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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000299_pilon:336318..340196+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_034935 ID=XLOC_034935|Name=XLOC_034935|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3879bp|location=Sequence derived from alignment at sc0000299_pilon:336318..340196+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCATTACTTCCGATTCCAAACCGCATTGCATTCATTTTGAGCACAAT
CTTTGCACTAGTGCATTATGGGGAAGCTTTGAACGATAATTCAACAACAA
cattaaaagaaaatgatatttGGTGTGGAGGGAAACGGATCATCTATAAA
TCACAAGGTCAACTTGATGTTGATTTATCCATCCTCTTAAACAGTTCAAT
TGCTGTTACCAATCCTCCGTATGAATGTCATTTCAAGATACGTGCCAATA
CACCGATATCATTTCAATGGTTTAAGTTTTCCAGGAATTTTACTGGCAAG
TATGGCGATTGTAATCAAACCAATAACATTGTCAAAGTTTGGACAGGGTA
TGTATCTATATTCACTATATTGCATTGTCCatcaaaatgtcattttgtta
agggctctgaccatagtgaatttttcataatcgccgtgtttaaaatgtgt
tttctgactgatgtaaccaaccaaactatggcatgttatacattttctgt
tagacaaactattcctgaatctgaaaattcaaaaattgcaatgaaaaaat
ttgatgaagaagaaaatgaagacttttgtgaggaagaatatttcaacttt
gaagagcttagtttcggcgaagaaaaaacattttgaaaaatttttcgcag
tagatggtgtatctttcaCCAAacgataaaaatttttgcggaaaattttt
gtaaatgcttctttgtctcgaaatcttcaaaatagtggtttttcatcaat
ttttcatctggattttgcttaaaaaaacaatcataatttttgacaaatct
ttttagaaaaattttccgcaaaatttaaaatagttcaattctttgcggac
aatgtaaagaaattttgaaacaaaaaggttaattacccattaaaacttag
cgctttttataaaagaaggtgatgcaacatattattaacgtctttttaaa
gttcataacgtcatttctgcaattaaattcttaattactctgaagggatt
tgattaaaaagcaatttataaaggcaattctttgttaaaagtgttaaaga
acctaaaacataacttttatgttcaaatactaaaatcaattttccgacta
tggtcagagcccttaagcttAACTTCGGGAGGGGTACTAAAAATGGGTGT
TGGTATGtgtggacggtaagggtcggtttttatCACCTTTCAAGGTATCT
cgaagggttacaaaaatcagaaaattttaaattggtATTGGTAGTTTGTA
TTTGAAATTACCATTTTGGGTCTGATTTACATGAATTGTATATATATTGT
ATATTGTGTTTTTTGTCTCCTTTTCAGAGAGATTTTGGAGACTAAAGTGG
AAAAAACGCTGAAATTTAATAAACCAATAGACTTTTTGGAAGATATTTTT
TCAACGAATGAATAAATTTGTTTTACTCGATTGTGTCCTTATCATATGTT
TTAACATTAAAGCAGTTTCTTTCCCCACAATTTCGAGCCTGGCAAATAAC
TTTCATTGGGTCCGTTTGTAGACAGATTTTTCCGGTATAACAGAGAATTC
TCGCTAATATTTTCTGATACTTGATATTCGACTGTACCATATTTATCTTC
TTTCTATTTTATATACCATAATGAAACGGGATTTGACTTTCTAAATTTCC
CCTTTCTTTTGTCAAAGCATGACAGCCATCTTGTCGTcaacatttcaaaa
caaaaaaatgtcatcTCCATGAACAAGAAAtctctcttcttcttttcttc
actctttgttttcttattatttttcgtgagtcattctttcAACATAACAT
TTCTAGAATATTTTCTCTTTAAGATATTAATCACCATATCAAGTCAAAAT
ATGTCAACTTTTTGGGTGCGTTCTTTTTAACTGTAGAAATCTCTTTATAC
AAATTTCACTTTATTTCCTTCCCTTAGATGTCAAGACCGCGAAGAACATT
GTTTCACCAACTACATGCAATCGAACTATGAACTTCACGCGTCTGATGGA
TGTTACGACATCGAGCTATCCACTGATATTAAGGACAAAATATTTCTCGC
CAACTTTAAACCAGCGTCGTTCAATACTGCCAGTAGTAAGTTTAGGTCAC
CATAACTTTTAAATTACTCGATACTTTGATTAAGGCTCTAATAAAATGAG
ACAGACTTTTAGCTCAATAAATGAATTTCTGGAAGTCTAGCAAAGCAGTG
TTGTTATGAGAATGTGtttttatgagaatatttttttattataagcttAA
TAAATATCTTAGaaaatagtagggggaattttgttcgattttttgaaatc
gctcgattgttttgttagaagcacttgttatacatttttggaaacttcaa
ccttagagaaatcgaaattaccatgtttccaatttttttttcggacactt
tggtgtgattttcggacaaatatgacggtctcaggcaaaaatcatagtga
gaaaaattaatgaaaattttagcttgagaaaacggagacctgttgtatat
ttttggaaagctctcaaaaaaattaagattagagatatattgcaagtata
tgTGAATtatgtacctaactcgagatattaacccttgaaaaccgtgtttt
tcagccagaaacagctgttttgtccagtttttgcgctttttgaagctcat
tatctcgagttaggtactgaaatcacctatacctGCAATATATccctaat
cctaattttttgagagttttcaaaaaatatacaacaggtctccgttttct
caagctaaaattttcattaatttttaaccctatgatttttgcctgagacc
gtcatatttgtccgaaaatcacaccaaagtgtccgaaaaaaaattggaaa
catcgtaatttcgatttctCTAAGGTTGcagtttccaaaaatgtataaca
agtgcttctaacaaaacaaccgagcgattttacaaaatgccctctactaa
aaTTAACAAATACTTTTCCCATAGCTCCTTACGATGATGACTCAACGAGC
AGTTCGTTCTCCAATCATCTTGTCTTTATCATAATCGGCCCCATCGTCTT
TCTGATCGCAGTCATCGGAATCACATTCGCTTTGATGCGTCAAGCACAAC
ATCGCCGATTAGTGGACACACTACAAGTGGAACAAAACCTCATCTCACAA
CAAACTTCATCAAGTAGTGAAGCTCAAGAGGAGTGTCCAAACTCGCCCAC
TTCCTTACTACAAAAAACTGAACGCCAGCTTTCAAACGACAGCAAAGCAA
GATACTCGCAACGCTTCTCACAACAATTCCAGGAAGGCATGACAGATCAC
TATTATTACCCTGCTAAACGAATTTCCTATATTTCTAATCGCTATTCAAG
AAATATCCCGGCTGAGTATCGAGTATCGCGCGTTCGTTGCTCGCGCTCAT
ATTCTGCAGGTGAATCGTCAATGCCGCGACCACCAGGTGAGATCGCGCGT
CGATCAATTGCTAGAAGATCACCAACGCACTCTGCTGATTGGAGCAATAA
AGTCCAACTCGTTGACGTGCATAGTCCGAAAGTTCAACACCCTCAAAATG
TTGTACATCAATTGCAACATCAAACTTCATACCATCAACAACAACCTATT
CTTCATTCTCAACAATCAGTTCAACATCTGCAACACCAAACTTCTTATCA
ACAACAACTTAGCAACGATCCTCAACAATTGCAGCACCAAAACAGTCAAT
TCCAACATCAAACATCACATGATCAACCACAGCCAAACACCAATTATGAT
CCACCGCTCCAACCACCGCTAACACCTTCATCAACGATGATTTCTCCACC
TCAAATTTCACCAACCACTATCCAAGAAGAGGAAGAAGCTCCACCATATG
AAACAGTTATTGCACAAGGTAACGCTGAT Coding sequence (CDS) from alignment at sc0000299_pilon:336318..340196+ >XLOC_034935 ID=XLOC_034935|Name=XLOC_034935|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2820bp|location=Sequence derived from alignment at sc0000299_pilon:336318..340196+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCATTACTTCCGATTCCAAACCGCATTGCATTCATTTTGAGCACAAT
CTTTGCACTAGTGCATTATGGGGAAGCTTTGAACGATAATTCAACAACAA
cattaaaagaaaatgatatttGGTGTGGAGGGAAACGGATCATCTATAAA
TCACAAGGTCAACTTGATGTTGATTTATCCATCCTCTTAAACAGTTCAAT
TGCTGTTACCAATCCTCCGTATGAATGTCATTTCAAGATACGTGCCAATA
CACCGATATCATTTCAATGGTTTAAGTTTTCCAGGAATTTTACTGGCAAG
TATGGCGATTGTAATCAAACCAATAACATTGTCAAAGTTTGGACAGGATG
GCATTACTTCCGATTCCAAACCGCATTGCATTCATTTTGAGCACAATCTT
TGCACTAGTGCATTATGGGGAAGCTTTGAACGATAATTCAACAACAAcat
taaaagaaaatgatatttGGTGTGGAGGGAAACGGATCATCTATAAATCA
CAAGGTCAACTTGATGTTGATTTATCCATCCTCTTAAACAGTTCAATTGC
TGTTACCAATCCTCCGTATGAATGTCATTTCAAGATACGTGCCAATACAC
CGATATCATTTCAATGGTTTAAGTTTTCCAGGAATTTTACTGGCAAGTAT
GGCGATTGTAATCAAACCAATAACATTGTCAAAGTTTGGACAGGATGTCA
AGACCGCGAAGAACATTGTTTCACCAACTACATGCAATCGAACTATGAAC
TTCACGCGTCTGATGGATGTTACGACATCGAGCTATCCACTGATATTAAG
GACAAAATATTTCTCGCCAACTTTAAACCAGCGTCGTTCAATACTGCCAG
TAATGTCAAGACCGCGAAGAACATTGTTTCACCAACTACATGCAATCGAA
CTATGAACTTCACGCGTCTGATGGATGTTACGACATCGAGCTATCCACTG
ATATTAAGGACAAAATATTTCTCGCCAACTTTAAACCAGCGTCGTTCAAT
ACTGCCAGTACTCCTTACGATGATGACTCAACGAGCAGTTCGTTCTCCAA
TCATCTTGTCTTTATCATAATCGGCCCCATCGTCTTTCTGATCGCAGTCA
TCGGAATCACATTCGCTTTGATGCGTCAAGCACAACATCGCCGATTAGTG
GACACACTACAAGTGGAACAAAACCTCATCTCACAACAAACTTCATCAAG
TAGTGAAGCTCAAGAGGAGTGTCCAAACTCGCCCACTTCCTTACTACAAA
AAACTGAACGCCAGCTTTCAAACGACAGCAAAGCAAGATACTCGCAACGC
TTCTCACAACAATTCCAGGAAGGCATGACAGATCACTATTATTACCCTGC
TAAACGAATTTCCTATATTTCTAATCGCTATTCAAGAAATATCCCGGCTG
AGTATCGAGTATCGCGCGTTCGTTGCTCGCGCTCATATTCTGCAGGTGAA
TCGTCAATGCCGCGACCACCAGGTGAGATCGCGCGTCGATCAATTGCTAG
AAGATCACCAACGCACTCTGCTGATTGGAGCAATAAAGTCCAACTCGTTG
ACGTGCATAGTCCGAAAGTTCAACACCCTCAAAATGTTGTACATCAATTG
CAACATCAAACTTCATACCATCAACAACAACCTATTCTTCATTCTCAACA
ATCAGTTCAACATCTGCAACACCAAACTTCTTATCAACAACAACTTAGCA
ACGATCCTCAACAATTGCAGCACCAAAACAGTCAATTCCAACATCAAACA
TCACATGATCAACCACAGCCAAACACCAATTATGATCCACCGCTCCAACC
ACCGCTAACACCTTCATCAACGATGATTTCTCCACCTCAAATTTCACCAA
CCACTATCCAAGAAGAGGAAGAAGCTCCACCATATGAAACAGTTATTGCA
CAAGGTAACGCTGATCTCCTTACGATGATGACTCAACGAGCAGTTCGTTC
TCCAATCATCTTGTCTTTATCATAATCGGCCCCATCGTCTTTCTGATCGC
AGTCATCGGAATCACATTCGCTTTGATGCGTCAAGCACAACATCGCCGAT
TAGTGGACACACTACAAGTGGAACAAAACCTCATCTCACAACAAACTTCA
TCAAGTAGTGAAGCTCAAGAGGAGTGTCCAAACTCGCCCACTTCCTTACT
ACAAAAAACTGAACGCCAGCTTTCAAACGACAGCAAAGCAAGATACTCGC
AACGCTTCTCACAACAATTCCAGGAAGGCATGACAGATCACTATTATTAC
CCTGCTAAACGAATTTCCTATATTTCTAATCGCTATTCAAGAAATATCCC
GGCTGAGTATCGAGTATCGCGCGTTCGTTGCTCGCGCTCATATTCTGCAG
GTGAATCGTCAATGCCGCGACCACCAGGTGAGATCGCGCGTCGATCAATT
GCTAGAAGATCACCAACGCACTCTGCTGATTGGAGCAATAAAGTCCAACT
CGTTGACGTGCATAGTCCGAAAGTTCAACACCCTCAAAATGTTGTACATC
AATTGCAACATCAAACTTCATACCATCAACAACAACCTATTCTTCATTCT
CAACAATCAGTTCAACATCTGCAACACCAAACTTCTTATCAACAACAACT
TAGCAACGATCCTCAACAATTGCAGCACCAAAACAGTCAATTCCAACATC
AAACATCACATGATCAACCACAGCCAAACACCAATTATGATCCACCGCTC
CAACCACCGCTAACACCTTCATCAACGATGATTTCTCCACCTCAAATTTC
ACCAACCACTATCCAAGAAGAGGAAGAAGCTCCACCATATGAAACAGTTA
TTGCACAAGGTAACGCTGAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000299_pilon | genome | sc0000299_pilon:336318..340196 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 508-1410:2977 |
| Aaloc | 349-504:1929 |
| Aaloc | 1-345:1 |
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