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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000098_pilon:539440..544103+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_019217 ID=XLOC_019217|Name=XLOC_019217|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4664bp|location=Sequence derived from alignment at sc0000098_pilon:539440..544103+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGATCATCACTCACATTGATCAAGTTCTCCCCCTCATTGGTGAAAT
TGGATTATTCCAAATCTTGTACATTTGTATATTATGTCTTATCACGATTC
CAGCGACTTTCCAAACACTCATTATCTACTTCGTGGCTGATAATCCAGGC
TGGCACTGTGTGGCCAACAGCACAACGTGCACGTTAAAAGAGCCAGTCAT
CACGTCCACAATGACGGACCTGTACAAAACGAGGTGTAGTTTTTTGAGAT
CAGAGTGGGAGTACGTGGAAGAAGACCTTTATTCTGTTGTAACTGAGGTA
AGAATACAAGCTGTTAACCGGATAAAgctaagaacaatctgagcctcggG
TTTCAGAGTTTTATAAGAGAAGAGTACAGTTTTTATACGCCTTTAtatca
agaaattttgtaaGTTTTTGGTTGGTTAGTCTATCTCAACATAGCCTTGA
AACTTTTATGTTAATTTGGGCAAATACTTTATGGGCAGTAAGACAAGACT
TATGTAAAGATTACGCAGTACTATTTTATACAAATTATTATATAACTTAA
CCCAATATGTTCACTTTGCAAGAAAGACCATTGTAtccctttcttttttt
cagtttgatTTATCATGCAAACGTGAGCATTTGATTTATGTTTCCAAGTC
CATGTTCTTCGCTGGAATGGCCGTTGGTGCTGTTGCTATGGGGTTCCTTG
GTGATAAGTGAGTTTGCATTATGGTGTTTTTAGAGGAATAGACGATAAGG
ACACGCCTATGAATTCAATTATTTTACTCTCCAACTAATGGACTTTTAAC
ATTCgtgatttgattgcgttcgattgaaatcatagtgtcctccagggttt
gttccccccatcaaattcttgatttttttaaatctcccccctcttttttt
ccccctatgacttttcagttttttagtttcccccctcttttttgctttcc
cccagaaaattctgaaaatatcagttccccccatatacccgtataaattt
ctcaaatttcaacctaacacaaacgtaaaattttgcttcaaaaggaatac
tagacaaaatagaacgaaaaatTGGTTAAtctttcaatcatgatctaatc
acatgatatcatgtggactgacctttgttgctgagataaaattgaagtga
tttcacacttccccccaccaaatttgccaactttcgatgttttcccccct
ctttttttccccccctttacttttcaaatttttattttttcccctcaccc
tttcAAAATTGGAACATTggttccccccccccccttaaggggggaggaca
ctatggaaATTCCCTGGCTTTAACAATAAAATCCAAAAACGCTTGAAATA
GTGTCTTTCAATTCAAAACCTTTGAGGGGTTTACACAGATATAAGCTTCA
TAAAATAAACCCTGTAGAAAGTCAAAATCTTCGACccgatttttctgaaa
tttggtaTCCTAATGAGACCGGTACTATATCCACCGCGTACCACTTAAAA
ACTCccattaaaaaatggcaaatataattgagtttcagatttcaaatacA
ACTCATTGGATAGTGAACGTATATTAGTTCTCTTTGCTTGTTTCAGGAGT
GCAATATGTTTTtacttcaaaaatattattagcGTTCaaatataactttt
gttttcaaggtaTGGTCGAAGTAAAGTAATGAAGCCTGCTACGATCATCT
CCCTCCTCATTGCTTTCCTAAGTGCGTTTTCACCAAACTTCTGGGTCTTC
GCTATCGGCCGCTTCCTACTCGGCCTCTTAGCGCCAGGTACCGTGGTCAT
GTTTTTCGTTGTAACATCAGAGATGACAGGACCGCGTTATCGGCCCCTTG
CTGGTATCATTCTATGGTTTTTCTTCACGATTGGGTTGGTGATTCTCGGT
CTTGTGGCGATGAGTGTTCCAACGTGGAAAATGTTGATGGTTTATTCGAC
AGCTCCTTATTTTGTTTTGCTCATTTTCATCTTGTAAGTTGCCTTCTTGT
TTGTAAGTTTAGATTGCCTAACAATTCTACTAGTGGGGCTTTTAGAagta
ttttgattgtttttaccTATATTATTTACCTGTCTTCTTTCTGACTTAGC
TCTCTTTGAACTGAACGGATTTTAAGGAGGATCGAATCGAAAGCCACTGC
TTTGCGGCACCGTTGCCTTAGGCCACTCTTTCTTTACATAAAGCCCAAGA
AATTAATACTCCGGATAGTGACAAGATATTGAAATTCTTTCCTTTCTTTC
AGTTTTCTTCCCGAGTCTTTGCGCTGGTTATACGTCAACAACCAGGTGCA
AGAAGCCACCAAACTCATCAATAAGATTGCTCGCATTAATGGCAAACCTA
AACCAAAGATTTATCTGACACCGCCCAAACCTCTACACGACAAAGTCAGC
CCTCTCTTGTTGTTCAGTTCAGCAGAAATGTGTTTGAAATCACTAAATAT
CGGGTTTGCTTGGTGAGTTTGTATTATAATTCCGAAAAGTAAACAGGAGA
ATTCACGTTTGTATtgtaatttcaaaaacaaaaaaggggaATGCTGATTC
ATATCATCCACAAATATCTCTTTTAATGAATTTCATAAAGCCGACACTTA
TCGtgttactttgaataaacgcccccttcttttaaacacccCCTCGAACA
AACGGCCctcctaaaatccaaaaatccaaaaaaattaataagcgtccggg
gcgtttatttgaaataataagGTACATCACCCGGTAAACTCGAGTGTAGA
GAGTTAATCTTCGTGACTGAAAAgttgtattattattttttttttaagta
tggttaaaagtggaaaaattgaattgtttcttctttcaattttgaaggTT
GGTCAATGGTCTTGTTTACTATGGAGTATCATTATCAGCTAAAGATTTTA
CTGGAAATTTCCATCGCGATTTCATTTTGTCGAGTCTTGTAGAATTTCCT
GCTGCTGTCATCGCTGTTTTGGCTTCAATGTAGTAAGAAATCTTTTTCTT
GATAGAAACTTGTTTTGATGACATCGGTGGATGCGCTTCTAGCTGTGGGA
GAGACTTTTGCAGTTCTTAGAGAATTGAATTTACACgacaaaaacttgat
ttttaggaaaattatattttttgtgaGATTAAACTTTTGCGAATTAGGTT
TTCAGAATATTTCGCGGAAATTGCttttgcgaaagtttcttcccctAATG
TACCTAAGCTAAGTTATTTAAAGGAATGAACAGGATTTTCTTAATCTTTA
AGTCACGTGATCGAGAGTCAACTGTTGTATGTATTCACGTTTGACCATTT
ATAACTTTGTGAATTTTACCATGGTTTTTAGTCTTGGTCGTAAGAGAACG
ACACAGATCCCCATGATATTGGGTGGATTGTGTTGTGCTTTGGTGGTCGC
TATTGATGAAAAGACTGAAGACAAACGTAAGTCACAATCTTCTAATATCT
ACAGCCGGACAGAGCTGTGGACAAAGATTACAGTTTGGAATCGAACTAGA
ATCAGGATATGCCTTGGAAATTTTAGTCACTATTTTATCCTACCAAATCA
ATTTGTTTTAGATGATCGAACAGATACGTAGAACGCCTGATAAGTAAATT
ACAATATTACAATTCTTTTTTCTCAGATTTGATCAATGTGCGATTAACGT
TAGGCctgtttggtaaatttttcaTCACACTTgcttatgacgtcatttat
ACATGGACTGTTGAGCTTTACCCTACGCAAATCAGGTGAGAAATAAACTT
AACAGAAGAAAAGATTGCATTAGAGGTGTTGAGGAGTTCAACTGTTTGAA
TCTAGAGGACAACAAAGACCCCCGCTCGTTCAAAGTCATCCTCAATTTAA
TACTCTTTTGTACCAAATAGGGCATACAAACCATTTCTAGGATATCCAAT
CAAGCTTTCTGAAAGTTAACCAGGATTTGTCTGTCTGACTCAAGTTTCTT
CGAATCTGATAGCGTTAAGACAGGTTCTACCTAAACGTCCCCTTTTCAAT
TATTTGAGAACTTCTAAAAGACATTAAACGTTAAATTATTCCTTTATCGA
TGtttctaaaccaatcaaaatacgaAGGCAGAAATACGCGCTCCCTTTGC
CCTAGGCTGattgcatccactaacggatttgtGCTCTTTAATATtctata
ctacctgcggttttgtagaggtctgcgattcagactaccttTGCCCTGGC
GATAAGGGCATTTTGctgaatcaatcaatcaatcaatcaatcaatcaatc
aatcgtcagtcaaattttaataaaattataataatGGTAACTCCAATTAC
CATCAATTGATatcttaaaaaaatgaaaactttttacatATACAGGACTG
AAGCTATGGGTTTTGTTCAGATTACAAGCCGGCTGGGCGCCATGTTGTCA
CCTTGGGTGGTTGATGGTTTAGGAACAGTCAAAGTATGGGCGCCATTTGT
ACTGATGGGCGTTCTTTCAGTTCTTGTGGGCGTCTTCTTACATTTCCTCC
CTGAAACGAAAGATAAAAAGACAGCGGAATTTCTTGAGAATGATGTAAAA
CAAGAACAAGGGAAGTTCGGACTcccttcttcttcttcgaaaAGGAAAAA
GAGACCTGATGCACAGAAATTATCCTTGGTCAGAGAAGAAGACGAAGAAG
ATATCGAAGCTTGA Coding sequence (CDS) from alignment at sc0000098_pilon:539440..544103+ >XLOC_019217 ID=XLOC_019217|Name=XLOC_019217|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3186bp|location=Sequence derived from alignment at sc0000098_pilon:539440..544103+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGATCATCACTCACATTGATCAAGTTCTCCCCCTCATTGGTGAAAT
TGGATTATTCCAAATCTTGTACATTTGTATATTATGTCTTATCACGATTC
CAGCGACTTTCCAAACACTCATTATCTACTTCGTGGCTGATAATCCAGGC
TGGCACTGTGTGGCCAACAGCACAACGTGCACGTTAAAAGAGCCAGTCAT
CACGTCCACAATGACGGACCTGTACAAAACGAGGTGTAGTTTTTTGAGAT
CAGAGTGGGAGTACGTGGAAGAAGACCTTTATTCTGTTGTAACTGAGATG
GAGATCATCACTCACATTGATCAAGTTCTCCCCCTCATTGGTGAAATTGG
ATTATTCCAAATCTTGTACATTTGTATATTATGTCTTATCACGATTCCAG
CGACTTTCCAAACACTCATTATCTACTTCGTGGCTGATAATCCAGGCTGG
CACTGTGTGGCCAACAGCACAACGTGCACGTTAAAAGAGCCAGTCATCAC
GTCCACAATGACGGACCTGTACAAAACGAGGTGTAGTTTTTTGAGATCAG
AGTGGGAGTACGTGGAAGAAGACCTTTATTCTGTTGTAACTGAGtttgat
TTATCATGCAAACGTGAGCATTTGATTTATGTTTCCAAGTCCATGTTCTT
CGCTGGAATGGCCGTTGGTGCTGTTGCTATGGGGTTCCTTGGTGATAAtt
tgatTTATCATGCAAACGTGAGCATTTGATTTATGTTTCCAAGTCCATGT
TCTTCGCTGGAATGGCCGTTGGTGCTGTTGCTATGGGGTTCCTTGGTGAT
AAgtaTGGTCGAAGTAAAGTAATGAAGCCTGCTACGATCATCTCCCTCCT
CATTGCTTTCCTAAGTGCGTTTTCACCAAACTTCTGGGTCTTCGCTATCG
GCCGCTTCCTACTCGGCCTCTTAGCGCCAGGTACCGTGGTCATGTTTTTC
GTTGTAACATCAGAGATGACAGGACCGCGTTATCGGCCCCTTGCTGGTAT
CATTCTATGGTTTTTCTTCACGATTGGGTTGGTGATTCTCGGTCTTGTGG
CGATGAGTGTTCCAACGTGGAAAATGTTGATGGTTTATTCGACAGCTCCT
TATTTTGTTTTGCTCATTTTCATCTTgtaTGGTCGAAGTAAAGTAATGAA
GCCTGCTACGATCATCTCCCTCCTCATTGCTTTCCTAAGTGCGTTTTCAC
CAAACTTCTGGGTCTTCGCTATCGGCCGCTTCCTACTCGGCCTCTTAGCG
CCAGGTACCGTGGTCATGTTTTTCGTTGTAACATCAGAGATGACAGGACC
GCGTTATCGGCCCCTTGCTGGTATCATTCTATGGTTTTTCTTCACGATTG
GGTTGGTGATTCTCGGTCTTGTGGCGATGAGTGTTCCAACGTGGAAAATG
TTGATGGTTTATTCGACAGCTCCTTATTTTGTTTTGCTCATTTTCATCTT
TTTTCTTCCCGAGTCTTTGCGCTGGTTATACGTCAACAACCAGGTGCAAG
AAGCCACCAAACTCATCAATAAGATTGCTCGCATTAATGGCAAACCTAAA
CCAAAGATTTATCTGACACCGCCCAAACCTCTACACGACAAAGTCAGCCC
TCTCTTGTTGTTCAGTTCAGCAGAAATGTGTTTGAAATCACTAAATATCG
GGTTTGCTTGTTTTCTTCCCGAGTCTTTGCGCTGGTTATACGTCAACAAC
CAGGTGCAAGAAGCCACCAAACTCATCAATAAGATTGCTCGCATTAATGG
CAAACCTAAACCAAAGATTTATCTGACACCGCCCAAACCTCTACACGACA
AAGTCAGCCCTCTCTTGTTGTTCAGTTCAGCAGAAATGTGTTTGAAATCA
CTAAATATCGGGTTTGCTTGgTTGGTCAATGGTCTTGTTTACTATGGAGT
ATCATTATCAGCTAAAGATTTTACTGGAAATTTCCATCGCGATTTCATTT
TGTCGAGTCTTGTAGAATTTCCTGCTGCTGTCATCGCTGTTTTGGCTTCA
ATGTAgTTGGTCAATGGTCTTGTTTACTATGGAGTATCATTATCAGCTAA
AGATTTTACTGGAAATTTCCATCGCGATTTCATTTTGTCGAGTCTTGTAG
AATTTCCTGCTGCTGTCATCGCTGTTTTGGCTTCAATGTATCTTGGTCGT
AAGAGAACGACACAGATCCCCATGATATTGGGTGGATTGTGTTGTGCTTT
GGTGGTCGCTATTGATGAAAAGACTGAAGACAAACTCTTGGTCGTAAGAG
AACGACACAGATCCCCATGATATTGGGTGGATTGTGTTGTGCTTTGGTGG
TCGCTATTGATGAAAAGACTGAAGACAAACATTTGATCAATGTGCGATTA
ACGTTAGGCctgtttggtaaatttttcaTCACACTTgcttatgacgtcat
ttatACATGGACTGTTGAGCTTTACCCTACGCAAATCAGATTTGATCAAT
GTGCGATTAACGTTAGGCctgtttggtaaatttttcaTCACACTTgctta
tgacgtcatttatACATGGACTGTTGAGCTTTACCCTACGCAAATCAGGA
CTGAAGCTATGGGTTTTGTTCAGATTACAAGCCGGCTGGGCGCCATGTTG
TCACCTTGGGTGGTTGATGGTTTAGGAACAGTCAAAGTATGGGCGCCATT
TGTACTGATGGGCGTTCTTTCAGTTCTTGTGGGCGTCTTCTTACATTTCC
TCCCTGAAACGAAAGATAAAAAGACAGCGGAATTTCTTGAGAATGATGTA
AAACAAGAACAAGGGAAGTTCGGACTcccttcttcttcttcgaaaAGGAA
AAAGAGACCTGATGCACAGAAATTATCCTTGGTCAGAGAAGAAGACGAAG
AAGATATCGAAGCTTGAGACTGAAGCTATGGGTTTTGTTCAGATTACAAG
CCGGCTGGGCGCCATGTTGTCACCTTGGGTGGTTGATGGTTTAGGAACAG
TCAAAGTATGGGCGCCATTTGTACTGATGGGCGTTCTTTCAGTTCTTGTG
GGCGTCTTCTTACATTTCCTCCCTGAAACGAAAGATAAAAAGACAGCGGA
ATTTCTTGAGAATGATGTAAAACAAGAACAAGGGAAGTTCGGACTccctt
cttcttcttcgaaaAGGAAAAAGAGACCTGATGCACAGAAATTATCCTTG
GTCAGAGAAGAAGACGAAGAAGATATCGAAGCTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098_pilon | genome | sc0000098_pilon:539440..544103 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1276-1593:4347 |
| Aaloc | 1168-1272:3629 |
| Aaloc | 1072-1164:3333 |
| Aaloc | 937-1068:2849 |
| Aaloc | 727-933:2254 |
| Aaloc | 403-723:1661 |
| Aaloc | 298-399:604 |
| Aaloc | 1-297:1 |
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