XLOC_043636 (mRNA) -

Overview


Name	XLOC_043636
Unique Name	XLOC_043636
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000145_pilon:643316..646726-
coding sequence from alignment at sc0000145_pilon:643316..646726-

mRNA from alignment at sc0000145_pilon:643316..646726-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_043636 ID=XLOC_043636|Name=XLOC_043636|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3411bp|location=Sequence derived from alignment at sc0000145_pilon:643316..646726- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGTAACATACGTCCTGAAGAAAATTGCATCAAAACATTAGACGAAAA
ATTAGAAATGGACCAACTTTTAAAACTCTTTACTATCTTTCCAACAGAAG
AGGATTTGCTATACGAAGCTTTAGAAGAACATCAAAAGATTTTCGAAGGT
TTAAGATACAGAGCGATCATCTCTGATGAGCAATATGAATCTCTATTACC
ATATTCTCGACTAACTGATTTCTCGCAATTCGATTACCATGTTTTACACT
TGCTTATCTACAAGTTTACTGATTTAAAGAAGCCAGAAACAGGTTGGGAA
AGTGAGCCTTTAGATGAGGACCAATCAGAATCGGCGTGTTATGTACGTGT
TTATCTAGCACGGAAAGCGATCAGTTTAATCAAACCACCCGTCTCGTACG
CTGTATATCATGGAATTTTTAATTACGCTCGGCAACCGTTGCTAGATCTT
GGTAATGAAAAACGATCATTGACATGTTTAAGTGTTCCAAAAAGATTTGG
AGCTACGCAGCCTCATCAACATTACGTTGGCCGTAAGGACGAGATAGCAG
AGATTGACGATTATCTACATAAACCAGTAACGCCGGATGCGCCACGTAAA
GCCGTCATCGTTCACGGCCCGAACGGTATCGGAAAACGTGAGCTGGTAAG
GATGTATATCCGGTTAAAGGGATATCGGTACGGAGATAATATCATTTGGT
TAGATTCCTCTACGAATTATAATTTACAGAAATCTATAAGAACTCTTTGT
CAAACTTTGAGTTTATCAATAGCTGACGCACATGGTGACGTAATGGATTC
CGTTGCACTAATGGAAAGCGTTCACGAATATTTTTTGAACTCAACTGTTT
TATTTATCTTTGAGAACGTGCAGTCAATGAAACAAATTGCAAGTTTGATA
TCCAGTAATGAACTCTCATATACTATCATAACGACTACTAAGATATTTTG
CGCCCGGCGTTTTAACCATACGTCCGTTAGCAAACTACCGTTAACAACAG
CTGAGGACTACCTTAAACGTGCATTACCGATTGGCGATCCTTTCCAAACA
GTAAGTCTTCGAAAACATCTAGCAAAATCACTTCGGTTCAATCCATTAGC
TTTAAGCTTGGCAACTGCATTCATTACTCATAGTCAGACAAGTACCTGGG
ATTATATTTATGCAGTGAAGACTGTTGTTAAAGAACACATGCCCAGAAGG
GTGGTTAACAAGAAAGATCGCATTCTTACTTCCAACTATACAGCATTTTA
TTTGACATGCAACGCGCTGACTGAGAACTCTTTATCAGTTTTCATACTCA
AAATATTATCCTATTTGAATAATTCATCCATCGATGCTACTCTGGTTGAA
GAGATTTTAAAACATTGTGAGATGCATGCAAATATGAGTAATTTCAACCA
AGCTCTGGATTTTCTGGTTAAACTATCTTTGATTCAAATCACCGAAGGCT
CTGGTAAGGATGAAACGAAACAGATTCTTATCCATTCATCCATACAAGAA
GTGAATCGTATTTATCAGATGGAGTATAGTACAAATAAACTACGACCTTT
TCATTGCATCTTAGATTATATTTTCAAATTCTCCGGCTTTCATCAACAAC
GTCATCTAGCCTGTGGACAAACATGGTTGGATCATTTAATGTATATTTTC
GAGGCTAAATCAGTGCATAGTCATTTTCTATTAAAATGCAAGCAAAATCA
GGACTTTTTACTTGATGTGTTCTCTTCAAAAGGACTTTGTCATGATTTGT
TACCGATATACAAGAAATTGGAAAACATTTGTGAGAAACGATCGAAGGAT
CGGTTTAACATTAAAATCATGATTGCTAAATGCTTTCAAAACCTTGGACA
GCTCGGTTTGGCATTATCTGAATTTGAAGATATTGAATATCGATTAATAA
AAAACTTCGGTGAAGACGATCCTTTATTGATTGAGACCAGATTCTTAAAA
ACCTCTTTAATATACAAACAACAAAGATATACGACTGCTCTTGAGCTGTG
TAATGGTATCTTAACACAAATGACAAAGTTGAAAATGGACAACCCTGAGT
TACGACTTCAGATTCAATATTTAGTTCTGAAATGTAAAAATAAGTCAGGT
GAGAAAACAACAAAACTTTCAGAATTGGAGACCATTGAAAAAGAGAAATC
GAATGTTTTTCAAGAAAATCATCCCTGTGTTTTCCGCATACAATATGATA
TTGGTAAACATCTTTTGAAAGCTGGAGATGTCCCTAAAGCCATCGCCAAA
TTCAGAACATTGGAATCAGTGCAATTGAAAATCCTTGGCGAGAAACATAA
AAGTGTATTAAAAACAAAGACAAAGTTAAGCGAATGTTTTAACCGGCTCC
ACGATTACGAGCAATCTTTACCATACCTCGATTACATTCGAAACAGTCAT
AAACAACTTTACGGACCCGAACACATTATTTCGTTACATTCTGAACGTGA
TTATGTCGAATGTTTACAAAACACGTGTCGCCACGATGAAGCTTATGATG
TGTTATCACGGATTGAAACTGTACAACAGAACCATCATGGATCCTACAAG
ATTGACGATATCATATCAACAAAACAGAATGTTGCGAATACGTTACAGGT
TATGGGTTACTATCCTGAAGCACTGGATAAATACCAGGACATGCTACAGA
TGCAACGAGCATATTACGAAGACGATACACATCCAGAGATTCTCAAAACT
AAACACTCATTTGCAAATTGTATACACGAGCTTGGTTATCTAGAAGAAGC
TACTAAACTGTTTAAGGAAATCGAACTCGAGCAAATCAAAAAGCTTGGTG
AGAATCACCAGGATGTGTTAAGGACGCAGAATAATCTGTCTGTTTGTCTC
ATTGATTCATGTCAGGAAAAGAAAGCTTTCAAGGAGTTGAAAGAAGTTGA
AGAGAAACAGAAATCCACCTTAACAACGCACCATCCAGAGCTCTTAGTAA
CGCAAACAAACATGGCGGTTTGTTTACACAAGCGACAATATTTTGATCGA
GCCTACAAGAAATACCAAGATGTTCTCCATTATCAAAAACAGCATTTTGG
AGAACGTTCTCTGGTGGTTCTGACATTGAAACATCAAATTGCCATATGCG
TACATGACCAAGGGAATTGTATGGAAGCTCTACAAAAATACGATGAAGTT
TACAATGCTGTATCAGCATATTTTGGTGCAGACCATCCAGAAACGTTGAG
AATTCGTTACAACAGAGCCATTTGTTATTACGATTGCAAGAAATATAAGA
GAGCTTTCCACGAACTGGAATTAGTAGAGGATCTACAGATGGATGTTCTT
GGTGAGAACCACCCTGATACTCTACGAACACAAATAAGCCTTAACATATG
TGGTAGGGATGTTAATAATGTCTTGCTGGGTGGACCAGGTAATATGTGCA
CTATCATTTGA

Coding sequence (CDS) from alignment at sc0000145_pilon:643316..646726-

>XLOC_043636 ID=XLOC_043636|Name=XLOC_043636|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6822bp|location=Sequence derived from alignment at sc0000145_pilon:643316..646726- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGTAACATACGTCCTGAAGAAAATTGCATCAAAACATTAGACGAAAA
ATTAGAAATGGACCAACTTTTAAAACTCTTTACTATCTTTCCAACAGAAG
AGGATTTGCTATACGAAGCTTTAGAAGAACATCAAAAGATTTTCGAAGGT
TTAAGATACAGAGCGATCATCTCTGATGAGCAATATGAATCTCTATTACC
ATATTCTCGACTAACTGATTTCTCGCAATTCGATTACCATGTTTTACACT
TGCTTATCTACAAGTTTACTGATTTAAAGAAGCCAGAAACAGGTTGGGAA
AGTGAGCCTTTAGATGAGGACCAATCAGAATCGGCGTGTTATGTACGTGT
TTATCTAGCACGGAAAGCGATCAGTTTAATCAAACCACCCGTCTCGTACG
CTGTATATCATGGAATTTTTAATTACGCTCGGCAACCGTTGCTAGATCTT
GGTAATGAAAAACGATCATTGACATGTTTAAGTGTTCCAAAAAGATTTGG
AGCTACGCAGCCTCATCAACATTACGTTGGCCGTAAGGACGAGATAGCAG
AGATTGACGATTATCTACATAAACCAGTAACGCCGGATGCGCCACGTAAA
GCCGTCATCGTTCACGGCCCGAACGGTATCGGAAAACGTGAGCTGGTAAG
GATGTATATCCGGTTAAAGGGATATCGGTACGGAGATAATATCATTTGGT
TAGATTCCTCTACGAATTATAATTTACAGAAATCTATAAGAACTCTTTGT
CAAACTTTGAGTTTATCAATAGCTGACGCACATGGTGACGTAATGGATTC
CGTTGCACTAATGGAAAGCGTTCACGAATATTTTTTGAACTCAACTGTTT
TATTTATCTTTGAGAACGTGCAGTCAATGAAACAAATTGCAAGTTTGATA
TCCAGTAATGAACTCTCATATACTATCATAACGACTACTAAGATATTTTG
CGCCCGGCGTTTTAACCATACGTCCGTTAGCAAACTACCGTTAACAACAG
CTGAGGACTACCTTAAACGTGCATTACCGATTGGCGATCCTTTCCAAACA
GTAAGTCTTCGAAAACATCTAGCAAAATCACTTCGGTTCAATCCATTAGC
TTTAAGCTTGGCAACTGCATTCATTACTCATAGTCAGACAAGTACCTGGG
ATTATATTTATGCAGTGAAGACTGTTGTTAAAGAACACATGCCCAGAAGG
GTGGTTAACAAGAAAGATCGCATTCTTACTTCCAACTATACAGCATTTTA
TTTGACATGCAACGCGCTGACTGAGAACTCTTTATCAGTTTTCATACTCA
AAATATTATCCTATTTGAATAATTCATCCATCGATGCTACTCTGGTTGAA
GAGATTTTAAAACATTGTGAGATGCATGCAAATATGAGTAATTTCAACCA
AGCTCTGGATTTTCTGGTTAAACTATCTTTGATTCAAATCACCGAAGGCT
CTGGTAAGGATGAAACGAAACAGATTCTTATCCATTCATCCATACAAGAA
GTGAATCGTATTTATCAGATGGAGTATAGTACAAATAAACTACGACCTTT
TCATTGCATCTTAGATTATATTTTCAAATTCTCCGGCTTTCATCAACAAC
GTCATCTAGCCTGTGGACAAACATGGTTGGATCATTTAATGTATATTTTC
GAGGCTAAATCAGTGCATAGTCATTTTCTATTAAAATGCAAGCAAAATCA
GGACTTTTTACTTGATGTGTTCTCTTCAAAAGGACTTTGTCATGATTTGT
TACCGATATACAAGAAATTGGAAAACATTTGTGAGAAACGATCGAAGGAT
CGGTTTAACATTAAAATCATGATTGCTAAATGCTTTCAAAACCTTGGACA
GCTCGGTTTGGCATTATCTGAATTTGAAGATATTGAATATCGATTAATAA
AAAACTTCGGTGAAGACGATCCTTTATTGATTGAGACCAGATTCTTAAAA
ACCTCTTTAATATACAAACAACAAAGATATACGACTGCTCTTGAGCTGTG
TAATGGTATCTTAACACAAATGACAAAGTTGAAAATGGACAACCCTGAGT
TACGACTTCAGATTCAATATTTAGTTCTGAAATGTAAAAATAAGTCAGGT
GAGAAAACAACAAAACTTTCAGAATTGGAGACCATTGAAAAAGAGAAATC
GAATGTTTTTCAAGAAAATCATCCCTGTGTTTTCCGCATACAATATGATA
TTGGTAAACATCTTTTGAAAGCTGGAGATGTCCCTAAAGCCATCGCCAAA
TTCAGAACATTGGAATCAGTGCAATTGAAAATCCTTGGCGAGAAACATAA
AAGTGTATTAAAAACAAAGACAAAGTTAAGCGAATGTTTTAACCGGCTCC
ACGATTACGAGCAATCTTTACCATACCTCGATTACATTCGAAACAGTCAT
AAACAACTTTACGGACCCGAACACATTATTTCGTTACATTCTGAACGTGA
TTATGTCGAATGTTTACAAAACACGTGTCGCCACGATGAAGCTTATGATG
TGTTATCACGGATTGAAACTGTACAACAGAACCATCATGGATCCTACAAG
ATTGACGATATCATATCAACAAAACAGAATGTTGCGAATACGTTACAGGT
TATGGGTTACTATCCTGAAGCACTGGATAAATACCAGGACATGCTACAGA
TGCAACGAGCATATTACGAAGACGATACACATCCAGAGATTCTCAAAACT
AAACACTCATTTGCAAATTGTATACACGAGCTTGGTTATCTAGAAGAAGC
TACTAAACTGTTTAAGGAAATCGAACTCGAGCAAATCAAAAAGCTTGGTG
AGAATCACCAGGATGTGTTAAGGACGCAGAATAATCTGTCTGTTTGTCTC
ATTGATTCATGTCAGGAAAAGAAAGCTTTCAAGGAGTTGAAAGAAGTTGA
AGAGAAACAGAAATCCACCTTAACAACGCACCATCCAGAGCTCTTAGTAA
CGCAAACAAACATGGCGGTTTGTTTACACAAGCGACAATATTTTGATCGA
GCCTACAAGAAATACCAAGATGTTCTCCATTATCAAAAACAGCATTTTGG
AGAACGTTCTCTGGTGGTTCTGACATTGAAACATCAAATTGCCATATGCG
TACATGACCAAGGGAATTGTATGGAAGCTCTACAAAAATACGATGAAGTT
TACAATGCTGTATCAGCATATTTTGGTGCAGACCATCCAGAAACGTTGAG
AATTCGTTACAACAGAGCCATTTGTTATTACGATTGCAAGAAATATAAGA
GAGCTTTCCACGAACTGGAATTAGTAGAGGATCTACAGATGGATGTTCTT
GGTGAGAACCACCCTGATACTCTACGAACACAAATAAGCCTTAACATATG
TGGTAGGGATGTTAATAATGTCTTGCTGGGTGGACCAGGTAATATGTGCA
CTATCATTTGAATGAGTAACATACGTCCTGAAGAAAATTGCATCAAAACA
TTAGACGAAAAATTAGAAATGGACCAACTTTTAAAACTCTTTACTATCTT
TCCAACAGAAGAGGATTTGCTATACGAAGCTTTAGAAGAACATCAAAAGA
TTTTCGAAGGTTTAAGATACAGAGCGATCATCTCTGATGAGCAATATGAA
TCTCTATTACCATATTCTCGACTAACTGATTTCTCGCAATTCGATTACCA
TGTTTTACACTTGCTTATCTACAAGTTTACTGATTTAAAGAAGCCAGAAA
CAGGTTGGGAAAGTGAGCCTTTAGATGAGGACCAATCAGAATCGGCGTGT
TATGTACGTGTTTATCTAGCACGGAAAGCGATCAGTTTAATCAAACCACC
CGTCTCGTACGCTGTATATCATGGAATTTTTAATTACGCTCGGCAACCGT
TGCTAGATCTTGGTAATGAAAAACGATCATTGACATGTTTAAGTGTTCCA
AAAAGATTTGGAGCTACGCAGCCTCATCAACATTACGTTGGCCGTAAGGA
CGAGATAGCAGAGATTGACGATTATCTACATAAACCAGTAACGCCGGATG
CGCCACGTAAAGCCGTCATCGTTCACGGCCCGAACGGTATCGGAAAACGT
GAGCTGGTAAGGATGTATATCCGGTTAAAGGGATATCGGTACGGAGATAA
TATCATTTGGTTAGATTCCTCTACGAATTATAATTTACAGAAATCTATAA
GAACTCTTTGTCAAACTTTGAGTTTATCAATAGCTGACGCACATGGTGAC
GTAATGGATTCCGTTGCACTAATGGAAAGCGTTCACGAATATTTTTTGAA
CTCAACTGTTTTATTTATCTTTGAGAACGTGCAGTCAATGAAACAAATTG
CAAGTTTGATATCCAGTAATGAACTCTCATATACTATCATAACGACTACT
AAGATATTTTGCGCCCGGCGTTTTAACCATACGTCCGTTAGCAAACTACC
GTTAACAACAGCTGAGGACTACCTTAAACGTGCATTACCGATTGGCGATC
CTTTCCAAACAGTAAGTCTTCGAAAACATCTAGCAAAATCACTTCGGTTC
AATCCATTAGCTTTAAGCTTGGCAACTGCATTCATTACTCATAGTCAGAC
AAGTACCTGGGATTATATTTATGCAGTGAAGACTGTTGTTAAAGAACACA
TGCCCAGAAGGGTGGTTAACAAGAAAGATCGCATTCTTACTTCCAACTAT
ACAGCATTTTATTTGACATGCAACGCGCTGACTGAGAACTCTTTATCAGT
TTTCATACTCAAAATATTATCCTATTTGAATAATTCATCCATCGATGCTA
CTCTGGTTGAAGAGATTTTAAAACATTGTGAGATGCATGCAAATATGAGT
AATTTCAACCAAGCTCTGGATTTTCTGGTTAAACTATCTTTGATTCAAAT
CACCGAAGGCTCTGGTAAGGATGAAACGAAACAGATTCTTATCCATTCAT
CCATACAAGAAGTGAATCGTATTTATCAGATGGAGTATAGTACAAATAAA
CTACGACCTTTTCATTGCATCTTAGATTATATTTTCAAATTCTCCGGCTT
TCATCAACAACGTCATCTAGCCTGTGGACAAACATGGTTGGATCATTTAA
TGTATATTTTCGAGGCTAAATCAGTGCATAGTCATTTTCTATTAAAATGC
AAGCAAAATCAGGACTTTTTACTTGATGTGTTCTCTTCAAAAGGACTTTG
TCATGATTTGTTACCGATATACAAGAAATTGGAAAACATTTGTGAGAAAC
GATCGAAGGATCGGTTTAACATTAAAATCATGATTGCTAAATGCTTTCAA
AACCTTGGACAGCTCGGTTTGGCATTATCTGAATTTGAAGATATTGAATA
TCGATTAATAAAAAACTTCGGTGAAGACGATCCTTTATTGATTGAGACCA
GATTCTTAAAAACCTCTTTAATATACAAACAACAAAGATATACGACTGCT
CTTGAGCTGTGTAATGGTATCTTAACACAAATGACAAAGTTGAAAATGGA
CAACCCTGAGTTACGACTTCAGATTCAATATTTAGTTCTGAAATGTAAAA
ATAAGTCAGGTGAGAAAACAACAAAACTTTCAGAATTGGAGACCATTGAA
AAAGAGAAATCGAATGTTTTTCAAGAAAATCATCCCTGTGTTTTCCGCAT
ACAATATGATATTGGTAAACATCTTTTGAAAGCTGGAGATGTCCCTAAAG
CCATCGCCAAATTCAGAACATTGGAATCAGTGCAATTGAAAATCCTTGGC
GAGAAACATAAAAGTGTATTAAAAACAAAGACAAAGTTAAGCGAATGTTT
TAACCGGCTCCACGATTACGAGCAATCTTTACCATACCTCGATTACATTC
GAAACAGTCATAAACAACTTTACGGACCCGAACACATTATTTCGTTACAT
TCTGAACGTGATTATGTCGAATGTTTACAAAACACGTGTCGCCACGATGA
AGCTTATGATGTGTTATCACGGATTGAAACTGTACAACAGAACCATCATG
GATCCTACAAGATTGACGATATCATATCAACAAAACAGAATGTTGCGAAT
ACGTTACAGGTTATGGGTTACTATCCTGAAGCACTGGATAAATACCAGGA
CATGCTACAGATGCAACGAGCATATTACGAAGACGATACACATCCAGAGA
TTCTCAAAACTAAACACTCATTTGCAAATTGTATACACGAGCTTGGTTAT
CTAGAAGAAGCTACTAAACTGTTTAAGGAAATCGAACTCGAGCAAATCAA
AAAGCTTGGTGAGAATCACCAGGATGTGTTAAGGACGCAGAATAATCTGT
CTGTTTGTCTCATTGATTCATGTCAGGAAAAGAAAGCTTTCAAGGAGTTG
AAAGAAGTTGAAGAGAAACAGAAATCCACCTTAACAACGCACCATCCAGA
GCTCTTAGTAACGCAAACAAACATGGCGGTTTGTTTACACAAGCGACAAT
ATTTTGATCGAGCCTACAAGAAATACCAAGATGTTCTCCATTATCAAAAA
CAGCATTTTGGAGAACGTTCTCTGGTGGTTCTGACATTGAAACATCAAAT
TGCCATATGCGTACATGACCAAGGGAATTGTATGGAAGCTCTACAAAAAT
ACGATGAAGTTTACAATGCTGTATCAGCATATTTTGGTGCAGACCATCCA
GAAACGTTGAGAATTCGTTACAACAGAGCCATTTGTTATTACGATTGCAA
GAAATATAAGAGAGCTTTCCACGAACTGGAATTAGTAGAGGATCTACAGA
TGGATGTTCTTGGTGAGAACCACCCTGATACTCTACGAACACAAATAAGC
CTTAACATATGTGGTAGGGATGTTAATAATGTCTTGCTGGGTGGACCAGG
TAATATGTGCACTATCATTTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_043636	XLOC_043636-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000145_pilon	genome	sc0000145_pilon:643316..646726 -

Properties


Property Name	Value
Aaloc	1-3411:3412

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XLOC_043636 (mRNA) -