TCONS_00015450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015450
Unique NameTCONS_00015450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2131

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015450 ID=TCONS_00015450|Name=TCONS_00015450|organism=Clytia hemisphaerica|type=transcript|length=2131bp
ttttgatttaacaggTATCACATTATCAACATCTGATATTCTAATCTTTC
AAAAAACGAATTTCCAAATGATGAAATTCAATCTTTGGAcgaaaataaaa
tgataaatgaaACTGCAGTTGACACAAGAGGGATCGAAGGGGAGTAATAT
CGTGTGTTGATGGGTTTGAAGGCCGACCTTGTGTTTTCTGCAAGAgcgtt
gaatattttttgaattgaatttgtGGCTATATTTGTGGCATGTTAAAGGA
ATTACCCTACACTAGATATGAACAACCATGACGAAAAACTGGCAACTCTG
ATGAGAGCTCTAAACTTTGTATTCATTGCCAAATGATAATATATAATAct
tttttttcagaaacataAAAATCATGGGCTGCGAGTGGAGTGCAGCCAAC
CATACCTACTTTCAGATTGCCAACCTTTTCCTTGCGTTCACGTACTTCGT
TCCAAATACACTGTCCGGACTTCTATTACTCCGCTTTTTTCTGGGAACGG
CTGGTTTCTTTTTCATATTATGGGCTGGTATCATTCTTTGTTCGCCTGAC
ACACTAGCCTGGAATCTTGTCTTTCTTGCATTCAATTATGGACATGCAGC
CTGGATGCTTTACAAACGAAGAAAAATCCACTTTGTTGAGGAGCATGAGG
TGTTGTATGGTGCGATGTTTGAGCAACTCGGCGTACCACGTTGGCAATAC
AAATGTGTGGCAGATTCGAGTGAAGTGATGGAGTTGGAGAGAGATCACGT
ATATGCACATGAAGACGAAACTGATGGAGAACACATCACCATTCTCACCA
ATGGAAGCTTGCGAGTGATGAAAGCTGGCAATATCATGCATCGTTTGAAA
CCGTATGAATTTTTAGATTCACCAGAATGGATCGCTAGCACCACAGGAAA
TATGGCTGCTCCTGTCACCTTTCAAGTGACGTTGATCTCTGACGGATGTA
CGGTAATCACGTGGAAACGTAGGGATTTGTTACGTGCTCTACGTAGCGAA
CCTCACCTCAAAAACATCTTCGACTCTCTCATTGGTCAAGATGTTGCTAA
GAAACTGTTCAAATCACAAACCAATCCGAGCACAGGATTCAACAGCAGTA
ACCAATCACTGAATGCCACTTCACCAAAAGGTTACGGCTCCACTAAAAAT
TCCACAAATCAATTTGATGTTTACGCTTATAACTCGGAAACAGAATCTTT
GATAGCGAAAGACGAAAAATCTTCTTTGCTGGAAATCAAGactaaataaa
gaaaaatgagcGAAACACTTCAAAAGAAGTCAAGGGTGGTCACGTGTAAT
ACGCAGCAAGAAGTCAGCTACGagaaaagtaaatatttcaTAACTTCTTG
AATTTAATGTCagcgaaaattttcatttttatattacCTTAACAATTTTT
TGTAACTATTTACAATATTCTACAACAAGAAAAgaataattattttaaaa
aatatatataataatattttatacaGCCCAATACAAGCaaagaaaggaaa
aacaaattattCGTAGAACCCTCCAGAAGTGCTTGGAACAGAGTCACTTT
CCTTTTGATCCACAACTTCTGAAAGAATTTCTTCCAAGTTGCGACTACGC
TCCATTTCAAGCGCTACAGCGTCCTTTAATGTTTCATTTTGTTTCTGCAA
CAAACTCATTCGTTCTTTAACCATCTCTTCTTTTACGCGTCGCTGTTCGC
GTGATGCACGCGCGGCCGCGTTGTTTCGCTTTCGTCGTTCCCAATAGCTG
TCATCTTTCATGTGACCCTCAACATGAGTTTTCTTCGTTTTCGAACCCAT
CGGCTTAGGGTTGTAAACATAAcatctttttaacttttgactttttcgat
CCGCGTAGGTTGAATTTTCCATAGTTTCCGTACCTTTTTCTTGCAAAGAA
AGATAATTTATAACCAACAAGAAATCACTCTACCTCGTTCAAAACACTTT
TTACACTACTTTCTTGTTGAAAATATTCCCTGTTACTCttacaaactttt
ttcttgttATCAAGATGAAATATTTATAAGCTAAAGCCTGATGAAAACAC
GTGAATAGAGAAGTTTCTCCCTCTAGAATTACTTGAATCACGTTTCTTAT
ATATCGTTTATCTTTTCATATCATTCAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000211:53518..58279-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015450 ID=TCONS_00015450|Name=TCONS_00015450|organism=Clytia hemisphaerica|type=transcript|length=4762bp|location=Sequence derived from alignment at sc0000211:53518..58279- (Clytia hemisphaerica)
TTTTGATTTAACAGGTATCACATTATCAACATCTGATATTCTAATCTTTC
AAAAAACGAATTTCCAAATGATGAAATTCAATCTTTGGACGAAAATAAAA
TGATAAATGAAACTGCAGTTGACACAAGAGGGATCGAAGGGGAGTAATAT
CGTGTGTTGATGGGTTTGAAGGCCGACCTTGTGTTTTCTGCAAGAGCGTT
GAATATTTTTTGAATTGAATTTGTGGCTATATTTGTGGCATGTTAAAGGA
ATTACCCTACACTAGATATGAACAACCATGACGAAAAACTGGCAACTCTG
ATGAGAGCTCTAAACTTTGTATTCATTGCCAAATGATAATATATAATACT
TTTTTTTCAGAAACATAAAAATCATGGGCTGCGAGTGGAGTGCAGCCAAC
CATACCTACTTTCAGATTGCCAACCTTTTCCTTGCGTTCACGTACTTCGT
TCCAAATACACTGTCCGGACTTCTATTACTCCGCTTTTTTCTGGGAACGG
CTGGTTTCTTTTTCATATTATGGGCTGGTATCATTCTTTGTTCGCCTGAC
ACACTAGCCTGGAATCTTGTCTTTCTTGCATTCAATTATGGACATGCAGC
CTGGATGCTTTACAAACGAAGAAAAATCCACTTTGTTGAGGAGCATGAGG
TTTGTGAAGTTTTTGAATGGCTTTTAAGTAGCATAAGAAATTAGATACAG
TAGAGTAAATCAAATGTTTACCTTAACTCGGACAGGTTTTCTCGTCCCTC
CAGTTAACAATGCCTTATAAACCAATCTTTATAACTCGAAATTTCCTTAA
CCCGAACAAATTTGTGTCCCCCCGTGCATGTTCCAGTTAATGAGTTAACG
AGACTCCACTGTATAATGATACTTCCTTTCAATGTTCACCCCTGTATCCG
TATGTTAAATATTGTATGTTCACTGTATCAGTTTTTGTTTGAATACCTAC
CTAAATTATCTTTTCTCCATTTTTNCCCTGTATCAGTATGTTAAATATTG
TATGTTCACTGTATCAGTTTTTGTTTAACTACCTACCTAAAGATCTTTTC
TCCATTTTTTTCAGGTGTTGTATGGTGCGATGTTTGAGCAACTCGGCGTA
CCACGTTGGCAATACAAATGTGTGGCAGATTCGAGTGAAGTGATGGAGTT
GGAGAGAGATCACGTATATGCACATGAAGACGAAACTGATGGAGAACACA
TCACCATTCTCACCAATGGAAGGTATAGCCGCCCTCTCTCCCTTGAAAAT
ACCATATTACACCCTCTTCTCACAGGTCCGGTAGGGTTTTTTCAGCCAGT
GGGGATAAAAAAACGGACTGAAACTCACTGGGGATTGATATTTCCATTAT
TTTTATGGCTGGGAATTTCAATTCTTTTGTTTTCAAGTCAGAGAATTCAG
TAAGGATGGGAAAAATATACCGGGTGCGCCACAAAAAAGTTTCTGTCTTT
AAAACTAATTTTCTCGAAATCTGAAAATTTTAAAAGAAACATTCCTATTC
CATTAGAAAGGAGAAAGGCAAACTTAAATTTTGATGGGTCGTTTATTAAA
TCCGGTTCATTAGATCGAAAGTTATACTAAATTGAATAAAAAAGTTACTT
TCAGAAAGTGCGCGAAAACGTTAAAAATCGACCTATCAAATTAAACAGAA
GCATAATTACATGATGCATCAGTATTTTCGTTTCAGTCATTAAAAATAAT
AATTAGCTGTCTAAATGACCTTTTGTTGTATAGAGGAAAAATTCATTAAA
ATACATCAAATATGGATTTCGAGGTATAACCAGGCTTACATAGACTTTAT
CCAGTCTAGAACCAAAAATCTGAGGAAAGTTTCGGTAAAAGTAAATTAAA
ATGATTTTGATGAAGATTTTAAACCCTTTCGAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAACGTTTTCGGGCACTTTCTGAAAGTAACTTTTTTATTCAATTT
AGTATAACTTTCGATCTAATGAACCGGATTTAATAAATGACCCATCAAAA
TTTAATTTTGTCTTTCTCCTTTCCAATGGAATATGAATGTTTCTTTTAAA
ATTTTCAGATTTCGAGAAAATTAGTTTTAAAGACAGAAACTTTTTTTTGT
GGCGCACCCGGTAGTAAATGTTTTGCACTGAGGATTGGTTATTTTCAGTG
GGTACAAAAGTTGGAGGTTAATTTTCCACCGGGGATGATGTTTTGGCCAA
TTTTTCAGATGGGAAGGGTTCCCAGTAGTCTGAATCTCCAAACCCTCTTA
CTTGAATGGTGCAACACATGACTTTCCAACAGCAAAATGTTGCTGCTCAA
AATCATTAAATTATTGGACAAGCTTACTTTATCATTGGTTCTTTGCACGT
CACATCCAAAATACAAAAGTTTCTCACCATATACTTCAATGTGATTCAAC
ACCTAAAGACGGTTGAAACGAGTTTTTTTTGAATGGATACTATTAACTGA
GACATCGGGAAACACTTCGACCTGTTACATTGAGGTTTCAAAAGTAAATG
ACAAGAAGGATTGCGTGTTGTCTAAACGCTTCTCTATAAAAATATCCATA
ATGAAATCCGCCAAAAAATTAAGAATATGTTTCAGTGACAGGTTAGTTAT
TTTACGTTATAGCTTGCGAGTGATGAAAGCTGGCAATATCATGCATCGTT
TGAAACCGTATGAATTTTTAGATTCACCAGAATGGATCGCTAGCACCACA
GGAAATATGGCTGCTCCTGTCACCTTTCAAGTATGTGCTGCATCTCCTTA
TCTTTGTACTTTTGTCTAAGAACATTGGTTGGAAAAAAGCGTTTATCTCT
CATAAAAACACCCCTGTCACAGAACCGCTGGGACTCCAGCCCCACTGGAA
AATATTTGGTCTCCGGTGGGAAAAGTAGCCTACAACTTCATCCGCAACTT
GGAAAATGACTTTGATTTCCTCCTCCTAATCAAAAATTCAATGTAAAAAG
TTGCACTCCAAAACCATCTCCACTAGACTCTTCGACGCAAGGAACAATTC
CCATTGGGATTTCAATTGGAAATTTTATCCCCGTTGTGGAAAAAAGTTTC
ACCGGGGTTACGAGACAGGGGTGTCATAGAAATAAAAAAAATGTAATAAT
ATCAGTGTTCACGTGCTCACATCATCCAGATTGCACTTCATCTTTCAGGT
GACGTTGATCTCTGACGGATGTACGGTAATCACGTGGAAACGTAGGGATT
TGTTACGTGCTCTACGTAGCGAACCTCACCTCAAAAACATCTTCGACTCT
CTCATTGGTCAAGATGTTGCTAAGAAACTGTTCAAATCACAAACCAATCC
GAGCACAGGATTCAACAGCAGTAACCAATCACTGAATGCCACTTCACCAA
AAGGTTACGGCTCCACTAAAAATTCCACAAATCAATTTGATGTTTACGCT
TATAACTGTAAGTGAAAGTTTTTGAAAAATTTTCCTTTAAAAATAAGTTT
TTAAGGATTTGATCTCTATCCATTTTTGTATGTGATCTATTTATAGATGC
ATCTGTTCGTGCTTGTATGCACTTTGTGTTGTCAAGACAATCCCAGCGAT
CACAACACTTGCCAATTTCAATTTCTCAGAATTTTTCATTTTAAGTCTTT
CCTTTCTTTTTTTAGCGGAAACAGAATCTTTGATAGCGAAAGACGAAAAA
TCTTCTTTGCTGGAAATCAAGACTAAATAAAGAAAAATGAGCGAAACACT
TCAAAAGAAGTCAAGGGTGGTCACGTGTAATACGCAGCAAGAAGTCAGCT
ACGAGAAAAGTAAATATTTCATAACTTCTTGAATTTAATGTCAGCGAAAA
TTTTCATTTTTATATTACCTTAACAATTTTTTGTAACTATTTACAATATT
CTACAACAAGAAAAGAATAATTATTTTAAAAAATATATATAATAATATTT
TATACAGCCCAATACAAGCAAAGAAAGGAAAAACAAATTATTCGTAGAAC
CCTCCAGAAGTGCTTGGAACAGAGTCACTTTCCTTTTGATCCACAACTTC
TGAAAGAATTTCTTCCAAGTTGCGACTACGCTCCATTTCAAGCGCTACAG
CGTCCTTTAATGTTTCATTTTGTTTCTGCAACAAACTCATTCGTTCTTTA
ACCATCTCTTCTTTTACGCGTCGCTGTTCGCGTGATGCACGCGCGGCCGC
GTTGTTTCGCTTTCGTCGTTCCCAATAGCTGTCATCTTTCATGTGACCCT
CAACATGAGTTTTCTTCGTTTTCGAACCCATCGGCTTAGGGTTGTAAACA
TAACATCTTTTTAACTTTTGACTTTTTCGATCCGCGTAGGTTGAATTTTC
CATAGTTTCCGTACCTTTTTCTTGCAAAGAAAGATAATTTATAACCAACA
AGAAATCACTCTACCTCGTTCAAAACACTTTTTACACTACTTTCTTGTTG
AAAATATTCCCTGTTACTCTTACAAACTTTTTTCTTGTTATCAAGATGAA
ATATTTATAAGCTAAAGCCTGATGAAAACACGTGAATAGAGAAGTTTCTC
CCTCTAGAATTACTTGAATCACGTTTCTTATATATCGTTTATCTTTTCAT
ATCATTCAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008626XLOC_008626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015450-exon-sc0000211-1575043694:57631..58279TCONS_00015450-exon-sc0000211-1575043694:57631..58279Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1575043694:57058..57215TCONS_00015450-exon-sc0000211-1575043694:57058..57215Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1575043694:55350..55467TCONS_00015450-exon-sc0000211-1575043694:55350..55467Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1575043694:54673..54931TCONS_00015450-exon-sc0000211-1575043694:54673..54931Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1575043694:53518..54464TCONS_00015450-exon-sc0000211-1575043694:53518..54464Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1510915933:57631..58279TCONS_00015450-exon-sc0000211-1510915933:57631..58279Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1510915933:57058..57215TCONS_00015450-exon-sc0000211-1510915933:57058..57215Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1510915933:55350..55467TCONS_00015450-exon-sc0000211-1510915933:55350..55467Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1510915933:54673..54931TCONS_00015450-exon-sc0000211-1510915933:54673..54931Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1510915933:53518..54464TCONS_00015450-exon-sc0000211-1510915933:53518..54464Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1491911889:57631..58279TCONS_00015450-exon-sc0000211-1491911889:57631..58279Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1491911889:57058..57215TCONS_00015450-exon-sc0000211-1491911889:57058..57215Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1491911889:55350..55467TCONS_00015450-exon-sc0000211-1491911889:55350..55467Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1491911889:54673..54931TCONS_00015450-exon-sc0000211-1491911889:54673..54931Clytia hemisphaericaexon
TCONS_00015450-exon-sc0000211-1491911889:53518..54464TCONS_00015450-exon-sc0000211-1491911889:53518..54464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:53518..58279 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.178805	0	0.351729	0	0	0	0	0.166139	0.173852	0.656496	0	0	0	0.182253	0.162656	0.232761	0.745226	0.188409	0.190354
Blast
[Close]
BLAST of TCONS_00015450 vs. Swiss-Prot (Human)
Match: POPD3 (Popeye domain-containing protein 3 OS=Homo sapiens GN=POPDC3 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.015e-31
Identity = 60/181 (33.15%), Postives = 101/181 (55.80%), Query Frame = 2 
Query:  521 WAGIILCSPDTLAWNLVFLAFNYGHAAWMLYKRRKIHFVEEHEVLYGAMFEQLGVPRWQYKCVADSSEVMELERDHVYAHEDETDGEHITILTNGSLRVMKAGNIMHRLKPYEFLDSPEWIASTTGNMAAPVTFQVTLISD-GCTVITWKRRDLLRALRSEPHLKNIFDSLIGQDVAKKLF 1060
            WA + +C+ D  +WN V     +     + Y+ R I F  E +VLY ++F+ LG+    ++ +A SSEV+ LE++H YA + +T  + +++L +G +RV   G  +H + P +FLDSPEW +           FQVTL ++  C  ++W+R+ L        ++  +F  LIG D+A KL+
Sbjct:   67 WAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLGISLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGRIRVTVDGEFLHYIFPLQFLDSPEWDSLRPTEEG---IFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIADKLY 244
The following BLAST results are available for this feature:
BLAST of TCONS_00015450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POPD37.015e-3133.15Popeye domain-containing protein 3 OS=Homo sapiens... [more]
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