XLOC_037760 (mRNA) -

Overview


Name	XLOC_037760
Unique Name	XLOC_037760
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000081_pilon:593525..597928-
coding sequence from alignment at sc0000081_pilon:593525..597928-

mRNA from alignment at sc0000081_pilon:593525..597928-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_037760 ID=XLOC_037760|Name=XLOC_037760|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4404bp|location=Sequence derived from alignment at sc0000081_pilon:593525..597928- (Clytia hemisphaerica_ch_hm2_pilon)
TGCTGGCCATCAGGAGATGATTGGGAAGGCTTGAATAAAACATTGAATGG
AAATTTGAAGGATCCTGTTAATCCGATATCGGCATGTTTCAAACCAGCTG
GAGAGACTGATGCAATGAGCAAGGAGCGAGAAGCAGAATGTTCACAGCAA
TTACAAGACTTCAAATCAGATCCGTACTGGGTGCGAAAACATTCCGGACT
CACACAATCAGCAGGTATGTATAGGTTTAAATATAGACATTAGTAGGTTT
AATTAAGTCTGGTTGATTTTCAGGTTTTCATTGATTTTGCCCAATTTCCC
CGATAAGGCCTTTTTGACAGTTTAATCATTATGTATATATTTGAAGAACA
AATGATCGAAAGTGGCAAAAAATTTCTAAAAGTAGACAAAAATTTAAAAA
TCTTCCAATTTACACCTTTCAAATTGTCCAGAATAACCAAAAGTCGACTC
TGTCAGATACACATCTTGAAAATTGTGGAATTTGGAGCCTGTCAGATATC
TTCAGAGCCAAAAAAATGACCCTGACCAGCGGCATGGCTTTTATTCTTAA
AATAAAATTTATATTCTTTTTAAATCAAAAATAATGTAAAAAATAGATAT
CCTCATTTCAGATTTATTTCTTCGAAAAAAGAGAATTTGACTATTCTATA
TCCCTGTAACATCTAAGATCTGATTTTATATTTTAGGTCAAGTAGGGGCA
TGGAATTCAACGGAAAGTGTCAAGGTAGTAGAAGCCAGGACAGTCGCACA
CATCAAAACCGCCGTCGACTTTGCACGCAAACACAATATGCGTATAGTTG
TTAAAGGCACAGGTAGGTATCTCACATCTTTTTACCAAAGAAATTGATTC
GTACTTTATTCAAGGAAATATATGTTTTTGAAATTTATATATGTTTATTG
ATTGATAAAATTGCGTGATGTCGCTTAGAAAAACTTAAAAAAGCCTCCAG
AAACTTAAACTTTGATCACTTCTATTGGATCGTCAATCTTTTTTACTCAG
AGAAATTATTACGTCGAGGGCCAAAAAGATCGTCAAACTATCATACAAAA
TATCTTTCTGAATCTTTCAGGTCACGAATACAACGGCCGTTCCAATGCAC
CTGATTCACTCCTTATATGGACATATCACATGAGCGAGATTATATTCCAC
GATCAACTCTCATGGGATTGTCCTGCATGCAAAGACGAGAAGGTTACCAG
TGTCACTGTAGGCGCTGGTGTCGTTTGGGGAGATATCTATGCTGCGGCAA
ACAGGAAAAACTTGGTAAGATTATTACACGCTTTTTTATAAGAACAAACT
ATATAAGAATCTTTTAAGGCTTGGATAACCAAAATGTTAAGAACAAATTA
AAAACATTTTAAGGCTTTGTGGACTCAAAAACACCTTTTTTAGGAAAATG
GGTAAAAATGGTCCACAAGATGGTGAAAATAAGAACATTTCAAGAACATT
TTTAGGCTTGAAACCTAAAAAGTTAAGAACATCCCAAGGCTTCAAAAATT
TTGGATGTTCTTATAAATGAAAACGTGTACACGCTTTTTTAAAAGAAAGA
AGCACAAGAGGCTCAATTATAAAAGCAATCCCAACCTCACCTTTCGAAAT
GGCTAAGATAATACTGACTTTAAGTCCTTTTCGAATCAATAAGTGAATAA
ACGAAGCAAAATCCGGAAATTATGACCGAACCGCCACAGCCAAAATCCAT
AGGTTCTTATAAAAAAACGTATATTGCCGTACTTTAGTACGTTCAAGGAG
GAACATGCCCAACAGTCGGTGTCGTTGGATTCACCCTGGGAGGAGGAATT
GGTATCTGGTCCAGAAAATATGGTCTTGGTTCCACCAACTTATTACAAGC
GACTGTTGTGACGGCTGACGGCGACATTAAACGAGCGTCCAAAGTCGAGA
ATCCTGAATTATACTATGCTCTTCGTGGAGGTTAGTATTTTTTTAGCATG
TTTATCTTATTTTTTGTTCGTAGGTTTTTTGCTTTTAAACACTCTTTTTT
TTCTCAGTTTCTAAAATCAGTATTATCTTACTTTATATAAATCTAAGCTC
TTGTGCCGTGTCAAAAGTTAGAATTTAATTTCCCATGTACGAAGATTTCG
CCTCTAGCTTTATTTCATACTGATTGTCAGATTGTTATTATATTTAACTG
AAGAATCTTTCTGTACATACTCCATTTGTGGGTAAAGAAGAGGAAGTCCG
ATACCAACTTCTGCTTTCAACGACAAAAATTTACTTCTACTTCTGTATGT
ACTTTACGGACCAGAATAGATAGAAAGTCTCAGAAGAAAAAAAAGAAGAT
AAAGTGATCGAAGACTTTTAGTGGGTCACGGGATTTGCAGCCAGTTGGTT
CCGCTAAATCTGATCTGATCTAAGCAGGAAGGGAGAGGGCGAATTTGTCT
TGAACGCCCTCACGACGCCCTCTTGGTTATTGCTCTTTATTTAGCTTATG
CTTTATATAGACCCTAGAAGCAGTTTCTCAATCCCGCCAATCAAAATATT
TTTAACGGAGTTTTTTTTTAAAGTGATAGCTACATCGATAGTGTAAGATC
TACTTTAACTTGCATACTAGCAATGTAGCGTAGTTTGTCGTTAGGCAAAG
TGTTAACACTACAATGGCTTCTTTGTGGGCACCACTTTCAAAAAAACTTC
GATCAAAGATGGCGAAAATAGCTCGGTCCAGTGTTAATAAAGGTCAGTGC
TTACAATTAATGTTTTCTTTTTCTGATCAAATCAGGTGGTTTTGGATTTG
GCATTGTTGCTGACATGACCATTCGAACCCACCCATCACCTAAACAAGTC
ATCCTTGTGAAAGGCGACATTAGTACCTATTGTGAGAGCTCATTCAAAAA
ACTACTCGCACACTTTTTCACAATCTACAAAGAAGATTTGGTTGGACCAC
ACTGGGGTGATTATGCGAGAGTGAAAGTCCCCGGCAAACATTCAGGAGAG
AAATACAAATGGGTATTGTCAATTAACATGAAAGCTGTGGACATTTCATT
AGAAACAGCGAAAAGAGAGTGGGCGTCTTTCATTCGGTTCGTCAGTATCG
GAGATCTCAGCCACATGTACAAATTCGAAAAATCTAAATATGATGTGTTA
AAGTTCTTGACTATGCCTGGAAATACATTCTGGAGCCGTGCCAATCCTGG
TACAGTACCAACACTGCAAGATGAATTTGAGCCACATGCAGCTTACAACT
GGGGTACGGAATTGGACAAGGGATCTGAACAGTTCAAATACTGGCTTCAA
TTCGGTACACGAAACTTGAGAAATGACCAAATATTGACCGACCCAACAAC
AGGTGCAGACAAACTCATAACATTCTTTAAAGAGCTCGGCGATCTACCCA
GCACAGCACGCCTTAGCATGGTGTTTAAGGGTGAGGACAACATATTCAAC
TGTGCAAGCAACGAACTGGCAAACACTCCAATGGCCCGAATGAACGAAAG
CTTCGCAATGATTTGGGCGTGGGTCGGAGTCCGCAGATTTCATCCAGATA
TACCCATATCATTACAGAAAGATTCTAAAAATACCACATATACAGAAATC
AAGGATGAATTCTGTAAAGGTAACAGTCTCGAAGCCTGTCCTGCATCAAA
AAAAGTACAAAAAGCATTTCAGAAATTTAGAGAAGCAACACCAGGAGCGG
GGTCTTACTTCAACATTGCCGATTATTTTGAGAAGGATTTTAAAGAAGCT
TTCTGGGGAAAAGAGGTGAGTTCATTGTTAACAGATATCTTATCTAAATA
TCTAGATGGAGCTAATCTTATCTTTGTCAGGCTATAGGTCATAAAGCAAT
ATTGAATACCAAAAGATGTCACGCTAGACCACAGTAAATCTTCGCAAAAC
AAGTCAACTCAAAATATTGGTATATGATAATAGGAACATTGTCGAATTTA
GTTTAGATGGTTAAACGTTCCCGGTGGTGTCGTTTCAGTGTGATTTCCCA
CACTGTGACCTGGTTACTACCAAAAAATTTTAACCGGTTACTTTTTCGTA
GCGGCTTTTTGCGCAATGCAAAAGGAAAAGGAAACGGTTAATAAATACAA
TAATGACCGGTTCTTTCGGGCTGTACTGTGAAATATTGCCCTCGGTCAAC
GCAACAGCCTCGCAAGCTCGGCCGTTACTTGACCTCGGGCAATATTTCTC
GGTAAAGCCCTCACTAACCGGTCATTGTACTAATAATAAAAAATTGTTTC
TATTTTGTATGTTTTTTCTTTACACAGATTTATAAGAAGTTGAGGAAATT
AAAGGATAAGTATGATCCACATGGATTGTTCTACTGTCACCATTGCGTTG
GATCAGAAGATTGGGAATATAAGAGCGAAAAGCTATGCAAAAAAGGACCA
GCAAATGAAGAAACGGCCCAAAAAGCACCAACGCCAAACAATGAAGAACT
CTAA

Coding sequence (CDS) from alignment at sc0000081_pilon:593525..597928-

>XLOC_037760 ID=XLOC_037760|Name=XLOC_037760|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3768bp|location=Sequence derived from alignment at sc0000081_pilon:593525..597928- (Clytia hemisphaerica_ch_hm2_pilon)
TGCTGGCCATCAGGAGATGATTGGGAAGGCTTGAATAAAACATTGAATGG
AAATTTGAAGGATCCTGTTAATCCGATATCGGCATGTTTCAAACCAGCTG
GAGAGACTGATGCAATGAGCAAGGAGCGAGAAGCAGAATGTTCACAGCAA
TTACAAGACTTCAAATCAGATCCGTACTGGGTGCGAAAACATTCCGGACT
CACACAATCAGCAGTGCTGGCCATCAGGAGATGATTGGGAAGGCTTGAAT
AAAACATTGAATGGAAATTTGAAGGATCCTGTTAATCCGATATCGGCATG
TTTCAAACCAGCTGGAGAGACTGATGCAATGAGCAAGGAGCGAGAAGCAG
AATGTTCACAGCAATTACAAGACTTCAAATCAGATCCGTACTGGGTGCGA
AAACATTCCGGACTCACACAATCAGCAGGTCAAGTAGGGGCATGGAATTC
AACGGAAAGTGTCAAGGTAGTAGAAGCCAGGACAGTCGCACACATCAAAA
CCGCCGTCGACTTTGCACGCAAACACAATATGCGTATAGTTGTTAAAGGC
ACAGGTCAAGTAGGGGCATGGAATTCAACGGAAAGTGTCAAGGTAGTAGA
AGCCAGGACAGTCGCACACATCAAAACCGCCGTCGACTTTGCACGCAAAC
ACAATATGCGTATAGTTGTTAAAGGCACAGGTCACGAATACAACGGCCGT
TCCAATGCACCTGATTCACTCCTTATATGGACATATCACATGAGCGAGAT
TATATTCCACGATCAACTCTCATGGGATTGTCCTGCATGCAAAGACGAGA
AGGTTACCAGTGTCACTGTAGGCGCTGGTGTCGTTTGGGGAGATATCTAT
GCTGCGGCAAACAGGAAAAACTTGGTCACGAATACAACGGCCGTTCCAAT
GCACCTGATTCACTCCTTATATGGACATATCACATGAGCGAGATTATATT
CCACGATCAACTCTCATGGGATTGTCCTGCATGCAAAGACGAGAAGGTTA
CCAGTGTCACTGTAGGCGCTGGTGTCGTTTGGGGAGATATCTATGCTGCG
GCAAACAGGAAAAACTTGTACGTTCAAGGAGGAACATGCCCAACAGTCGG
TGTCGTTGGATTCACCCTGGGAGGAGGAATTGGTATCTGGTCCAGAAAAT
ATGGTCTTGGTTCCACCAACTTATTACAAGCGACTGTTGTGACGGCTGAC
GGCGACATTAAACGAGCGTCCAAAGTCGAGAATCCTGAATTATACTATGC
TCTTCGTGGAGTACGTTCAAGGAGGAACATGCCCAACAGTCGGTGTCGTT
GGATTCACCCTGGGAGGAGGAATTGGTATCTGGTCCAGAAAATATGGTCT
TGGTTCCACCAACTTATTACAAGCGACTGTTGTGACGGCTGACGGCGACA
TTAAACGAGCGTCCAAAGTCGAGAATCCTGAATTATACTATGCTCTTCGT
GGAGGTGGTTTTGGATTTGGCATTGTTGCTGACATGACCATTCGAACCCA
CCCATCACCTAAACAAGTCATCCTTGTGAAAGGCGACATTAGTACCTATT
GTGAGAGCTCATTCAAAAAACTACTCGCACACTTTTTCACAATCTACAAA
GAAGATTTGGTTGGACCACACTGGGGTGATTATGCGAGAGTGAAAGTCCC
CGGCAAACATTCAGGAGAGAAATACAAATGGGTATTGTCAATTAACATGA
AAGCTGTGGACATTTCATTAGAAACAGCGAAAAGAGAGTGGGCGTCTTTC
ATTCGGTTCGTCAGTATCGGAGATCTCAGCCACATGTACAAATTCGAAAA
ATCTAAATATGATGTGTTAAAGTTCTTGACTATGCCTGGAAATACATTCT
GGAGCCGTGCCAATCCTGGTACAGTACCAACACTGCAAGATGAATTTGAG
CCACATGCAGCTTACAACTGGGGTACGGAATTGGACAAGGGATCTGAACA
GTTCAAATACTGGCTTCAATTCGGTACACGAAACTTGAGAAATGACCAAA
TATTGACCGACCCAACAACAGGTGCAGACAAACTCATAACATTCTTTAAA
GAGCTCGGCGATCTACCCAGCACAGCACGCCTTAGCATGGTGTTTAAGGG
TGAGGACAACATATTCAACTGTGCAAGCAACGAACTGGCAAACACTCCAA
TGGCCCGAATGAACGAAAGCTTCGCAATGATTTGGGCGTGGGTCGGAGTC
CGCAGATTTCATCCAGATATACCCATATCATTACAGAAAGATTCTAAAAA
TACCACATATACAGAAATCAAGGATGAATTCTGTAAAGGTAACAGTCTCG
AAGCCTGTCCTGCATCAAAAAAAGTACAAAAAGCATTTCAGAAATTTAGA
GAAGCAACACCAGGAGCGGGGTCTTACTTCAACATTGCCGATTATTTTGA
GAAGGATTTTAAAGAAGCTTTCTGGGGAAAAGAGGTGGTTTTGGATTTGG
CATTGTTGCTGACATGACCATTCGAACCCACCCATCACCTAAACAAGTCA
TCCTTGTGAAAGGCGACATTAGTACCTATTGTGAGAGCTCATTCAAAAAA
CTACTCGCACACTTTTTCACAATCTACAAAGAAGATTTGGTTGGACCACA
CTGGGGTGATTATGCGAGAGTGAAAGTCCCCGGCAAACATTCAGGAGAGA
AATACAAATGGGTATTGTCAATTAACATGAAAGCTGTGGACATTTCATTA
GAAACAGCGAAAAGAGAGTGGGCGTCTTTCATTCGGTTCGTCAGTATCGG
AGATCTCAGCCACATGTACAAATTCGAAAAATCTAAATATGATGTGTTAA
AGTTCTTGACTATGCCTGGAAATACATTCTGGAGCCGTGCCAATCCTGGT
ACAGTACCAACACTGCAAGATGAATTTGAGCCACATGCAGCTTACAACTG
GGGTACGGAATTGGACAAGGGATCTGAACAGTTCAAATACTGGCTTCAAT
TCGGTACACGAAACTTGAGAAATGACCAAATATTGACCGACCCAACAACA
GGTGCAGACAAACTCATAACATTCTTTAAAGAGCTCGGCGATCTACCCAG
CACAGCACGCCTTAGCATGGTGTTTAAGGGTGAGGACAACATATTCAACT
GTGCAAGCAACGAACTGGCAAACACTCCAATGGCCCGAATGAACGAAAGC
TTCGCAATGATTTGGGCGTGGGTCGGAGTCCGCAGATTTCATCCAGATAT
ACCCATATCATTACAGAAAGATTCTAAAAATACCACATATACAGAAATCA
AGGATGAATTCTGTAAAGGTAACAGTCTCGAAGCCTGTCCTGCATCAAAA
AAAGTACAAAAAGCATTTCAGAAATTTAGAGAAGCAACACCAGGAGCGGG
GTCTTACTTCAACATTGCCGATTATTTTGAGAAGGATTTTAAAGAAGCTT
TCTGGGGAAAAGAGATTTATAAGAAGTTGAGGAAATTAAAGGATAAGTAT
GATCCACATGGATTGTTCTACTGTCACCATTGCGTTGGATCAGAAGATTG
GGAATATAAGAGCGAAAAGCTATGCAAAAAAGGACCAGCAAATGAAGAAA
CGGCCCAAAAAGCACCAACGCCAAACAATGAAGAACTCTAAATTTATAAG
AAGTTGAGGAAATTAAAGGATAAGTATGATCCACATGGATTGTTCTACTG
TCACCATTGCGTTGGATCAGAAGATTGGGAATATAAGAGCGAAAAGCTAT
GCAAAAAAGGACCAGCAAATGAAGAAACGGCCCAAAAAGCACCAACGCCA
AACAATGAAGAACTCTAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_037760	XLOC_037760-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000081_pilon	genome	sc0000081_pilon:593525..597928 -

Properties


Property Name	Value
Aaloc	1708-1884:178
Aaloc	730-1707:1668
Aaloc	535-726:2668
Aaloc	343-534:3333
Aaloc	217-339:3717
Aaloc	1-213:4405

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XLOC_037760 (mRNA) -