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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000023_pilon:576970..582160+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041087 ID=XLOC_041087|Name=XLOC_041087|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5191bp|location=Sequence derived from alignment at sc0000023_pilon:576970..582160+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTACTgagaaaaatgatttatttgaaACCTATGGTGCTAGTCAAAG
GTACTATTATGACTTGAAAGATGAAGAAACCAATCATATTCAACATTATA
ATCAAAAGGAAAAACACAAGGGATTTGCGAACAAAATAAAGGAGACTTTC
AAGGTGATTATTATATGTGAAATTATTATAAAGATTCATAAGTTTGAAAA
GTTACGATTCTGATTCTAAGAGCTCTGATTCTTGAGCTGACTTCTCATAT
TATCTCAAGCCAAAATCTCTATTAGACATTTGTTTATTAGCCCTTTTGGA
AACATTATTttaagcttcaaaattttttgtcacGTGTTCGTAttgattca
ttttatttttctacttATCTATAGAGTGGATTTCTACCTCAAGGCTACCC
AACAAGTGTTAGTGAGGATTATTTAGAATACCAATTATGGGACACAGTAC
AGGTTTGATATTCTTGTTATCATATAGTGATAAACACTTTAcagtttgtt
tatttattttcattcttttgatAAGCGATAGTAAACATTTCAAACTACTT
TTACGAGTTGTAAGTGATCGTTTGTTTCaaatgcaatgaaatgaaatgaa
atgaaaaaccaaaaaatcatTGTGTATCATTTGATGTGTATATCACTCGA
AGAAATGAACTTATCTGTTGTATCAATGTTTTATTTAATCATTGACACAT
CCTTCCACGAGATACACCCAAGCATGAAAgctattttatctttttttagg
ctttttgttcctccattacTGGAATGTTGGCAACACAAGCTATCCTCAAA
GGTTATGGTGTAGGAAATGAGAAAGCAACTGTGATGGCTGCCTCAATTAC
CTGGATGCTGAAAGATGGAGCTGGTATGATAGGCAGAATCATGTTCGCTT
GGTTGAAAGGGTAAAACAATAAGAAATCAGAATAACTGAGCCATTCTAGA
TTAAAAACGCTATATAATACTACTTTAGTAAAATACTTTCTTGCAATTAA
CAAGTCGCTCTTAATTTATTAGATGTTAGTTTGATTATTAAATCTTGAAG
TCATAAAGAAGgatcaatgataatttttttgtattcatAAAATTCTTTTT
AACCTATTGTATGTACAAGTAAAAAGAGTTATAAGGGGTCGGTTccattt
tctttctattttagaACTCAACTAGATTGTGATGCTAAACGGTGGAGGTA
TGATTTTGAACAATCTAAAAACTTAACGACGATAAAAAGATCTTGCCCTT
GCCTCCTTGTCAATTTGTGAGctagatttccaaaaaaagagaACCCTGGG
TTTgctaaatgtttattttttggaTAGCTTTTTGAAATACTATTTTAGTA
CACttgactagccgtcacccggcgtcgcactcgccgaggagtagataagc
tgaatgcatcataagccctttggatTGTTGAGAGGTTATGTACTGTTTTA
TTGTTTTAGGTTATGTGCTGATGTTCTGAATGATACAGCTATATTCCTTG
ATCTTCTGGCACCCATCTTCAAGAGTTACTTCATTTTTATTGCATGCTTA
TCAAGTATCACTAGGGTAAAAATTCAACAGCTTCATGCTGAACATGAATG
ATAAAGATAAATTAGCAAACCCATTTGATTTATTCAAAGAGTTTCTTTTG
GCTTTCTGTAAAAATGAGAAACCAATAGAAACCAACTCTTTTATTATCAT
TATGCTATAGTTACTTCTACTACTCTAAGTGTGATCTCTTTACAACCACC
ATTTGGAAAGCATCAGAATAATTAGATTAATCCCCTTGAGAGTTGTTTCC
ACATGTATTGAAAAAGAGTCCACACTTAAGTAATGTTTACTACAAAATTT
CTTAGCCCAAGCTAATGGTTTTGATCAGCCAAGCTAGCCAACCTTGATGT
TGGTAAACATTATCTCACTTTAATAAAATAATCTCTTTTCACAGTCAATC
GTAGGTGTGGCTGGAGGGGCGACAAGAGCAGCTTTAACACTTCATCAAGC
GAGAAGAAATAATATGGCTGATGTCTCTGCCAAGGATGGTAGTCAGGTAT
TTTATGAGAATGGAATCcctgattttttctgaaatttctcaGGAGATGAA
ACAGGCTCTTTCTTTTGTTACTGGAGCTATTATTACAATGAACAATGATA
TTAACGAGGTTAAgaagcaagtgtttatttagaccgttTAATGCGATATC
GTAGGCTtttgtacataagatttcacttgcatggtttgctttggtaattt
atgtacaggcctaccgTATCACACTTTACGGTGAAAATAAACcgttgctt
aacctcgctattgcCGGCTAGGTGGCTGTTCAGTTGGTACAGTATTACCT
CTCAATCAAAGGGTAGTTCTAGCTCAGCAATTTATCTTTCATGTCTAGTG
CAGCAAGCAAATAGTAAAGAATTTTATAATGCTTTCAGGAAACACTGGTC
AACTTGATGGCTTTGATAGCAAGTTTCATCCTAACACCAATTGTCGCCGA
TCGTCCAATGTAAAGTAtctcatttttttcaactttcattttATCTGGGG
TTGTTTTTGAATGTAAAATTGAGATTATGGCCACAGAGAGGTGTATTATA
AGTTGTTTTATacaaaaaagagttttttgaaCTTCCAATTAAGTTTTGTA
CAAATAATTCTATCAttacataaaaaaacattttccagaTAGAATTTCTA
AGTTTGTATTGTTGATAGTTTTGCATTGACCAACTTCTTGTTGTTAGAAT
ACTCCACTTGGGAATTGATCATAATCTAATGATTATTTTTGCTTTTCATT
TATAGATTAGTCTGGTTCTTATTTATTCTCTTCACTTTCTTTCACCTGTT
TGCTAATTATCGTGCTGTCAGTTGTGTTGTCATGGAAACGCTGAATATGA
ATAGACTGTACATTGTCATGCAGCATTTCATTGAGCATGAAGCTTTCTTA
TCGCCAAAACAGGTCAACAAACTAGAACCAGTGCTAAGAAGTATGCTCTT
TTTCACTTGCTTGCTTGGTGTTCTGTAATCTCATAAAACGGTTTCAAAAT
GACCAATGACCAAACTTACTTTTGCTACAACTTTTATTTACCACAACGGG
TtttctgttttaaaaatttctttgtttagttttcttgaaataaattGACC
ACATTACCCAGTAGTGTATTTCCTATAGAGTAAAGGAATAATGGACTTTT
TCAGGCCTGATTGAATATGATTTGCTATCACGCATTGTACTCCGCTTATA
CTATACCTTTTGAGCCTGTATACTTATCAAAAAAGCCTTTTGCTTTGGGA
TATCTCTTTAATGATCTTACCGAATGACCCGTTAATTCAAGCCCTAAACA
GCTTGGGCCAATGAAATTTAGGAATTAGATATGCATAGTCTTAATTCAAA
ATTTaggtattactttttaaatttgactccttaatctttaaaaaatgtga
aaaactaattttcttacATTCCTTTTGTTTCTCAGGGCACTGTAATTTCA
AAGACATTTGTATTGGTTCGAAGTTGGGAAGTATAATTAGGACGTTAGTA
AAGTAGTTTTGTTTATAACAGAGCTGTAAGCTGTTGAGCTGTAAGCCTTA
GGTCTATCTTAATTCAGGAGCTACTGTGTAGTATTACAAGCATCAAGGTT
GTAACAAGAATCCCTTTTTTACTTTCTCTAATCAACAAAGTCAAGTATGA
TTTTCTATAGAATAATCCATTGATCCACTTTTTCGTTCTACCCGCATAGT
ATTGATTATTTTTATGCTATCCTTCTTTACGATATTCCTCCAATCCTACA
ATTCAGGTATAAGATCCACAATAGTGATTTagaagaaattttgaagaatg
aaAGAAATCAATACATTGTTTCATTTGACCAAGGTAAGCTTAACACATTG
CCAAAATACTATAATTTGTGTACTTCAAATATGAAAACAAAGTAGCCTAA
TAATATCATAAGCATCTTATAGGCACATATTCTATTTTAATTAACACACT
CACTGCATAGGTGGTATGACTTACTCTCCCTACATTTAAGTTTCTAAAGT
TTATTAGATCCTGGACCACTGTACCTTTCTATTGCCTTTCGCTGTTGAAG
AGAAATCATCTCTTTTTCTTGCAAATGCCCTATTTGGAACTTTGGCACAC
TTTTAGATTGTGTTCCCTTCAGGGAATTCGAATATAATTCTTTTGTATCT
TAGGGAAAGTCTATGTTGCATTGCGCCATGGAGTTGACGATAGTATTATC
TTGCAAAGTAGCATAATGGCAATCCTGTTGGATATTGCTTTACGTAGTAG
TGATATTGTAAGAAATCATACTTCTCAAATTGTAATTCATACTGTATTTC
GTACGTTTATCTGACAGGTGACGGCTCATAGCATATACAAAGTACAAATA
AAAGCTTGGCATTTAAGCTTTCAAGAGATTGGTTTTCGAGCATCTGTCAC
ACTCCTAATGATCATTCTAAGGAAAAAAGtccgcttattaattttggaaa
atattttcagctaacACAAGCTGAACGAactgctctaaatagcctggttt
tagCTTAAAATTACCTTTTTTCGGTAATTGCAGCTGTAATAATTAAACCA
TTTTCTTTTAGAATTCCCAATATCTAAATAGTATCAGGAGCTGTATAGGT
AaggattttcatttttgcaaGTTCGGCCTCTAAGAGTTCCTAAGGAGCTT
GTACTCGAGTTTGTCAGGGCTGAATGATAACTACATATGTTTAGCAATGT
GTTACAGTcattttgatgatatttttttcaatccttGATCCCCTTTCTTA
CAGCTTTTGACGCAAGAGCTAATTAGGTGTATTAAAGGACCaggaaatga
gaaaattttatatttcttcATGATCAAAACCCTGATTACCCGTGATGCGC
TCTTCTGTTAGTAGAGCACGGAGGTGCGTCGCTTTTTTCGCACTTACTTT
TACCCCAAAATACTATCTTTAAGATCAAGGAATTGCGTATTATGAAATGG
TATTGTTGATATGCTGATTTTCAATTGCAGATAAAGGAAACCCACACTCA
ACATTTCAAAGATTAAAACCCTACGTTGAAGATTTGAATGTCAAACTTGT
GAAAGGTTTATCCGCAAACGGTTGGGATTTAACAAAATACCATTTAAATG
CTGACGAATGGCGATATCAATGGCCTGATAAAGCTCTTTAG Coding sequence (CDS) from alignment at sc0000023_pilon:576970..582160+ >XLOC_041087 ID=XLOC_041087|Name=XLOC_041087|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2652bp|location=Sequence derived from alignment at sc0000023_pilon:576970..582160+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTACTgagaaaaatgatttatttgaaACCTATGGTGCTAGTCAAAG
GTACTATTATGACTTGAAAGATGAAGAAACCAATCATATTCAACATTATA
ATCAAAAGGAAAAACACAAGGGATTTGCGAACAAAATAAAGGAGACTTTC
AAGATGGTTACTgagaaaaatgatttatttgaaACCTATGGTGCTAGTCA
AAGGTACTATTATGACTTGAAAGATGAAGAAACCAATCATATTCAACATT
ATAATCAAAAGGAAAAACACAAGGGATTTGCGAACAAAATAAAGGAGACT
TTCAAGAGTGGATTTCTACCTCAAGGCTACCCAACAAGTGTTAGTGAGGA
TTATTTAGAATACCAATTATGGGACACAGTACAGAGTGGATTTCTACCTC
AAGGCTACCCAACAAGTGTTAGTGAGGATTATTTAGAATACCAATTATGG
GACACAGTACAGgctttttgttcctccattacTGGAATGTTGGCAACACA
AGCTATCCTCAAAGGTTATGGTGTAGGAAATGAGAAAGCAACTGTGATGG
CTGCCTCAATTACCTGGATGCTGAAAGATGGAGCTGGTATGATAGGCAGA
ATCATGTTCGCTTGGTTGAAAGGgctttttgttcctccattacTGGAATG
TTGGCAACACAAGCTATCCTCAAAGGTTATGGTGTAGGAAATGAGAAAGC
AACTGTGATGGCTGCCTCAATTACCTGGATGCTGAAAGATGGAGCTGGTA
TGATAGGCAGAATCATGTTCGCTTGGTTGAAAGGaACTCAACTAGATTGT
GATGCTAAACGGTGGAGaACTCAACTAGATTGTGATGCTAAACGGTGGAG
GTTATGTGCTGATGTTCTGAATGATACAGCTATATTCCTTGATCTTCTGG
CACCCATCTTCAAGAGTTACTTCATTTTTATTGCATGCTTATCAAGTATC
ACTAGGGTTATGTGCTGATGTTCTGAATGATACAGCTATATTCCTTGATC
TTCTGGCACCCATCTTCAAGAGTTACTTCATTTTTATTGCATGCTTATCA
AGTATCACTAGGTCAATCGTAGGTGTGGCTGGAGGGGCGACAAGAGCAGC
TTTAACACTTCATCAAGCGAGAAGAAATAATATGGCTGATGTCTCTGCCA
AGGATGGTAGTCAGTCAATCGTAGGTGTGGCTGGAGGGGCGACAAGAGCA
GCTTTAACACTTCATCAAGCGAGAAGAAATAATATGGCTGATGTCTCTGC
CAAGGATGGTAGTCAGGAAACACTGGTCAACTTGATGGCTTTGATAGCAA
GTTTCATCCTAACACCAATTGTCGCCGATCGTCCAATGAAACACTGGTCA
ACTTGATGGCTTTGATAGCAAGTTTCATCCTAACACCAATTGTCGCCGAT
CGTCCAATATTAGTCTGGTTCTTATTTATTCTCTTCACTTTCTTTCACCT
GTTTGCTAATTATCGTGCTGTCAGTTGTGTTGTCATGGAAACGCTGAATA
TGAATAGACTGTACATTGTCATGCAGCATTTCATTGAGCATGAAGCTTTC
TTATCGCCAAAACAGGTCAACAAACTAGAACCAGTGCTAAGAAATTAGTC
TGGTTCTTATTTATTCTCTTCACTTTCTTTCACCTGTTTGCTAATTATCG
TGCTGTCAGTTGTGTTGTCATGGAAACGCTGAATATGAATAGACTGTACA
TTGTCATGCAGCATTTCATTGAGCATGAAGCTTTCTTATCGCCAAAACAG
GTCAACAAACTAGAACCAGTGCTAAGAAGGCACTGTAATTTCAAAGACAT
TTGTATTGGTTCGAAGTTGGGAAGTATAATTAGGACGGCACTGTAATTTC
AAAGACATTTGTATTGGTTCGAAGTTGGGAAGTATAATTAGGACGTATAA
GATCCACAATAGTGATTTagaagaaattttgaagaatgaaAGAAATCAAT
ACATTGTTTCATTTGACCAAGGTATAAGATCCACAATAGTGATTTagaag
aaattttgaagaatgaaAGAAATCAATACATTGTTTCATTTGACCAAGGG
AAAGTCTATGTTGCATTGCGCCATGGAGTTGACGATAGTATTATCTTGCA
AAGTAGCATAATGGCAATCCTGTTGGATATTGCTTTACGTAGTAGTGATA
TTGGAAAGTCTATGTTGCATTGCGCCATGGAGTTGACGATAGTATTATCT
TGCAAAGTAGCATAATGGCAATCCTGTTGGATATTGCTTTACGTAGTAGT
GATATTAATTCCCAATATCTAAATAGTATCAGGAGCTGTATAGAATTCCC
AATATCTAAATAGTATCAGGAGCTGTATAGATAAAGGAAACCCACACTCA
ACATTTCAAAGATTAAAACCCTACGTTGAAGATTTGAATGTCAAACTTGT
GAAAGGTTTATCCGCAAACGGTTGGGATTTAACAAAATACCATTTAAATG
CTGACGAATGGCGATATCAATGGCCTGATAAAGCTCTTTAGATAAAGGAA
ACCCACACTCAACATTTCAAAGATTAAAACCCTACGTTGAAGATTTGAAT
GTCAAACTTGTGAAAGGTTTATCCGCAAACGGTTGGGATTTAACAAAATA
CCATTTAAATGCTGACGAATGGCGATATCAATGGCCTGATAAAGCTCTTT
AG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023_pilon | genome | sc0000023_pilon:576970..582160 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1168-1326:5033 |
| Aaloc | 1129-1164:4612 |
| Aaloc | 1027-1128:4206 |
| Aaloc | 949-1023:3808 |
| Aaloc | 892-945:3488 |
| Aaloc | 706-888:2807 |
| Aaloc | 634-702:2439 |
| Aaloc | 532-633:1945 |
| Aaloc | 427-531:1461 |
| Aaloc | 394-423:1166 |
| Aaloc | 232-390:750 |
| Aaloc | 154-231:375 |
| Aaloc | 1-153:1 |
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