTGTTCAAA
AACATGTGGAGGTGGAATTAAAACAATATCAAGATATTGTAGAAATCCAG
TTCCTCAAGATGGTGGAAAGTCTTGTTCGGGGCGTAGTACTTATAGCAGA
TCTTGCAACACGTTCAGCTGCTTCTGTAAGCATTCTATTCGCATTTTATT
CAACACccatctggcacacaacgttgtttcaacgttcacataacgttata
tggatgttgtgaacgttagataaacgttgaaacaacgttgtttgccagct
ggGCAGTTTGGTTCCCTTTCCAATCGCTTCTTttagcttcaatccttttt
gatACTGCGAGGCTATGAATACTAAACTGTGACGACTAATCAGGTTTCTT
Ttaagttgtttcaacgttcatcaacgttatatggacgttgtgaacgttag
atgaatgttgaaacaatgttgtgtgccagctggggataAAGCGGTACCAA
TTAAATTACGAATAAGAAACATAGAAAAGACTCAATGAAAAAGAGCTGGT
TGAATCCATTGCATATGAATACGATATTTTAGATCGGAGCAACGAaatcc
cagctggtacacaacgttgttttaacgttcaaataacgttatttggacgt
taagaatgtcacatggacgttgttttgacgttgtgtgctgTCTGGGATAG
CATcgttttcttttaaatcaatAAGGTAGAGGCTTTGAAATGTAAAATCG
CTTACAAAGACCTATAAAGTAAATTGTTTGATTCTATTCCTTTCAGCGAA
gacatttttgaagaaaaaaatcgaaagcaTCATGATTTCAAAGAAGAAAT
TGAGTAACACAGACTTTGCTGTATATCTTCGTGCGCAACTCAAAACAACT
TATCCAGAATATCGTTTTGCCGTCAACGCGTACAAATCCATCCGTGGTTC
AAGCAAACATTCGATGCAGGGATACAGTTACGTTTACATCTTCCGTAAGC
ACGGCCGTAATGTGGTCGTGTCCTACACTAAAAAGTCAAACAAAGTTCCG
AATTCGTCCACTTTGAGGGCGATCGAAAAAAGAATTGTTGCTGCTATCAA
AAATAAGGTTAGAAGATATCTTTTACATCTCCTCCACGGGTTTTGCTTTG
GTGTTTGTTTATCCTGGTGAACgacaaatgtcaaattttgatgacagttt
ttCGTACTTTAGAGCTGATAGCAAATTCGAATTTCCACAACAGTTTTTGA
ATAAAGCGTTTTTTGTTTCACTAAACACTGTTCTAtttacagttgatgct
ctctaattcaacgttctactattcgataggctcctcaatttgatgaaatt
taaagtccccgtcaacaagaaactctcatacacgacgctcccttattcga
taagttcccttattcccttattcgatgaaaactGCTAACAAAAGTATAAT
TTAACCGATTTGACAAAAATGCATGGACTCACCACTATGCtccctttttc
atttttatacagGGTAAAGACGCAAAGAAATCACGTCAATTAGCATGGGC
CGCTTTGAAGAAAGAAGGTTATCGTGTTGCCATGGTACTAGTGGTGCGAT
TTGGAAACGGGTTACGCACAAGATCGACTGGCGGCGGTGTAACCttcgaa
aatttcaattctTCTGGGAGTCACAAATCTTCGCTCGTTATtatgcttgg
aaaagcttaa

Coding sequence (CDS) from alignment at sc0000102_pilon:614351..619860+

>XLOC_034906 ID=XLOC_034906|Name=XLOC_034906|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4190bp|location=Sequence derived from alignment at sc0000102_pilon:614351..619860+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGGTTGAAATTTCTACGCAATGTTTTGATTGTGGTACTGTTTACATT
GGCAGTCAGTCACTTAATCCATGCTTCTCCTCCACTTGATGCATCAACCG
TCAGCAAAGCTAAAGGAGCTTCCAAAGTAGCTGGCTCTCTTTCAGATGTG
TCATCTAAAGCAAGCAAATTCACAAAAGTACTCAATGGAGGTCTTTCTAC
ATTCAGCACATATGTTTACGGGATTACAGCAACAATGGCGGTGATTGATT
TGATATGGCCTGGAATCATTCCTACAAGCGAGCCTGCTTACGTGGCCGAG
ATGAGAGCTTATTTTGAGGTTCTGAAAGCAGAGTTTCGCGTTGTGAAGAA
TCAGATCAATGATTTGAAATTATACGTTCAAGAACGGAGCACTGATCAAA
TATACGCCGGTTACGTCATTTCAATTCATACCACGATGAGGTTGAAATTT
CTACGCAATGTTTTGATTGTGGTACTGTTTACATTGGCAGTCAGTCACTT
AATCCATGCTTCTCCTCCACTTGATGCATCAACCGTCAGCAAAGCTAAAG
GAGCTTCCAAAGTAGCTGGCTCTCTTTCAGATGTGTCATCTAAAGCAAGC
AAATTCACAAAAGTACTCAATGGAGGTCTTTCTACATTCAGCACATATGT
TTACGGGATTACAGCAACAATGGCGGTGATTGATTTGATATGGCCTGGAA
TCATTCCTACAAGCGAGCCTGCTTACGTGGCCGAGATGAGAGCTTATTTT
GAGGTTCTGAAAGCAGAGTTTCGCGTTGTGAAGAATCAGATCAATGATTT
GAAATTATACGTTCAAGAACGGAGCACTGATCAAATATACGCCGGTTACG
TCATTTCAATTCATACCACGGAATTGAGTTACCAAGATTACATGGATGCA
TCTGCATCATTGAGAGATGCATATGGAAAATCGTTCGTTCAGAATTACGA
TCAGTTAGGAAACCATGCAGATAAATTGTACACCGGACTTGTTATTGCTG
ATGACAATCTAAACATTGCCAAAAATGCTATTTCATACACTAAAGGAATT
GAGTTACCAAGATTACATGGATGCATCTGCATCATTGAGAGATGCATATG
GAAAATCGTTCGTTCAGAATTACGATCAGTTAGGAAACCATGCAGATAAA
TTGTACACCGGACTTGTTATTGCTGATGACAATCTAAACATTGCCAAAAA
TGCTATTTCATACACTAAAGGTGACAGAGACAGAATTTTGGAGATCATGT
TTGAGTTGTTCAACGTCATTAACATGGGTATCAAGCATGAAGCACTTTAT
TACAAATTGACGGACGATACAGAACAAATTGCCGTGTTGGACGACCGATG
GGGTTCTCGAATGAACAACCTACAGAAAGTGATGAAAGCAATCGATGATG
AGGTTGTCAAAGGTGCAAACGATCGAATGCAAACAgatttcaatgaaaat
gtcGTTGAATTGAAAGATAAAGACAACAAGAAAATGGCGCAGAATTTGTA
CGATTTCTTCAGTGAGAAATACTACTGGAGAGGACTGGGTGGTACTTGTT
TACTCAAAGTCTGTTTCAGGCTTTAGCAACCATGCTTATAATTACTGCCG
TAACAATTGCATTTTCCGAAAGAGGTTGGGTGGCGGTGTGGATAAAACCA
TCTACGTGTTCCATGTGAATAAAGCTTCTGGATCATGGATGACGAAAAGT
AAAGCTAGTAAGATCCTCTCAACTGGACCTTACACCTACAAAGGTAAATG
TTATAAGTATGAATGGTTCTTCTTCTCAAGATATCGGAAAAGCTACTCAT
GTGATAAACCACAGAAGGACTTAGCGAAAACCAGAGATGCAGTGCGAGGT
GAGCTTAAAGTTTGTAGCATTACTAAAGCCATCGTGATGCTTAAGAAAAA
GCATAGTTACGGCATCGTTGGAGATGATAGAATCAAAGTTCATTTGAAGA
AAGGAGATTTCAATGCATTTGCAGTTGGCCCTTATGGATCTTCGAGTGCT
CAAGAATCTGTGGAAGGTTATTCAAGTGACAGAGACAGAATTTTGGAGAT
CATGTTTGAGTTGTTCAACGTCATTAACATGGGTATCAAGCATGAAGCAC
TTTATTACAAATTGACGGACGATACAGAACAAATTGCCGTGTTGGACGAC
CGATGGGGTTCTCGAATGAACAACCTACAGAAAGTGATGAAAGCAATCGA
TGATGAGGTTGTCAAAGGTGCAAACGATCGAATGCAAACAgatttcaatg
aaaatgtcGTTGAATTGAAAGATAAAGACAACAAGAAAATGGCGCAGAAT
TTGTACGATTTCTTCAGTGAGAAATACTACTGGAGAGGACTGGGTGGTAC
TTGTTTACTCAAAGTCTGTTTCAGGCTTTAGCAACCATGCTTATAATTAC
TGCCGTAACAATTGCATTTTCCGAAAGAGGTTGGGTGGCGGTGTGGATAA
AACCATCTACGTGTTCCATGTGAATAAAGCTTCTGGATCATGGATGACGA
AAAGTAAAGCTAGTAAGATCCTCTCAACTGGACCTTACACCTACAAAGGT
AAATGTTATAAGTATGAATGGTTCTTCTTCTCAAGATATCGGAAAAGCTA
CTCATGTGATAAACCACAGAAGGACTTAGCGAAAACCAGAGATGCAGTGC
GAGGTGAGCTTAAAGTTTGTAGCATTACTAAAGCCATCGTGATGCTTAAG
AAAAAGCATAGTTACGGCATCGTTGGAGATGATAGAATCAAAGTTCATTT
GAAGAAAGGAGATTTCAATGCATTTGCAGTTGGCCCTTATGGATCTTCGA
GTGCTCAAGAATCTGTGGAAGGTTATTCAATAAATGGAGGCTGGACTTCT
TGGACTCCTTATACGAGTTGTTCAAAAACATGTGGAGGTGGAATTAAAAC
AATATCAAGATATTGTAGAAATCCAGTTCCTCAAGATGGTGGAAAGTCTT
GTTCGGGGCGTAGTACTTATAGCAGATCTTGCAACACGTTCAGCTGCTTC
TTAAATGGAGGCTGGACTTCTTGGACTCCTTATACGAGTTGTTCAAAAAC
ATGTGGAGGTGGAATTAAAACAATATCAAGATATTGTAGAAATCCAGTTC
CTCAAGATGGTGGAAAGTCTTGTTCGGGGCGTAGTACTTATAGCAGATCT
TGCAACACGTTCAGCTGCTTCTCGAAgacatttttgaagaaaaaaatcga
aagcaTCATGATTTCAAAGAAGAAATTGAGTAACACAGACTTTGCTGTAT
ATCTTCGTGCGCAACTCAAAACAACTTATCCAGAATATCGTTTTGCCGTC
AACGCGTACAAATCCATCCGTGGTTCAAGCAAACATTCGATGCAGGGATA
CAGTTACGTTTACATCTTCCGTAAGCACGGCCGTAATGTGGTCGTGTCCT
ACACTAAAAAGTCAAACAAAGTTCCGAATTCGTCCACTTTGAGGGCGATC
GAAAAAAGAATTGTTGCTGCTATCAAAAATAAGCGAAgacatttttgaag
aaaaaaatcgaaagcaTCATGATTTCAAAGAAGAAATTGAGTAACACAGA
CTTTGCTGTATATCTTCGTGCGCAACTCAAAACAACTTATCCAGAATATC
GTTTTGCCGTCAACGCGTACAAATCCATCCGTGGTTCAAGCAAACATTCG
ATGCAGGGATACAGTTACGTTTACATCTTCCGTAAGCACGGCCGTAATGT
GGTCGTGTCCTACACTAAAAAGTCAAACAAAGTTCCGAATTCGTCCACTT
TGAGGGCGATCGAAAAAAGAATTGTTGCTGCTATCAAAAATAAGGGTAAA
GACGCAAAGAAATCACGTCAATTAGCATGGGCCGCTTTGAAGAAAGAAGG
TTATCGTGTTGCCATGGTACTAGTGGTGCGATTTGGAAACGGGTTACGCA
CAAGATCGACTGGCGGCGGTGTAACCttcgaaaatttcaattctTCTGGG
AGTCACAAATCTTCGCTCGTTATtatgcttggaaaagcttaaGGTAAAGA
CGCAAAGAAATCACGTCAATTAGCATGGGCCGCTTTGAAGAAAGAAGGTT
ATCGTGTTGCCATGGTACTAGTGGTGCGATTTGGAAACGGGTTACGCACA
AGATCGACTGGCGGCGGTGTAACCttcgaaaatttcaattctTCTGGGAG
TCACAAATCTTCGCTCGTTATtatgcttggaaaagcttaa

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_034906	XLOC_034906-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000102_pilon	genome	sc0000102_pilon:614351..619860 +

Properties


Property Name	Value
Aaloc	1897-2094:5313
Aaloc	1588-1896:4599
Aaloc	1417-1584:3807
Aaloc	922-1413:2867
Aaloc	613-921:2557
Aaloc	436-609:1367
Aaloc	1-435:1

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XLOC_034906 (mRNA) -