XLOC_037564 (mRNA) -

Overview
NameXLOC_037564
Unique NameXLOC_037564
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000042_pilon:1427461..1432673+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037564 ID=XLOC_037564|Name=XLOC_037564|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5213bp|location=Sequence derived from alignment at sc0000042_pilon:1427461..1432673+ (Clytia hemisphaerica_ch_hm2_pilon)
atGTTGGTATTATTCGAAACTCCTGCTGGATATGCTGTATTCaaggtatt
tatttttgtttatactttttatatAttttcttcaaactttgtTTATAATG
GTCAAAGATAAAGGCTTGCCTAATTCACACTGATTTCTGATTACTTTAAC
TCTGGATTATGAAAGTTTAATGGAGACTACCattttagcatttttagata
cttatacatattttatttttacttttagcttttaAATGAGAAGAAACTGG
CTGAGGTTGATAACCTCTATAAAGATTTTGAAACTGGAGATAAAGCCAGC
CAAGTGTAAGTTTAAAGTTGTACTGTCGTGAAACACAGTAAATTTTAAAG
CTCTTTGTAACCTGAATTATTACATCATAAGAGTCTTAATGTCAATAGAA
TTTGTCATGTTGGAAGATCGAAAGTAGGAAAAGGTAAAACTGGTTATTGa
aacttttaatttgttttttcagggtcaaattgaaacatttcaaaaaattt
gaagataCAACTGAAGCTCTCGCAGGTAATTTTTAAATGGTTGATATGCA
ATTTGTCATTCTCAGGGCTTTTTTCAAAGACCAATTCAATTTtcagttga
aaaaaatatcCAGGTTTGCTATTGTTATTGTGTCTTTGTAACAACTTGAT
ATTAATTTAGTTAATCTATTTCTTTGTAGCTGCCACTGCATCGGTAGAGG
GAAAAATGTCAAAGTcactgaaaaaattgatgaaaaaggtGGCTTCTAAA
GAGGTCACTGAAGAAATGGCAGTTGCTGATGCTAAAATCGGAAACATTAT
CAAAGTAAGAATTCTATAGATTTTActatatttctatattttttactTGT
TCCTTGGCAGTTCTTTTGCATGTTAATAACTTGATTTGACTAGTATTATT
GAATTCTTATCTTTTGCATGTTTTAGGAAAAATTCGACATCAGCTGTGTT
TGCTCTTCTGCTATTCATGAATTGATGCGTGGGATCAGATCTCAAATGAA
CAGCTTAATCACAGGTAATGTTGTCTTCATTGAATAATGTAAAAAGCTTT
TGATTTATATGATTAATTGTTAATTTTTGTTAGATTTATCGAAAAGTCTA
AAAATGACTTACAACAATAACTTGTATATTTTAGGTTTGAGTGAAAAAGA
AACGACAGCCATGTCCCTTGGTCTTGCTCACAGTTTGTCACGATACAAGT
TGAAATTCTCTCCCGATAAAGTTGACACTATGATCGTCCAGGCTATATCA
CTTCTTGATGACTTGGATAAAGAACTCAATAACTATGTCATGAGATGTCG
TGAATGGTATGGCTGGCATTTCCCTGAAATGGGAAAGATTGTCACTGATA
ACCTGGCTTATGCTAAAACTGTCAAACTTATTGGTAAGCATTCTTCGTCG
TTTTTTAATCCAaagcaaaaacttcaaaaactttatatttaaagatttta
tctGCCTTTATCTCAAATTTAATTGATTTGTTCAGATTTGTTTAGATTTC
TTCTGTGCTTGatgttaatgatttttttttaattcaggtTTCAAAACAAA
CACAGCAGACAGTGATCTCTCAAGTATCCTCCCTGAAGAAGTTGAGGAAG
AAGTTAAAGCCGCTGCAGAGATCTCCATGGGTACAGACATTTCTGAGGAA
GATATCGAGAATGTCACTTACCTCTGCGAACAAATCATCCAGATTGCTGA
ATACAGAATGTCTCTGTATGATTATCTGAAGAACAGAATGCAAGCTATCG
CTCCTAACTTGACGGTTATGGTTGGTGAATTAGTTGGGGCTCGTTTGATT
GCTCATGCAGGTAAATATTAAGCAGATATAAAAATCAgatatcgaaaatt
attcagtcgagctGAATCACTAAAACGAGACGGAAtaatttcgatatccg
atttttcacgttgaatatatggtttatTGTTCACCCATTAGCAGGAAAGC
ATTTAAATTTTCCCTATTGTGTATTGCATTCAGTCTTTCTGTACTGTTCT
GTATgatattttcgaacgttttactatCTTATTTAAGgatgtcaatttca
ttgtttttctctttttaattacaaaacgttcgaatttgctttctcttttg
ttaaaaagaactttctttttatctgtttttatatATGTGACACATTTaaa
ttatttgatcaaaaacctgttttctttatgctcgctgctacagaagagat
attttgctgtcggatatctaaaaatatttgatAGTGCGTTTTGCTTAGCG
GCGGACAATAAACCTAATTGTAGTATGTGTTCGAAAGTGAAATCGATAAT
AAGTATAATCATCTTAAAAACCTACTTTTTGAAGCACGTGTCTAATTGAA
TTCATCCtaataatttattttaattCAATACTATACTGTTTGATAGGATC
ACTTCTGAATCTTGCAAAACAACCCGCCTCCACAGTCCAAATCCTTGGTG
CTGAGAAAGCTCTATTCAGGTAAGTTGTTATGGTTCCCCACCAGTCCCCA
CAGAAAGTTCTGTTAATTTCAAACCTCGCTACAAAGTTTTGTGATGGTAT
TGGGAACTCGGGGTTGAATAAATCAAGTAATCTTTATTCTTTTATAGAGC
TTTGAAGACGAAGCATGACACACCAAAATATGGTTTGATTTACCACGCTT
CCTTGGTTGGACAAACAAGCGCCAAAACGAAAGGAAAGGTAGGTTGTTAT
TCTTTCGCTAAATTTCCTTGTTACGTTTCAAcggaaattttaaaatgctt
atgttttggttcaattttaATGATTGGACTagaaaaattgtcgaaaaaat
gtttcgattttttttactttcgcaTCTAGATATCTCGTATGTTGGCAGCG
AAGACCGCATTAGCAATTCGTTACGACGCCCTTGGTGAAGAAATTGACAC
AGAAATGGGAATTCAAAATCGCGCAAAACTCGAAACAAGAATTAGATTCC
TTGAGGAGGGTGGTGTAAGTGGTTTCATTGTTTTGACCCTATTAAAGCTT
TCCCAGATGTTAAAATTCCCTTTtaatttacaaaacaatataTTAGTGGC
TTTTTGACCTACTTAACTTAACGTAACGTTCCTTCTTGCTCCatttttat
tgtgaaaaatcttcccaggaaactttttgaaatatttttccccaACAAGA
TATAGTAATTGCAACTGATTGCAAGATTTATCCCACTCTTGAAAATCGCA
TTAAAACGAGATAAAAGTAAGGCTCTTTCCGATAATGAAACTCTTAAGCT
ATCTGAGTTTTGTCTGAAACCTTTCTTGGCTTTACCTCGAGTTTCAGTCT
GCGATTGGGCTTGTGTCTAGAAATTCACGGGATTTGGgtttagacttaag
acttaggattAATAGAAGACGGAGATTCCGGAAAACGTTTGAGAGTGTCT
GGTCTGGGAATCGGCTTTAGTCTCGAAACTATCAGGAAACCAGATAATTG
GtcataaaaactttgaacaTCCTTAtacttgtaaaaaaattattgaaacc
aTCCTTATCATCCCTTTAATTTCcgttcaaaatattgttttctaGATGAC
AAAGATCAGTGGTACTGGCAATGGAAAAGTTCACAACGCCAAGAAACACA
GCATCAAAAGGTATAGAAGTCACAACTAGCATCATTGATGTTTTGTTTCT
CTTGTGATTCACTTCTTATTGACTCGTCAGTTTATTGTGATTCACAAAGT
TCTTTCTGAGATGCTAGTAGTCTTTGAGAagacaaaatgataaaaaaggt
AACTAAAAGAAATTTATCTTGTGCATTAATTTTGTTGTCAAATTATTGCG
ATTGTAACATCTTAAGAAAGTAGCTTTTAGATTGATTCTTTTACGTTATT
TATACTATGATGAACCTTCTAgatttttgcaaactttttatcaccccttc
aattttttaacattttgccCACTTCAAGCAAAACATGTTCACAATTAACC
AGCTAAATTTTAGCTAGACTTTTTTCCGGTAACCTTTGATTGTGATAAAG
AACTGGAAAAGCATTGTTCTAAATTTCCTGATATTTGAATCTTGTCTATT
CTTAGCGAGGACAACATTCCAGTTTACGACAACGGAATGGATTCAACACT
CGGCAAGAAGCGCAAAGTGAAAGAGGAATCGGACAGCGATGCAGAAGATA
CGAAACCCGTCATCAAAAAGAAGAAGGTCAAGAAAGAACCAGTTGACTCT
GATgaagagatggaggaaaaacctaagaagaaaaagaaagtcaagaagga
ggagcccgaagaagaggaagaagaaacTGGTAAACTTTCTTCTCTCTTGT
CAATGACACGTGACATTTGCTCACACAGTTTCTATGAAGCCTTATACGAA
CGTTTTCCCTCCtaaaaaactgattttcttTCGATTACTGCTTGCGGttg
ttttatttccaaaaatttgaaggTTTTATCGCAATCGGGAATTCTCATTT
ATAATTGAAACCAATCTATATTCACTTcttaatagatcttatcggaggat
tgtttcgggggtattacaatagaaatctcttaggaattcctcgagggaat
tctattgtaatacccctgAAACAATTGCATCGCtgtttcagaaaaatcaa
aaactccgttTGTATCGTTTCCATGTTCGTTCTAGTCAGATTCTAATATC
AAGTTTCTCTTTTCATAGAACCagtagagaaaaagaaaaagaagaagaag
aaggctgccgaacctgaacccgaagaagaagaagaggttTGTTGTTCATT
ACACCGTAtttttgaccgtagccgccaattgtcgTGCGGGCtttttttGC
CCGtgttaccaccctaaaaccgtcccagtctttttttcgcaccttaagac
aatagaaaaaggtgtgtATTGTCATCGTCAATCTCTTTTTTCATCCCATA
TTAAGAACTTTACCTTCGACAAGAGAGCAGCTTAGATTGCTCTGCATAAA
TGCATGCTACTATAAATAACCGTTATATTATGTAGTAGAATGCATAGACC
TGACAAAAGCTGTTATTAAGCATAACTTAAGTTCTTTTATCGCTTCGTGA
AAACCATGTTATGTAAAGACGAGGTGAAGAGAGCTGTATCAAGGCGACAT
TCAAAGAACCGTAAACTAATAAATTCATTGTCTTCTTTTAGGAGGTCGTC
GagaagaaagataagaagaaaaagaaaaaaaagaagaagaccgaagaaTC
CGATTCTGAATGA

Coding sequence (CDS) from alignment at sc0000042_pilon:1427461..1432673+

>XLOC_037564 ID=XLOC_037564|Name=XLOC_037564|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3276bp|location=Sequence derived from alignment at sc0000042_pilon:1427461..1432673+ (Clytia hemisphaerica_ch_hm2_pilon)
atGTTGGTATTATTCGAAACTCCTGCTGGATATGCTGTATTCaagatGTT
GGTATTATTCGAAACTCCTGCTGGATATGCTGTATTCaagcttttaAATG
AGAAGAAACTGGCTGAGGTTGATAACCTCTATAAAGATTTTGAAACTGGA
GATAAAGCCAGCCAAGTcttttaAATGAGAAGAAACTGGCTGAGGTTGAT
AACCTCTATAAAGATTTTGAAACTGGAGATAAAGCCAGCCAAGTggtcaa
attgaaacatttcaaaaaatttgaagataCAACTGAAGCTCTCGCAGggt
caaattgaaacatttcaaaaaatttgaagataCAACTGAAGCTCTCGCAG
CTGCCACTGCATCGGTAGAGGGAAAAATGTCAAAGTcactgaaaaaattg
atgaaaaaggtGGCTTCTAAAGAGGTCACTGAAGAAATGGCAGTTGCTGA
TGCTAAAATCGGAAACATTATCAAACTGCCACTGCATCGGTAGAGGGAAA
AATGTCAAAGTcactgaaaaaattgatgaaaaaggtGGCTTCTAAAGAGG
TCACTGAAGAAATGGCAGTTGCTGATGCTAAAATCGGAAACATTATCAAA
GAAAAATTCGACATCAGCTGTGTTTGCTCTTCTGCTATTCATGAATTGAT
GCGTGGGATCAGATCTCAAATGAACAGCTTAATCACAGGAAAAATTCGAC
ATCAGCTGTGTTTGCTCTTCTGCTATTCATGAATTGATGCGTGGGATCAG
ATCTCAAATGAACAGCTTAATCACAGGTTTGAGTGAAAAAGAAACGACAG
CCATGTCCCTTGGTCTTGCTCACAGTTTGTCACGATACAAGTTGAAATTC
TCTCCCGATAAAGTTGACACTATGATCGTCCAGGCTATATCACTTCTTGA
TGACTTGGATAAAGAACTCAATAACTATGTCATGAGATGTCGTGAATGGT
ATGGCTGGCATTTCCCTGAAATGGGAAAGATTGTCACTGATAACCTGGCT
TATGCTAAAACTGTCAAACTTATTGGTTTGAGTGAAAAAGAAACGACAGC
CATGTCCCTTGGTCTTGCTCACAGTTTGTCACGATACAAGTTGAAATTCT
CTCCCGATAAAGTTGACACTATGATCGTCCAGGCTATATCACTTCTTGAT
GACTTGGATAAAGAACTCAATAACTATGTCATGAGATGTCGTGAATGGTA
TGGCTGGCATTTCCCTGAAATGGGAAAGATTGTCACTGATAACCTGGCTT
ATGCTAAAACTGTCAAACTTATTGgtTTCAAAACAAACACAGCAGACAGT
GATCTCTCAAGTATCCTCCCTGAAGAAGTTGAGGAAGAAGTTAAAGCCGC
TGCAGAGATCTCCATGGGTACAGACATTTCTGAGGAAGATATCGAGAATG
TCACTTACCTCTGCGAACAAATCATCCAGATTGCTGAATACAGAATGTCT
CTGTATGATTATCTGAAGAACAGAATGCAAGCTATCGCTCCTAACTTGAC
GGTTATGGTTGGTGAATTAGTTGGGGCTCGTTTGATTGCTCATGCAGgtT
TCAAAACAAACACAGCAGACAGTGATCTCTCAAGTATCCTCCCTGAAGAA
GTTGAGGAAGAAGTTAAAGCCGCTGCAGAGATCTCCATGGGTACAGACAT
TTCTGAGGAAGATATCGAGAATGTCACTTACCTCTGCGAACAAATCATCC
AGATTGCTGAATACAGAATGTCTCTGTATGATTATCTGAAGAACAGAATG
CAAGCTATCGCTCCTAACTTGACGGTTATGGTTGGTGAATTAGTTGGGGC
TCGTTTGATTGCTCATGCAGGATCACTTCTGAATCTTGCAAAACAACCCG
CCTCCACAGTCCAAATCCTTGGTGCTGAGAAAGCTCTATTCAGGATCACT
TCTGAATCTTGCAAAACAACCCGCCTCCACAGTCCAAATCCTTGGTGCTG
AGAAAGCTCTATTCAGAGCTTTGAAGACGAAGCATGACACACCAAAATAT
GGTTTGATTTACCACGCTTCCTTGGTTGGACAAACAAGCGCCAAAACGAA
AGGAAAGAGCTTTGAAGACGAAGCATGACACACCAAAATATGGTTTGATT
TACCACGCTTCCTTGGTTGGACAAACAAGCGCCAAAACGAAAGGAAAGAT
ATCTCGTATGTTGGCAGCGAAGACCGCATTAGCAATTCGTTACGACGCCC
TTGGTGAAGAAATTGACACAGAAATGGGAATTCAAAATCGCGCAAAACTC
GAAACAAGAATTAGATTCCTTGAGGAGGGTGGTATATCTCGTATGTTGGC
AGCGAAGACCGCATTAGCAATTCGTTACGACGCCCTTGGTGAAGAAATTG
ACACAGAAATGGGAATTCAAAATCGCGCAAAACTCGAAACAAGAATTAGA
TTCCTTGAGGAGGGTGGTATGACAAAGATCAGTGGTACTGGCAATGGAAA
AGTTCACAACGCCAAGAAACACAGCATCAAAAGATGACAAAGATCAGTGG
TACTGGCAATGGAAAAGTTCACAACGCCAAGAAACACAGCATCAAAAGCG
AGGACAACATTCCAGTTTACGACAACGGAATGGATTCAACACTCGGCAAG
AAGCGCAAAGTGAAAGAGGAATCGGACAGCGATGCAGAAGATACGAAACC
CGTCATCAAAAAGAAGAAGGTCAAGAAAGAACCAGTTGACTCTGATgaag
agatggaggaaaaacctaagaagaaaaagaaagtcaagaaggaggagccc
gaagaagaggaagaagaaacTGCGAGGACAACATTCCAGTTTACGACAAC
GGAATGGATTCAACACTCGGCAAGAAGCGCAAAGTGAAAGAGGAATCGGA
CAGCGATGCAGAAGATACGAAACCCGTCATCAAAAAGAAGAAGGTCAAGA
AAGAACCAGTTGACTCTGATgaagagatggaggaaaaacctaagaagaaa
aagaaagtcaagaaggaggagcccgaagaagaggaagaagaaacTGAACC
agtagagaaaaagaaaaagaagaagaagaaggctgccgaacctgaacccg
aagaagaagaagagAACCagtagagaaaaagaaaaagaagaagaagaagg
ctgccgaacctgaacccgaagaagaagaagagGAGGTCGTCGagaagaaa
gataagaagaaaaagaaaaaaaagaagaagaccgaagaaTCCGATTCTGA
ATGAGAGGTCGTCGagaagaaagataagaagaaaaagaaaaaaaagaaga
agaccgaagaaTCCGATTCTGAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_037564XLOC_037564-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000042_pilongenomesc0000042_pilon:1427461..1432673 +
Properties
Property NameValue
Aaloc1567-1638:5142
Aaloc1501-1566:4671
Aaloc1276-1497:4057
Aaloc1210-1272:3546
Aaloc1075-1209:2830
Aaloc985-1074:2599
Aaloc913-981:2399
Aaloc640-909:1540
Aaloc391-636:1137
Aaloc301-387:927
Aaloc178-300:682
Aaloc124-174:474
Aaloc46-120:229
Aaloc1-45:1