XLOC_029140 (gene) - C. hemisphaerica

Overview
NameXLOC_029140
Unique NameXLOC_029140
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_1:135677..139593-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029140 ID=XLOC_029140|Name=XLOC_029140|organism=Clytia hemisphaerica|type=gene|length=3917bp|location=Sequence derived from alignment at scaffold_1:135677..139593- (Clytia hemisphaerica)
TCTCTGTAATTCGAACAAATATTCCCCGTTCAAGTTCGAATTAGAGAGAG
TCAACTGTATTTTTACTGTTAGGGACTGTCTAGGAAAGGCTGTTCGGATT
ATATTTTCATTATATTTCACTTTTCATTTATGAAGGATCTCTTTGTTTTT
CATTCAGTATAATAAGTTTGATACGATAAACANTATGAAGGATCTCTTTG
TTTTTCATTCAGTATAGTAAGTTTGATACGATAAACAAATAATCATAAAA
TGATTTTCTAAACGCTTGCGTTATAAAAATGACCGACTAAATTGTAATGC
AATGAGACATATAGCTCGATGGAACGGTCGATTGTTTTGTGTATCATTTT
GGTAGCCATGACAACATGGTGCGTCGAGCAAGAAGACTGGGATCGCTACT
TAGACAACCGTTATAATTACATCAGTCATTTTAGTGAAATGTTGAGGAGA
AAATCTGATAACTATGCTGGAAAACGTGATGTGAGTAAAAATACACGTTT
TTTTTTATAAGAACGTCAAAACTTTTCGAAGCCTTCGGATGTTCTTAGTT
TTTTGGATTTGAAGCCTAAAAATGTTCTTAAAATGTTCTTATTTTCAGCA
TTTTTTGAGCATTTTGATGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCC
AAAGCCTTAGTATGTTCTTAGAATGTTCTTAAATTTTTGGGCTCGAAGCC
TTATGTTCTTATATAGTTTGTTCTTATAAAAAAAAAAACGTGTAGATCAA
CTATCGGTATAAATAAGGGTAAAGGGATTTATAATGACCAATCTTCACCT
ATTCCTTAAAATTAGAAATTATCACGGACTTAAGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAAACGTCTTTGCAATCTTTTTGTTTACATTTTGTCTTCATTC
ACTTTCGTTTACTGTTGAAAACATAACAAAGTTTTAGCTATACTCTTAAA
CCGCGTATAATAGGCGGTTAAGCCAATCAGCTTTCGAGCTGACATCAGCA
TGTATTTCAGAGTATACCATGGAAGTACCAGCAACTCCGACCCCTACTAT
AACAGTCAGGAACTATTGCAAATTAGGCTATGATGGCCAAACTAGGATGT
TCGCCTAATTAGGCTAGGATTTATATCCTAGTTAGGATATTAATGGCTTA
ATTTGGATATATGAAATATTCAAACCTAAATATCTTGAGAACAAGTAAAA
TCCGCGTCAATCTTACTATATGGACTTGTTACTTGTACTAAGAAGAGTAT
TTAAAGCGAAAAACTTTTTTCTTTTTAGAGCGGAGTGAAACGATGTGATT
ATTTTATTAAAATTTAGCTTAATTTGGCCATGATAGCCAAATTAAGCCGA
TTTAAGTTCTACATGCAGCGCGCCATTTTTTGTCTGAAAAATGAAAAAAA
CTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATCTTGAAATAATTTCGACTGTACTGCTGTATATATG
TAAACATAATTTTGCTGAAACAGCATAATATTTAAAAACTGAATATTTTC
TCAGCCCGCTCAAATTTTACTCAAAAAACATTCGGAACTCATTCAAATAA
ATAAGAATTTGACATTTTAAGCTAAATATTGACGCAGATTTTTAAATACA
AGTCAAAAATTGGAATTTTGTTCCTTCCAGCCTAATTAGGCTACAATTTC
TGGCTTAATTAAGCCATCGTATCCAAGTTAGGCCAGAATCGGCGAACATA
GCCTGATTTGCAATAGTTCCTGACTGTATAAGTATAGCGCTATTCCCTTT
AAAATTTGTGGAAGCTTTTACTGCTCGACCAAAACATCCTAAACTGTTAA
TAGTTATAAAAAAGGCGAAAAATGAGGGTATTGATTTTTTTTGAAAAGTA
ATGTTTTAGCATTTAGAACATAACTTCTGGAGTTTATCTTTTCTTTTTCT
AATGCAAAACGATAGATTCTTTAACAGTCGATAGACCTCGAGAAAATTAA
CTTCAAAGAGGGGGACTTTTTTCTGGAGCACCCGGTAGTTTTAGTGATAA
GCAAAGGTTTTCAAAACTTTTATTCAGGTGAGCGAACTGAGTAAGTACTA
CATTGTAAGAACATCAAACGTAAACTATAAGTGCTAATCTTTAACACAAA
TTGCTACCTTCGGCTTAGGGTAAAATTAGCTGGTATTATATCACCAACGC
TTCAACTCATGTTAGAATATTTCGAATAGGAATATCAGAATTGGTTGGTG
AATTACCGTGAGACGGAACGTGAGGACCAGAGAACACACACGGAACACGA
CGATGAAAAAGTGGAACAGACGCACGAAAATCACGAAGTCATGCGTGAAC
GACAACGTGAACACAGTCATAATATGGGACGACATATGATCGAGAAGAGA
AGTAAGATCCATAGATTTATAAAGCCCGAATGGCTAGATGTCGTGCTTTG
GCTGAAAAGTGTGCCGAGGTTAGGTAGGAAATCCTACCTAGGTCTACCTT
GTCACCACGTGCCGCTTGTCGATAACAGGGTCCCAAATTTAATAATTTGC
CAGCGACACGTCCCATTCGGCTGTCAAGTTCAGTGCCCCCCCCCGGACCT
TTGTGCACTTCAAAACTTGCCACAGCAAACACAGAGCTTTTATAGAATAC
AGTGTGTTCCATAAAAGATTCCTCTCTAATTGATAATTTCGGCGAGTTTT
TCATGAGATACTCTGTAGAAAAGGATTCCTATGAAATTATATCCCTAGGA
ATCAACAGTCAATGAGTACATATCCCTAAAAATTCTCTGAACCTAATTTT
GTAACTAATTATAACTTTTTTTCACCAATATACTTTTGTCGTTTCCACAA
CCATAATAAAAATTGAGGTAATAATGGGAGGAGAGGGCAATAACGAACCA
TTGAACCCAACTGTCCTGCCAAAAAAATAATTCACTTTTATTTTTCAGCT
CTGGAAAGTATAATTCGAACAAAGAAGAAAGCAAACCAATTTCTCAAGTA
CCGAAGAAGGATTTGAACACAAAATGTAGTCGAAATAAAGAAGTCTAAAG
TTCAAAAGAAGTGGACCATGATAGTACCTCATATGTCAACATGTAACAAG
ATAATTGAGACCTTTCTGGAGAGCTTGATTATACTCTGTTAAGCATTGAT
GCAGAAATGCCATTAGCATCTTAATTAAAACTTGAACCTTTTTTATTGTA
AACGAGGTCAAATTGCATCATATCACAAAATTGGACAAGTATCAGATTTT
CTGAAGACATTAAAATTACCTGGAATGCATAATGTATAAATTGTGCTGAA
AAGAAGAAAGAAAAAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00045577TCONS_00045577Clytia hemisphaericatranscript
TCONS_00045576TCONS_00045576Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00045577-proteinTCONS_00045577-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:135677..139593 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.05	0.11	0.05	0.27	0.05	6.09	7.89	5.86	2.95	1.33	3.62	8.98	8.2	5.46	11.73	11.2	8.22	0.11	0	9.65	6.13	4.16	4.52	6.38	5.79	1.8	0.44	0	0