|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000134_pilon:249793..253135+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038326 ID=XLOC_038326|Name=XLOC_038326|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3343bp|location=Sequence derived from alignment at sc0000134_pilon:249793..253135+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGGCTACATTACCAGGTGGACTTGGAGAAAGGAAAACTGTTGCGGT
CAAGATTCCAAAAGGTGATGATTCAGATTACTTtggtagcaaaaaaaatt
tacattagctagtggggatggttttggagtacaatttttaaacatggaat
ttcgaagGAGAcgaaatcaaagtaaattttccagtgggactgaaattaca
GGGTTTTTTCCCGCCGGGGATGAAATCTTTgccaaaaattccagtgggca
gcgggtctgtgacacaggggtgttttggtagcaaaaaaagaatttacatT
AGCCACAAATCAGTATATCAGACTTTTgttgtttgaaaaaatcatatttt
cattttagtacGATAGTCAACTATTTTCAGGGCCTACGTAATATTTCTGC
GGTCTACGGCTAAAATTGCCCACTCGAACTCAAATATATATTACAATTTT
CTCTTCAGAAAATGCTAAAAGACAAGATTTACTCTTGGAGTTAGCAATGT
TGAAGCATATTGGACATCATAAACATATCATCAATTTTCTTGGATGTTGC
ACTGAAATGGGTATGTCCTTTTGTTGGTATGTCTCATGTTAGAATATGTT
AGGTCCTATTTTATACACCATTTTTTGGATAGCATTTACACTTGTTGTAG
ACCCAAATACTGCTaataaaagaacattttcatttcttttttagaCCCTA
TCTACATCATACATGAATACGCACCTTATGGTAATTTACGTATGTTCCTT
CGTTCGAAAAGACCTTTAGCAATGGACCAGCAACCTTTTCTAACGACCAA
AAACTTGATATCTTTCTCGTCACAAGTGGCCCAAGGAATGGAGTTTCTTG
CTTCCAAAATGGTATCCACATACTTTAATGCGTTAAAATCTCGCACCTTT
CCGAGCACGTTCTGATTACTACGCGCTGGCACGTACGCACTATAAAGGCC
ATGATTCCAAAAGAGAATCTCTCCAAGTCGGTGGACCGggtttgaatgaa
tattttggaTTTGCTTTTGAGCGTGGCGATGGCACGTATTCAGATGGCTC
CGTTAGAGAATTTACCTTAGTTGATGTGccgctttgattttttttttcat
tcagattttggataaatattaaaaatgagcttttgagcgtgGCAAAACAA
ACGTCAATCGTAagcataaacattagaacccagtcgttTCCGCTTTCAAG
CAAAAAGGCAGAATTTTGGTTGAACAACTAAGTCAAATTCATCATATTCC
TTTAAAGCAGAGCGTGGTAAGGGCAGAACGGATGATCTTTTATGAGATTA
ATgcaaaaatgcttataataagaAGGCACTGAAGTACTGTAGTACTGGTA
GAAAAACTAAGATTAATTCATTTCCTTGCCAtttttttCTAGTGTATACA
CCGCGATCTCGCTGCACGAAACGTTTTACTAGGTGAAGATTACGTCATCA
AGATTGCAGACTTCGGATTGGCTAGAAGTCTTAAAAATACAGACTATTAC
CAAAAGACTACTAACGTAAGTAAAACATACCCCTGTATCGTTGATTCCAA
TAATGTACATTAACTAGCAAGTACATGTCGCTATGAATGGCCCCGCGAAC
GCATTGATAATCCAGAATGAACGTTTTAAGGCTGCATTTCAGCAAATAGC
TTTATTTGAACACCCAAAGCTTAAACGCTTTTCTCTTTCCATTGAAACCT
TCAATGTTTTTtggtttgttaaaaaataatagcaaacgcccacccaaaaa
atgatgaaaaaataaaagtaaatatcgcaacttcttgaaatttttttgct
gagACATCCTACTGCGACGCAAAAAAGCCCCTTGCAGGGCAATGACGCGG
AAATCAGccaaaacgaaaaaaattctCTAGAAAAGAACTTTTTCAATACA
ATTATTTAGTGTTTTAAATTCGCTTTGTTCTAGGGTCGGGTATCAGTCAA
ATGGGTTGCTATTGAAGCACTTTTAGACCGTGTATACAGTACACAATCAG
ATATTTGGGCGTATGGCGTGTTGTTATGGGAGATTTTCACTTTGGGCGGA
ACACCCTACCCACGAATACCGGTTCAAGATCTTTATAAAGTGTTAAAAGA
CGGATATCGAACGAAAAGACCGAAAAATTGCCCTCCTCAAATGTAAGTTT
AATATAAGTAAATGCGCTCATTTCTTAATTTACCTTTTTTATCCTAGGTT
CTCAGCCGAATTGAAAGTAGACGGGCgacatttcttcaaaaattttatag
gttttttttACCGATTTAAGCATTTCCACTCATCTGAGCTTTTTAAAATG
GAAGAAAGCTTAAAGACAGAATACCTTATCAGGAATAAAATGCCGGAGTT
TTACTTAGTTGGGGTAtttttttGTCGGGGAAagatttcgtcacctagag
gtatttttttcgtcacttttcccgaCCAAATTCTTTTAATGTTCCCGACA
AAATATAGAGCAGCATAGGAAGAAATTATCAAGATTTTTAGTCATGCTTA
TTTGTTTCTATAGTTTTATTACAACACTGAATTACTGTTACAAACCACTA
CTGTTAGGTATATAGCAATTTACAAAGTAGAAAGTTTAATCTAAAACAAT
AACATCATGCACCCGAGTTTTGGgcgggataaaaaaatcggataaaagtt
ttggtcgggtaataaaatatcggggaaaaaaaccgtcgggggaaaatttc
gtcaccccctcaaaatttcccccgacatttttttccccgctaAGGATAGG
AAAATTATGTTtctttttcatgtatttttacAGATATGAAATTATGGGTA
AATGTTGGAACGAAAAGCCGTCAAAAAGACCGTCTTTTAGTGAACTTGTC
GCTCATATGGAATCGCTGCTGGATGAATCAACCTCTGATGTATGATTTGT
TTCTAAATCTACCCTTGGTTATGAAATTTCTCCAGCTAGCATTTGTCGAA
AAAGACTAATTTTGTGATACCTTTTGGGTTCGTGGTAGATAATAATAATA
CAAGCAggttttttgcacaatttttagtgaaaatctTGGAGGAAAAAATT
AAAGTCGATGAAGTGCGAAAGTTTCATTATGCGAAGTCTTATTTCCAAGT
GATACAAAAGATAACGTTcaactaacgttatatagacgtttAAAGATGGA
CAAGAGGTCCCCCAAGAGGACACGAATGCAGGTATctgtaaattaaaaat
tcattttcaattttcaggataTATTCGAATTCAAGTCACCAGATGGTAGC
CTCGACAACGAAGAGCTTGAAACTGACGAAGAGAACGAGCAACCATCTTT
GATGTCAGATGGATACGCTTTTTTGACGACGAAAGTGCTTTAA Coding sequence (CDS) from alignment at sc0000134_pilon:249793..253135+ >XLOC_038326 ID=XLOC_038326|Name=XLOC_038326|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1794bp|location=Sequence derived from alignment at sc0000134_pilon:249793..253135+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGGCTACATTACCAGGTGGACTTGGAGAAAGGAAAACTGTTGCGGT
CAAGATTCCAAAAGATGAAGGCTACATTACCAGGTGGACTTGGAGAAAGG
AAAACTGTTGCGGTCAAGATTCCAAAAGAAAATGCTAAAAGACAAGATTT
ACTCTTGGAGTTAGCAATGTTGAAGCATATTGGACATCATAAACATATCA
TCAATTTTCTTGGATGTTGCACTGAAATGGAAAATGCTAAAAGACAAGAT
TTACTCTTGGAGTTAGCAATGTTGAAGCATATTGGACATCATAAACATAT
CATCAATTTTCTTGGATGTTGCACTGAAATGGaCCCTATCTACATCATAC
ATGAATACGCACCTTATGGTAATTTACGTATGTTCCTTCGTTCGAAAAGA
CCTTTAGCAATGGACCAGCAACCTTTTCTAACGACCAAAAACTTGATATC
TTTCTCGTCACAAGTGGCCCAAGGAATGGAGTTTCTTGCTTCCAAAATGa
CCCTATCTACATCATACATGAATACGCACCTTATGGTAATTTACGTATGT
TCCTTCGTTCGAAAAGACCTTTAGCAATGGACCAGCAACCTTTTCTAACG
ACCAAAAACTTGATATCTTTCTCGTCACAAGTGGCCCAAGGAATGGAGTT
TCTTGCTTCCAAAATGTGTATACACCGCGATCTCGCTGCACGAAACGTTT
TACTAGGTGAAGATTACGTCATCAAGATTGCAGACTTCGGATTGGCTAGA
AGTCTTAAAAATACAGACTATTACCAAAAGACTACTAACTGTATACACCG
CGATCTCGCTGCACGAAACGTTTTACTAGGTGAAGATTACGTCATCAAGA
TTGCAGACTTCGGATTGGCTAGAAGTCTTAAAAATACAGACTATTACCAA
AAGACTACTAACGGTCGGGTATCAGTCAAATGGGTTGCTATTGAAGCACT
TTTAGACCGTGTATACAGTACACAATCAGATATTTGGGCGTATGGCGTGT
TGTTATGGGAGATTTTCACTTTGGGCGGAACACCCTACCCACGAATACCG
GTTCAAGATCTTTATAAAGTGTTAAAAGACGGATATCGAACGAAAAGACC
GAAAAATTGCCCTCCTCAAATGGTCGGGTATCAGTCAAATGGGTTGCTAT
TGAAGCACTTTTAGACCGTGTATACAGTACACAATCAGATATTTGGGCGT
ATGGCGTGTTGTTATGGGAGATTTTCACTTTGGGCGGAACACCCTACCCA
CGAATACCGGTTCAAGATCTTTATAAAGTGTTAAAAGACGGATATCGAAC
GAAAAGACCGAAAAATTGCCCTCCTCAAATATATGAAATTATGGGTAAAT
GTTGGAACGAAAAGCCGTCAAAAAGACCGTCTTTTAGTGAACTTGTCGCT
CATATGGAATCGCTGCTGGATGAATCAACCTCTGATATATGAAATTATGG
GTAAATGTTGGAACGAAAAGCCGTCAAAAAGACCGTCTTTTAGTGAACTT
GTCGCTCATATGGAATCGCTGCTGGATGAATCAACCTCTGATgataTATT
CGAATTCAAGTCACCAGATGGTAGCCTCGACAACGAAGAGCTTGAAACTG
ACGAAGAGAACGAGCAACCATCTTTGATGTCAGATGGATACGCTTTTTTG
ACGACGAAAGTGCTTTAAgataTATTCGAATTCAAGTCACCAGATGGTAG
CCTCGACAACGAAGAGCTTGAAACTGACGAAGAGAACGAGCAACCATCTT
TGATGTCAGATGGATACGCTTTTTTGACGACGAAAGTGCTTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134_pilon | genome | sc0000134_pilon:249793..253135 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 772-897:3218 |
| Aaloc | 667-771:2785 |
| Aaloc | 457-663:1934 |
| Aaloc | 334-456:1393 |
| Aaloc | 169-333:697 |
| Aaloc | 67-165:461 |
| Aaloc | 1-63:1 |
|
