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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014809 ID=TCONS_00014809|Name=TCONS_00014809|organism=Clytia hemisphaerica|type=transcript|length=1798bp
ATAACTCTATTTCAACGTTCACTGATATCAGAGATCGATAACGAGAGAAG
AAGACAAGAGACGAACGGAAACCAACAGCAATTTCCAAAGCATTAAAGGA
TCGTTAATATTTATAATCGTGTTTTATAACAAAACGCAATCAATATGCCT
GTCATTGATCACTTCGTGAAACAGCACTTCGCGTCTACACACGTCAACAG
CAAGGAGAAAGAATCAAGTATCTTAGACGGGATCACATCTTCACCTCTCT
TTACAGCTAAGCAACCAAAGCATCATCAAGAACAAGTAAAAACAACCATG
GAGAAAGAAATCTTTGAACAAGTACACAGTCTACGACGCACAATGGAAGG
CAGAGTTGACTTCGAAAAGAAGAGTGTCTTTTTGAGTGAGTTAGACCATG
GAACAAGTGACATTTTACGATGCAAACGTATCATCGTCATCGGGTCAGGA
TCATCACATCACGTCGCAATCTCAACTCGACAATTAATGGAAGAAATGGT
CGAGTTACCCGTATTCATCGAGTTGGCGAGTGATTTCCTCGACCGTGAAG
TGCCGATCTTCCGTAACGATGTTTGCATCTTTTTGAGTCAGTCAGGAGAA
ACAACAAATGTCGTTGAATCATGCCGATACTGTCTTCAACACGAAGCTCT
CACGATTGCCGTCACAAATACAGCTGATAGCACCTTGGCTAAAATGTCGA
ACTTTGTTTTGGACATTAACGCCGGTAAAGAACATGGGATCACAAGCACC
AAGACGTACACAAGTCAATTCATGGCTATGACCCTTATCTCTTTACACTT
AGCATACGACAAACGTCCCAAAGCAGAACGTATCGAATCAATCGTTGAAG
AAATGCAACATTTACCCGATAAAATCGCTACAGTGTTGGAAGCTACCGAA
AAATACCGTAAAACAGCTCTCTCTATGAAAGACGAGGAGAGTATACTCGT
CATGGGCCGCGGCTACCAACAAGGTACCTGCCATGAaggatctttcaaat
tcaaggAGGTAACAGGCACCCACTCGGAGGGTATCCACTCTGGTGAATTA
AAGCATGGACCATTAGCTTTGATCGACGATCAAATCCCGATTATAATGAT
CGTAATGAGAGATAACATTTATGATAAATGTTGCAACGCCATTCAACAGG
TGAAAGCAAGGGGCGGCCGCCCTGTGCTTATTTGCGAAAACGAAGATACT
GAAACACGTAAATGGGCGGATGTTGTTTTAGGTGTTCCAAAGACTATTGA
CTGTTTAGCTGGTATTTTAACTGTGATTCCTTTACAGTTATTATCTGTGT
ATTTAGCAGAATCCATGAACAAGAATGTCGATCAACCACCAGCTCTGGTG
AAGACGGTGGTTGAGAAATTCATTCCCAATAACAGAATGAGTTAAATCTT
TTgtgttattttgtttttgtaatttattgttttatatcatttttattatt
atttgacTTTTCGCACATGTTTTCATTGTGTTTTGTTATTGTCATCTAAG
TTGCATTTTGAACATGTCTTTTCAGCAATAAACTGAGCTGAGTCTGAGCC
AACGCTTCAAGATTTTTTACAGNaccaggtggtcgaaacttaacaaataa
ccaaCGCTTCAAGATTTTTTACAATGCATTTGTAGAAAAGCCAAAGTAAA
CTTCAAGTCTAAAGCGACTAAAATGttcagaaattaaaatttgtaTATCA
AACAGTTGTAAATATACGATATTCCATATACAAAATATGAATAcagtttt
tgtaatttttcaaaatttttgaagcgaaatatacaaggaaaaaagtta Run BLAST on NCBI transcript from alignment at sc0000198:323276..325623- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014809 ID=TCONS_00014809|Name=TCONS_00014809|organism=Clytia hemisphaerica|type=transcript|length=2348bp|location=Sequence derived from alignment at sc0000198:323276..325623- (Clytia hemisphaerica)
ATAACTCTATTTCAACGTTCACTGATATCAGGTGATTATATGCTTCCCTA
GCGTTTTGTACTGGCTAGGGAAACCGACTAGATTCTAATGTTTTAAGTTT
TACTGGGCATCTTTTTACATTCGACACTGTAATATATTACGAAAATACTT
TGTCAATCAATCATCTTTTTATTATTGAGTACGTCATAAATCAATAAAAC
TATTTCTCAATTCCTCGTGAGATTCACTTACTAATGATCAGTTTTTCGCA
AAAAAATGTCAAAAACAATAATTTATAGACGATGAAACTGTTGGGTGCGT
CAACTAAGAAACTCTCCAATTTAATTATAGACGGAAATCTAATATAGGAC
TCAAATTATAAAAGGAAAAAATGTATCGCATTTTTTGTTATATTTAAATG
CCTGTCTTACATAATTGAAATCTAATGATCAAAATAATATCCTGTTAATG
ATTAACTTGATCGCTGATTGGTTCATTAGAAAGGAAAGTAGCCAATCATT
GGGCTTGCTTTTGATATTGTAATTGATGATTTCAGAAACATTTAAATAAT
TTGAAATTGTTTCCTTTTTTCTTTATAACAGAGATCGATAACGAGAGAAG
AAGACAAGAGACGAACGGAAACCAACAGCAATTTCCAAAGCATTAAAGGA
TCGTTAATATTTATAATCGTGTTTTATAACAAAACGCAATCAATATGCCT
GTCATTGATCACTTCGTGAAACAGCACTTCGCGTCTACACACGTCAACAG
CAAGGAGAAAGAATCAAGTATCTTAGACGGGATCACATCTTCACCTCTCT
TTACAGCTAAGCAACCAAAGCATCATCAAGAACAAGTAAAAACAACCATG
GAGAAAGAAATCTTTGAACAAGTACACAGTCTACGACGCACAATGGAAGG
CAGAGTTGACTTCGAAAAGAAGAGTGTCTTTTTGAGTGAGTTAGACCATG
GAACAAGTGACATTTTACGATGCAAACGTATCATCGTCATCGGGTCAGGA
TCATCACATCACGTCGCAATCTCAACTCGACAATTAATGGAAGAAATGGT
CGAGTTACCCGTATTCATCGAGTTGGCGAGTGATTTCCTCGACCGTGAAG
TGCCGATCTTCCGTAACGATGTTTGCATCTTTTTGAGTCAGTCAGGAGAA
ACAACAAATGTCGTTGAATCATGCCGATACTGTCTTCAACACGAAGCTCT
CACGATTGCCGTCACAAATACAGCTGATAGCACCTTGGCTAAAATGTCGA
ACTTTGTTTTGGACATTAACGCCGGTAAAGAACATGGGATCACAAGCACC
AAGACGTACACAAGTCAATTCATGGCTATGACCCTTATCTCTTTACACTT
AGCATACGACAAACGTCCCAAAGCAGAACGTATCGAATCAATCGTTGAAG
AAATGCAACATTTACCCGATAAAATCGCTACAGTGTTGGAAGCTACCGAA
AAATACCGTAAAACAGCTCTCTCTATGAAAGACGAGGAGAGTATACTCGT
CATGGGCCGCGGCTACCAACAAGGTACCTGCCATGAAGGATCTTTCAAAT
TCAAGGAGGTAACAGGCACCCACTCGGAGGGTATCCACTCTGGTGAATTA
AAGCATGGACCATTAGCTTTGATCGACGATCAAATCCCGATTATAATGAT
CGTAATGAGAGATAACATTTATGATAAATGTTGCAACGCCATTCAACAGG
TGAAAGCAAGGGGCGGCCGCCCTGTGCTTATTTGCGAAAACGAAGATACT
GAAACACGTAAATGGGCGGATGTTGTTTTAGGTGTTCCAAAGACTATTGA
CTGTTTAGCTGGTATTTTAACTGTGATTCCTTTACAGTTATTATCTGTGT
ATTTAGCAGAATCCATGAACAAGAATGTCGATCAACCACCAGCTCTGGTG
AAGACGGTGGTTGAGAAATTCATTCCCAATAACAGAATGAGTTAAATCTT
TTGTGTTATTTTGTTTTTGTAATTTATTGTTTTATATCATTTTTATTATT
ATTTGACTTTTCGCACATGTTTTCATTGTGTTTTGTTATTGTCATCTAAG
TTGCATTTTGAACATGTCTTTTCAGCAATAAACTGAGCTGAGTCTGAGCC
AACGCTTCAAGATTTTTTACAGNACCAGGTGGTCGAAACTTAACAAATAA
CCAACGCTTCAAGATTTTTTACAATGCATTTGTAGAAAAGCCAAAGTAAA
CTTCAAGTCTAAAGCGACTAAAATGTTCAGAAATTAAAATTTGTATATCA
AACAGTTGTAAATATACGATATTCCATATACAAAATATGAATACAGTTTT
TGTAATTTTTCAAAATTTTTGAAGCGAAATATACAAGGAAAAAAGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014809-exon-sc0000198-1575043694:325593..325623 | TCONS_00014809-exon-sc0000198-1575043694:325593..325623 | Clytia hemisphaerica | exon |
| TCONS_00014809-exon-sc0000198-1575043694:323276..325042 | TCONS_00014809-exon-sc0000198-1575043694:323276..325042 | Clytia hemisphaerica | exon |
| TCONS_00014809-exon-sc0000198-1510915933:325593..325623 | TCONS_00014809-exon-sc0000198-1510915933:325593..325623 | Clytia hemisphaerica | exon |
| TCONS_00014809-exon-sc0000198-1510915933:323276..325042 | TCONS_00014809-exon-sc0000198-1510915933:323276..325042 | Clytia hemisphaerica | exon |
| TCONS_00014809-exon-sc0000198-1491911889:325593..325623 | TCONS_00014809-exon-sc0000198-1491911889:325593..325623 | Clytia hemisphaerica | exon |
| TCONS_00014809-exon-sc0000198-1491911889:323276..325042 | TCONS_00014809-exon-sc0000198-1491911889:323276..325042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:323276..325623 - |
Blast
BLAST of TCONS_00014809 vs. Swiss-Prot (Human)
Match: GFPT2 (Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Homo sapiens GN=GFPT2 PE=1 SV=3) HSP 1 Score: 378.637 bits (971), Expect = 1.785e-121 Identity = 180/354 (50.85%), Postives = 248/354 (70.06%), Query Frame = 1
Query: 298 MEKEIFEQVHSLRRTMEGRVDFEKKSVFLSELDHGTSDILRCKRIIVIGSGSSHHVAISTRQLMEEMVELPVFIELASDFLDREVPIFRNDVCIFLSQSGETTNVVESCRYCLQHEALTIAVTNTADSTLAKMSNFVLDINAGKEHGITSTKTYTSQFMAMTLISLHLAYDKRPKAERIESIVEEMQHLPDKIATVLEATEKYRKTALSMKDEESILVMGRGYQQGTCHEGSFKFKEVTGTHSEGIHSGELKHGPLALIDDQIPIIMIVMRDNIYDKCCNAIQQVKARGGRPVLICENEDTETRKWADVVLGVPKTIDCLAGILTVIPLQLLSVYLAESMNKNVDQPPALVKTV 1359
M+KEIFEQ S+ TM GRV+FE +V L L +I RC+R+IVIG G+S+H A++TRQ++EE+ ELPV +ELASDFLDR P+FR+DVC F+SQSGET + + + RYC ALT+ VTNT S++++ ++ + INAG E G+ STK YTSQF+++ + L ++ D+ R + I+ ++ LP+ I VL EK AL + + S+LVMGRGY TC EG+ K KE+T HSEGI +GELKHGPLALID Q+P+IM++M+D + KC NA+QQV AR GRP+++C +DTE+ K+A + +P T+DCL GIL+VIPLQLLS +LA +VD P L K+V
Sbjct: 326 MQKEIFEQPESVFNTMRGRVNFETNTVLLGGLKDHLKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLLALRYCKDRGALTVGVTNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFISLVMFGLMMSEDRISLQNRRQEIIRGLRSLPELIKEVLSLEEKIHDLALELYTQRSLLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALIDKQMPVIMVIMKDPCFAKCQNALQQVTARQGRPIILCSKDDTESSKFAYKTIELPHTVDCLQGILSVIPLQLLSFHLAVLRGYDVDFPRNLAKSV 679
The following BLAST results are available for this feature:
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