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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000302_pilon:39944..45184+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_023425 ID=XLOC_023425|Name=XLOC_023425|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5241bp|location=Sequence derived from alignment at sc0000302_pilon:39944..45184+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTGAATCTGGAAGTGAATTTATTATTGACGATAATGATCAGGATCAGGG
TTGCAGTGATTCCAATGATGTTACCAATGATGAGAGAAGATGGTAAATAt
atcatttttctaaaatgaaaactttttctttgacatTGCTTTTTGAATAT
GTTAATCAAAATACGACCTACCAAAATTGATTTACCAGAAAGTAATTTCA
TATTCAagttaactttttataaaaatttaagttaaatttttcatcaaaat
cgattttttattagttttaatagacattttGGATGAGGCGAAAGAATTGC
TTGGCCCTGTTAAAAAGCGAACTTGGGGACAAAGAATAGAAAATTCGGAA
AGTAATTGGTTTGCAGCTAGAGAATATTTGCTTGAAGAACTGGTCAAAAG
AGAGGAACGACCATCATCGCTATGctataaatgttttaaagctGAAGCTA
CAATAAAATGTGTTACCTGCTCTCCTTTTTTACTGCTCTGTCCTGATTGT
GACTTCGACtttcatcaatcaatcatctTCCACGATCGTCAATGGTTCAA
CGGTTATTTCAAGCCACTGAAACCAGATGAGCATATTAAAGATGGTGAAA
TAATCACAATACGTAAACCttttttttACTCTTACTGCATAGGATTTGGA
AGATTAGAACtagaaataaacattttattcttctttcttttgctgaaaat
gttgaaaatctgagaattgttgatattttttagcTAAACCAATGCTGTTA
TTTAAAGATTGTGTCTCATGCGGTCATCTTTGTGATAACTGTGAAATAAG
AACAATGAACGCTCAAATAGCTGTCATTACAACTAGAGGTAATCTTTACA
ATCATTTAGATACTTCAATATTTAGCTCAGATATTGTTTTTTACTATaaa
aaaaCCCATGTGAATATCAGTGTtgctaaaattaaaaagaatcaTGTTTA
GAGAGTGAAACTTATAAAAGCTAAGTGCATGTTATGCACtttttgtttta
agatagatacccctttttattttttatttttcttcgttttgctacttttt
ttCTAACATCATTATTATTAATAGAATTAGAAGATActctcaaaatttct
ttctttaaggaCGTTTTGATTTAAACAAATACACCCGTATTTGTTGCTGT
TGTGGTGAACATACAAACCCTTTCCAAATCAGAACATTGATTCAAAACGG
TTTTTGGCCAACTACTCTGAACTATGCGCAGACTATTGTCAATGAAGAAT
GTTTCAAGCTTTGGGACAGATTTTCCAAACGCATGCCTGGTTCATCACTA
CAAAGTTTTCTAAGAAGTCTTTCTGATATATCCATTTCAAATGGCAgggt
ttgttcttttttaaagattgttttGGGTTTAATTCATCTGGCATTAAATG
GCCTATCAATTAATCTTGTGCTTTTGTGAAATAAAAATAGTAGGTTCTAC
GCCTTAGAGAGCAACGTGCTCTCCGTGTAGTTCAAGTGTTAGCTATGCAC
CATGGTATCTGTGTGTCGCGAATACAGATCCGGTGATGTCTGGAGAGCTC
TGCGCTTCCTACTCGAAAAAATAGGAAGAAATGGTAAAGTTCCTATCTTT
AAGAAGAATCTTTTATGTCTCACCTATTGCTCACCTTTTATAATTGTTCT
GAAACTCAAATACGCCACctcaaacaaaacaaattacaCTATGATCAGAA
ATGGAAGAATCAAATTGACTCCAGTTACTGTTCTactctttgtttacttt
gtttttAGAATGGTACAATCAATGCTAATACTTTCGTACAGGTGTATAGG
GAATATAACTTTGCACAGTATGAAATTGAAAAACGCCTGTCATTTTCTTG
GTTTGACTGTCCTGCTTGCGGAGATCAACAGCATTCCTGTCACGTGGACG
GAAACTGCAAGCTTTATCGTTATAAAACATCGGGGAAGTTAGTATCTTTT
TTCCTGTTTCCCTGTCACtcgttttcataaaaatataccGGCAACAAATT
ACTGAACTAAATAAAAAGGATTTATACAGCATttagaaaatgatattttt
atgatATGTTTAActcaaaaacaattttgctcATAATTGAACTACTTGta
atatttttctcataatttaGACTTGTATCAAATTCTTACTATGGTGACAT
TTTCATTGCCAAAAATCAACATGTAGATGACCTTTTGGAAGAACTGAACT
ACAATCCAAAACGGGTACTTTAAATAAGTTTTAATGATTGTAAAGTCTGA
TACTTTTAAACCAGAGGAACTTAACTATCAATTGGTTGTTGGCTCATATC
TCTGTATTGTATTTCTTTAGAACTCAGAACCTGTCCATTGTGGTGGAAGT
ATTTTGAAAGCAGCTCAAAATGTTTCTAGGAAAAAAGCATCATTGGATGA
AACTGGTTTCGAATATTGTGTATGCAGACATGGTGTTGCACAGCGCGGTG
TTAATATGTATAGGGGAGAGATTTTTGGCTATGCCTACTACTTGCAAAAG
GGAATCATGGTTGACAACAATGTAAAGTTTATGTGGTATGATGTTATCTG
TAAATATTGGGCATGGCTAGAATCACACGACCCATTCATTAAGGAAGATA
TGAACCCTGCCCTATCGGTTCTGCATGGTAAAATGCATCAAATGCTTTGT
Caggtttgattttatttaatttaccataaattttcatattttcttatttg
ggcgagaatttatttCAGCGAGTCGCCAATTGTTTTAATCGGTGAgtcat
ggaattttttaattttggtgagtCCTTATTTAGTGCTCGCCATCAAAATT
ACTATTCTATAGGtatataaattgaaattttaggtATAATTTTTTACGGG
CAGTCACAAAAAGTTGATATGATAACAATTGCTTACTTTTTTATTCCTCA
GGTTAAATATGGTGGTAGGTGGCAGACAGGTGCTGCTTTAACAAGTGGAG
AGGAAGCTGAGCAAGTCAATAGTTATTTGTCCAGATTGACAAACACTACA
AAATACATGCTTCCACAAAGTATGTATAGAATTAGACATTTTAACGATTT
TGTAAGACAATGatgacatttatttttctaatgatTTAGGTAGcattttt
aacgaattttttcttatgTAATTATGATTCTTTATTCAAAGATCGAGACG
ATACCATAACTGAGTTTGCTATGGATTGGAACGGACGCAAAATTCGAAAT
CTGGCAATGACACTTGTccaaagatataaaaaagtATGAAGTAGTCAGTG
TTCTCTGAGATAATATTTTTGATTAGTACTTTCTCAAACATCAAATTATA
ATCAATTCGTTTTATCAAACTTGAACCATCCTTGTGTTTTGCGCTTTACT
ACATTTGAGGAAATTCGAAATGTTTAATTACTGTTTTCTATCTATTTCAG
GTTCAAAAAGAATTAGGAAAAATATCTAAACCCACAAACTTCGATGAACT
TGAACAGAAGAAACaggattttattttaactaCTCAaggtttgtaatttt
tcaaacaataaaaaaaagtgcACTATTTCTGCCTATTCTTTTTAAAAGCA
ACGTAAAAAACCTTTATAATGTTTTAGAATACGCTaaaaaaggagaagga
gatgaaaaagaaaaactaatggAAGAAATAGCAAAGATCAGATTCGAAGT
TGCAATGAGAAGTGCCATGATTGGTAAATTTGCCGGTATGTATGCAACGC
CCTACTGGGTACGGGTTTTACAACAACTGTGCGGTAATAGTTACTAATAG
AGCTTTTACTCGTTTTCAGTCTATATTTTCGCCAAAACTTTACCAGTGAC
GTCTTTGATGTAAAATAAATATGTCTCTCTCTCTTTTTGTTTGAACAAAA
TTCAATGgcataaattgaataaattgtctttaactttcgtttttcaTTAT
TAGCATCGAGTAAACAAAGAACAAAGCTTAGACGTAAAAATACTAACGAC
AACGAAAAAGCCGATAAACTTGAGGTGAAGTTGAAAGAAATCTTTGGAGA
CAGTGACAGTTGGAAACAACACTTAGAGGAGACAGAACGTAAACTTGGTA
TGTTATTTCACAAAACGTATTTTGTCCAGCAACTTTATTTTCCTTTTGAT
CAGCTCTAACTTGAATACTGAAGTTTTCTCAGAATCTTTCAGAAcatgat
attgtatttttagaaatccggaaaaagtcaaaacaaacgaTTGACGATGG
CATGTTGTACCAGAGGCACTTAGAAGAGAAAAAGCTTTTAGtcgaagaaa
tgaaaaattttactAGCCACTACAAAAAGAAACTTATGTCCCTGAAAACT
GGTTCGTAATTTTGCTTTAGATATAGCACAAAAATTGCAGAATCACCTAC
ACGAGTAGTAGAAAGTTTATGCGCGTGTATACTTTTTAGTATTACAATAA
GAAAACAGCAAAGGGTATTGTCTCAGTGGAATGACTTTGAAAAAAGAGGT
GAACGTGAACCTGTGCTTTTTACGTTTCCATGGTAACCCATAGTGGGTAT
CCCAGTAGGAATTTTTGGGGAGGTGTTAAACTTTTTGCTGGCGGTTAgag
gtttttatatttttctcaatagaatttctattgttctttttgttaAGGGA
GCTTCTGACCTCTCTGCCCACTAAGTTGCTTTGTAGATTTGAAATAAAGA
TTCATTTTAACTACAACCACCATTGTTTTACCACTGACTTCAAAATgata
aatgaaattattttgaaaatatttgatttgaCCAATATCACTACCTGTAA
TAATAAGAACgtttttctcgttttttaaaggaaaaagttGCGCTTTGGCT
TCAAATTACACTTCTGATATACACGACAAGCCAACGCTGGAAATGCAACA
CGATGTAAGAGTTTATGAACTATTTTCACCAAACTTAATTtatatctttt
atattttctgtCTAAGATTCGTACAGTGTAAACTTCAGGGAattttttga
acgatttttacattaacatatgttttatatattttttcaatgaatgtTGA
AGGTAACAAACctacatttttctttcagacCTTGATGGAAGAAGGGGAAC
AAAATTTGAGAAGGAAAGCTATTGACTTGTGTTCGCAGCAACTATCAATC
GGAATCGAACTCTTCAGCAAAGTTGTTACAAATGATTTTTCGGAAATTCC
AGACGAAGAGAACGAAAGTGAATTTCCCAAATCTGACCATGAAACCAGCG
ACACGAGTAGTGATGAAATAGACGAACACAACGAATCGTGA Coding sequence (CDS) from alignment at sc0000302_pilon:39944..45184+ >XLOC_023425 ID=XLOC_023425|Name=XLOC_023425|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4722bp|location=Sequence derived from alignment at sc0000302_pilon:39944..45184+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTGAATCTGGAAGTGAATTTATTATTGACGATAATGATCAGGATCAGGG
TTGCAGTGATTCCAATGATGTTACCAATGATGAGAGAATTTGAATCTGGA
AGTGAATTTATTATTGACGATAATGATCAGGATCAGGGTTGCAGTGATTC
CAATGATGTTACCAATGATGAGAGAAttttaatagacattttGGATGAGG
CGAAAGAATTGCTTGGCCCTGTTAAAAAGCGAACTTGGGGACAAAGAATA
GAAAATTCGGAAAGTAATTGGTTTGCAGCTAGAGAATATTTGCTTGAAGA
ACTGGTCAAAAGAGAGGAACGACCATCATCGCTATGctataaatgtttta
aagctGAAGCTACAATAAAATGTGTTACCTGCTCTCCTTTTTTACTGCTC
TGTCCTGATTGTGACTTCGACtttcatcaatcaatcatctTCCACGATCG
TCAATGGTTCAACGGTTATTTCAAGCCACTGAAACCAGATGAGCATATTA
AAGATGGTGAAATAATCACAATACttttaatagacattttGGATGAGGCG
AAAGAATTGCTTGGCCCTGTTAAAAAGCGAACTTGGGGACAAAGAATAGA
AAATTCGGAAAGTAATTGGTTTGCAGCTAGAGAATATTTGCTTGAAGAAC
TGGTCAAAAGAGAGGAACGACCATCATCGCTATGctataaatgttttaaa
gctGAAGCTACAATAAAATGTGTTACCTGCTCTCCTTTTTTACTGCTCTG
TCCTGATTGTGACTTCGACtttcatcaatcaatcatctTCCACGATCGTC
AATGGTTCAACGGTTATTTCAAGCCACTGAAACCAGATGAGCATATTAAA
GATGGTGAAATAATCACAATACcTAAACCAATGCTGTTATTTAAAGATTG
TGTCTCATGCGGTCATCTTTGTGATAACTGTGAAATAAGAACAATGAACG
CTCAAATAGCTGTCATTACAACTAGAGcTAAACCAATGCTGTTATTTAAA
GATTGTGTCTCATGCGGTCATCTTTGTGATAACTGTGAAATAAGAACAAT
GAACGCTCAAATAGCTGTCATTACAACTAGAGgaCGTTTTGATTTAAACA
AATACACCCGTATTTGTTGCTGTTGTGGTGAACATACAAACCCTTTCCAA
ATCAGAACATTGATTCAAAACGGTTTTTGGCCAACTACTCTGAACTATGC
GCAGACTATTGTCAATGAAGAATGTTTCAAGCTTTGGGACAGATTTTCCA
AACGCATGCCTGGTTCATCACTACAAAGTTTTCTAAGAAGTCTTTCTGAT
ATATCCATTTCAAATGGCAgggaCGTTTTGATTTAAACAAATACACCCGT
ATTTGTTGCTGTTGTGGTGAACATACAAACCCTTTCCAAATCAGAACATT
GATTCAAAACGGTTTTTGGCCAACTACTCTGAACTATGCGCAGACTATTG
TCAATGAAGAATGTTTCAAGCTTTGGGACAGATTTTCCAAACGCATGCCT
GGTTCATCACTACAAAGTTTTCTAAGAAGTCTTTCTGATATATCCATTTC
AAATGGCAggAATGGTACAATCAATGCTAATACTTTCGTACAGGTGTATA
GGGAATATAACTTTGCACAGTATGAAATTGAAAAACGCCTGTCATTTTCT
TGGTTTGACTGTCCTGCTTGCGGAGATCAACAGCATTCCTGTCACGTGGA
CGGAAACTGCAAGCTTTATCGTTATAAAACATCGGGGAAAATGGTACAAT
CAATGCTAATACTTTCGTACAGGTGTATAGGGAATATAACTTTGCACAGT
ATGAAATTGAAAAACGCCTGTCATTTTCTTGGTTTGACTGTCCTGCTTGC
GGAGATCAACAGCATTCCTGTCACGTGGACGGAAACTGCAAGCTTTATCG
TTATAAAACATCGGGGAAACTTGTATCAAATTCTTACTATGGTGACATTT
TCATTGCCAAAAATCAACATGTAGATGACCTTTTGGAAGAACTGAACTAC
AATCCAAAACGGACTTGTATCAAATTCTTACTATGGTGACATTTTCATTG
CCAAAAATCAACATGTAGATGACCTTTTGGAAGAACTGAACTACAATCCA
AAACGGAACTCAGAACCTGTCCATTGTGGTGGAAGTATTTTGAAAGCAGC
TCAAAATGTTTCTAGGAAAAAAGCATCATTGGATGAAACTGGTTTCGAAT
ATTGTGTATGCAGACATGGTGTTGCACAGCGCGGTGTTAATATGTATAGG
GGAGAGATTTTTGGCTATGCCTACTACTTGCAAAAGGGAATCATGGTTGA
CAACAATGTAAAGTTTATGTGGTATGATGTTATCTGTAAATATTGGGCAT
GGCTAGAATCACACGACCCATTCATTAAGGAAGATATGAACCCTGCCCTA
TCGGTTCTGCATGGTAAAATGCATCAAATGCTTTGTCagAACTCAGAACC
TGTCCATTGTGGTGGAAGTATTTTGAAAGCAGCTCAAAATGTTTCTAGGA
AAAAAGCATCATTGGATGAAACTGGTTTCGAATATTGTGTATGCAGACAT
GGTGTTGCACAGCGCGGTGTTAATATGTATAGGGGAGAGATTTTTGGCTA
TGCCTACTACTTGCAAAAGGGAATCATGGTTGACAACAATGTAAAGTTTA
TGTGGTATGATGTTATCTGTAAATATTGGGCATGGCTAGAATCACACGAC
CCATTCATTAAGGAAGATATGAACCCTGCCCTATCGGTTCTGCATGGTAA
AATGCATCAAATGCTTTGTCagGTTAAATATGGTGGTAGGTGGCAGACAG
GTGCTGCTTTAACAAGTGGAGAGGAAGCTGAGCAAGTCAATAGTTATTTG
TCCAGATTGACAAACACTACAAAATACATGCTTCCACAAAGTTAAATATG
GTGGTAGGTGGCAGACAGGTGCTGCTTTAACAAGTGGAGAGGAAGCTGAG
CAAGTCAATAGTTATTTGTCCAGATTGACAAACACTACAAAATACATGCT
TCCACAAAATCGAGACGATACCATAACTGAGTTTGCTATGGATTGGAACG
GACGCAAAATTCGAAATCTGGCAATGACACTTGTccaaagatataaaaaa
ATCGAGACGATACCATAACTGAGTTTGCTATGGATTGGAACGGACGCAAA
ATTCGAAATCTGGCAATGACACTTGTccaaagatataaaaaaGTTCAAAA
AGAATTAGGAAAAATATCTAAACCCACAAACTTCGATGAACTTGAACAGA
AGAAACaggattttattttaactaCTCAagGTTCAAAAAGAATTAGGAAA
AATATCTAAACCCACAAACTTCGATGAACTTGAACAGAAGAAACaggatt
ttattttaactaCTCAagAATACGCTaaaaaaggagaaggagatgaaaaa
gaaaaactaatggAAGAAATAGCAAAGATCAGATTCGAAGTTGCAATGAG
AAGTGCCATGATTGGTAAATTTGCCGAATACGCTaaaaaaggagaaggag
atgaaaaagaaaaactaatggAAGAAATAGCAAAGATCAGATTCGAAGTT
GCAATGAGAAGTGCCATGATTGGTAAATTTGCCGCATCGAGTAAACAAAG
AACAAAGCTTAGACGTAAAAATACTAACGACAACGAAAAAGCCGATAAAC
TTGAGGTGAAGTTGAAAGAAATCTTTGGAGACAGTGACAGTTGGAAACAA
CACTTAGAGGAGACAGAACGTAAACTTGCATCGAGTAAACAAAGAACAAA
GCTTAGACGTAAAAATACTAACGACAACGAAAAAGCCGATAAACTTGAGG
TGAAGTTGAAAGAAATCTTTGGAGACAGTGACAGTTGGAAACAACACTTA
GAGGAGACAGAACGTAAACTTGaaatccggaaaaagtcaaaacaaacgaT
TGACGATGGCATGTTGTACCAGAGGCACTTAGAAGAGAAAAAGCTTTTAG
tcgaagaaatgaaaaattttactAGCCACTACAAAAAGAAACTTATGTCC
CTGAAAACTGaaatccggaaaaagtcaaaacaaacgaTTGACGATGGCAT
GTTGTACCAGAGGCACTTAGAAGAGAAAAAGCTTTTAGtcgaagaaatga
aaaattttactAGCCACTACAAAAAGAAACTTATGTCCCTGAAAACTGga
aaaagttGCGCTTTGGCTTCAAATTACACTTCTGATATACACGACAAGCC
AACGCTGGAAATGCAACACGATgaaaaagttGCGCTTTGGCTTCAAATTA
CACTTCTGATATACACGACAAGCCAACGCTGGAAATGCAACACGATacCT
TGATGGAAGAAGGGGAACAAAATTTGAGAAGGAAAGCTATTGACTTGTGT
TCGCAGCAACTATCAATCGGAATCGAACTCTTCAGCAAAGTTGTTACAAA
TGATTTTTCGGAAATTCCAGACGAAGAGAACGAAAGTGAATTTCCCAAAT
CTGACCATGAAACCAGCGACACGAGTAGTGATGAAATAGACGAACACAAC
GAATCGTGAacCTTGATGGAAGAAGGGGAACAAAATTTGAGAAGGAAAGC
TATTGACTTGTGTTCGCAGCAACTATCAATCGGAATCGAACTCTTCAGCA
AAGTTGTTACAAATGATTTTTCGGAAATTCCAGACGAAGAGAACGAAAGT
GAATTTCCCAAATCTGACCATGAAACCAGCGACACGAGTAGTGATGAAAT
AGACGAACACAACGAATCGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000302_pilon | genome | sc0000302_pilon:39944..45184 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2158-2370:5029 |
| Aaloc | 2086-2157:4783 |
| Aaloc | 1948-2082:4166 |
| Aaloc | 1804-1944:3906 |
| Aaloc | 1696-1800:3580 |
| Aaloc | 1606-1692:3401 |
| Aaloc | 1516-1605:3144 |
| Aaloc | 1396-1512:2902 |
| Aaloc | 1063-1395:2321 |
| Aaloc | 970-1062:2122 |
| Aaloc | 790-966:1759 |
| Aaloc | 553-789:1112 |
| Aaloc | 448-549:736 |
| Aaloc | 100-444:267 |
| Aaloc | 10-96:1 |
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