XLOC_035866 (mRNA) -

Overview
NameXLOC_035866
Unique NameXLOC_035866
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000194_pilon:326821..336332+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035866 ID=XLOC_035866|Name=XLOC_035866|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9512bp|location=Sequence derived from alignment at sc0000194_pilon:326821..336332+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGAATTGCTGTCTTACGTCTCGTCAAATGGTTCACCCTTGCTGCTCT TGTTTACGTACTCTTTGTCACTTTACAGCTCACGTTTTTCCACCACGTAA CAACGTCTACGTCACATACGGTGTCGTCTAATCACAATCACCATGGTTTA AAGGAGTCCACTACGCAATTGGAAAATGGTAAGCTTGTcccaaatttttc tatttttaatagTTGATAGGAGCCCTAAATTGTTGAAGTTAAAATGAAAA CactaaaacataatttttgttaCAAAGTCCAGATAGATCATAACCACAAA TTCCAcgatactcttaggtgccaaataaacggtcccccccgcttgttaat tttacgaaaattttccaacccccccggaccttattaggacccccccgttt attaattttaaagaatattttcagttggctaaaagaagtccccttatttt gctccaaaaagcctgattttagcctatatttaccttattttggggttttc ataagtacaatttccaacccccccggcaattaggtcccccccgtttattg aaattttaaaaattttccaacccccccgtttattccaacccccccgttta tttggcacctaagagtaaggcTATTAGTCACGTGCAACTTATATATAACG CTAACTTATATAGACGCTGAAAATTTATCACATATTGTTGATTAGTTTAA CAAAAGACGTAGTAAACTCAAGCAGTGAAAATTTCTTAATTCCATCTATT CTCTAATAGGCgggggggggTCAAAGTCAAGGAGGCATGTTTTCTTCCTG AATTTCAATCTTTATTTGACCTCTCCTGAAACAGATGTTTAGCTTATTTT GGGTTCCTTCCTTCTGGTGGTATGAtatggtggtccttttgcgagaggtt aggaacctttatttttgtaatatttgtTCGTGCTACTTACGTTTACTATa gatgaaaacaaaacaaaaaaaagcaacaaaaaaacagATGTTTTGGCGAA TCTTTGACAATTCAGCCCTTACACAGTTGCtgaaaaagatagtatttaca ATACATATTTACATAGTTTTACACCCTGTCTATATTATACCGTATAACTT TTCTTTCGTCAATGTTATTGTCTTCTCAACTCGACCGTCTGGTCTATGTT CTGACGTCGTTCGTTCATCCTCACTTGACGGAAATGCTCTCTCGTGTTAT GGTGCGGGTACGCTAAAATCCTCACACCTTTTTGGCcgtataaaagaaaa acaatcacTAAATTATTGATAGTGATGGCTAAATTTTGAAAGAGTTCTTT CACTGGGAGTTCTTGTGCGTTAACGATCACAAAGTTAACGCTAAATACTA TCGTCAATGTGAAGGTAGCGTACATTATTACGACACCATCGTTAATGACA CTAGGTAGATTTCTCCCTCTGAAGGCTTGGATCGAGCACATCAGCTGAAT GACCATGGCTGAGCCGATTAAGATACTATAATGGAACGAATTGTTGCAGT AATGCATACTGATCAATTGCTCAGGGTATAAAGCCTCGGCTATCATAATC GGTCGTCGATAGATGGTTGTGGCGaataaaaaattaatgcaagtcaaaaa taaaagtaaagttGCTCCTTGGATCGCCTTAGTTCGGTTTACCTCTTCAG CAGTAACTTTGACTCTGCTCAAAAACGCTTTTAAAAGCTTTTGCGACTTT ATGAATACGATAGCAACGTTTATGGTATAGAGCACACTCATTGAGCACAA TCGTGCCGTACACGAAATGAAATTAGGTTTCCCGATAAAAGTGAGGGGAA TGGTGATCAATATGAGGCCTATTATGGACATGTGTATCATGGAGATGGTA TAATCTGAGCACGAAACGATCGGTGTTTTTCTGTTAATCAAAAACACTGC CATTGTAAAGACGGTTAACGTTAAACCAAGGACGGTTAAAGCcaacaaaa caacaaattcAGTATTTGAGAAATCAATATTTCTGTTTGTGTACGGGTCT ATACACTCTGTGCGTTTACCATTATCAATTTTGTATCGTCCGGTACATTT CTGACAGGCAGTATTCCCGGACATtgttttgtatgtatttttcgGGCACA AGGCGCATTTCCAAGTGAAATGGCTTTCAGATACATTACCATAGATAAGT TGATAACCTTTTGAGCATACAGGTTTCTCGCAAATGCTTAATGCTGAGCG GTTACCGATCTGGGTCCGAACCGTGTCTTGGCTTGCTTCATTATTGAGAT TTAAAATGTAAGGATCTCCCGGTCCTTGAAATATGTTATATTCAACGTTC CCGAAGATCGTCTTGTGTAAAGATTCGGCTCGATATTTACGGTCGTTTAG AAATTTAAATACGTTGAAATCTCGGTCCGGTTTGTTGTATTTGACACCCA TCACTAGATAGTCATATGCTATCATTTTGTAAACCATTTGATATCTTTGG CGATCTGCAATTGCCGGCGATAAAGGAGGTGGTTGGTAATAGTTGGATGG ACTCATCGCCGCTGTTCGGTCGTGCCGAAAAAGGTCAATATAGATAAGCT GgaaaagaaaatgcaaaaggttattttcgaaaaacacTGACgtttatgaa aaaaaagaagcttaAAAGGTTCCCCAAATATTATTTTTCCTACCCCATAG GGAAGTGTCTTCTTTCCTTATTATTGACAGACTGTATTTTTCGAATGAAT CTCTGGGACTGTTGATTTGACAAAAACTTTATTGATGATCAGAAGACTCT GCCGGCAGTATCAGTCCTTGCCATATCGACCCTTATTATTCTTCCAGTGG CAGTGTAAACATCAAAAAGGGGCCGCGAAGAAAAAGAGAATGTTAAAGGA AAAATGATCATACCGATGGGTTTTTAAATATGCCCAGGTGACGATACATA TTCGTCAGATCATGAGTGACATACAAATAAGGTGGGTAACCATACAAATT CCCAACCTTAACCACGAATTTCATGGTCTGAGAAAACCCACCGAAAAGCA CTATGGGTAGATTTTGTGGTGGCATAATGAACGATGTCTGGTTCGTTATT TCGTCTGGGTCAATTTCGTAAAGCTCGAAACAAATGTTGAGCTCTTTTAG TTTTTCAATGCTCCTCCGGTAATACAGAAGGTATGGAAATTCTCGTTTGG TAATCGCTATCAATTTGACTTTCCGCCAACCGAAATTCTGTACTATTTGT ATGAGGTCGTTTACGAAACTCTGTATAGGATTATAAATTGAACCATCTGC TAATAACTCTGTATCAAGGTTTATGATTGGGATATCATCGATTACTGAAG CTATTAAAAAGTCAGTCATCCTTTTCGGCATTTGAGCAAATATGGCTAAG ATTTTCGAATTTGTATACTTGTGATATCCATACTGTAGCTTGTAACGTTC ACTTAATGTTAAATCTTGTATGATTTCAGCCAGATATGTGGTATTATCAC AAACATCATAGACTTCGTGTTGAATTAGTTCCCCTGTATTATGTTCGGCA TTTCGTTCATCTATGATCTGTCGGTAATACTCGGTGACCAAGCTTGTCTC GATTAGAAATTGTGTTCTGTTTTCCACACTTTCTGAACAATTCGAGTAGA TTCCAATAGTATATAGTTGGAAAGTCTGCGTAGTTACAAAAGGTAACCAA ATAAGTAAAATCATGCAAGAGACCAGCATTTTCACCATTCTGGTTTCACA CACCATGAAAATTCGCCTGAAGTTTTACTGGTTAGTTTCTTTCATTGATT TGATCTCCAATAATCTAAAAATCCAATTCGACTTGTTGTATCATGCGGCT CAGTTTGAATTCTATTAACTGACACGAACAGACTGACATCTATAACAGAA TTATATTCAGACCTACTAATTTGTCCTAATTACTATAGTATAAGAGTCTA AGCTCTATGGTCAAAAATGTTATCGGCAATAGACTATAGTAAAAAGAAGT ATTAGGTGCAATTTCTATAACAAAGTTCTCATATAAATGTCATTTTCAAG TTCATATTTAAAAAGCTTGAAATGAATTCATTCTAAGATATTTTAACATA ACGAACCTATTTTCTCACGGACTCAATAAATCTTTAAGAACTATTGATAA TACGCAGTATGTTATCTTGCTTTGAAATGACACGTGATTTTTAATTGATT GAGATTAGGTATTTCCAATCTGTAATTTTACTACAGAGGAATCTCGGATG TctcctttaactcgaacaagttttaccTTCAGTTGATAATGCCTTGTTTA AACCTTACTACATTGCTCCAAatttccataactcaaacaagtttgtGTTC TCTGTGCGAGTTCGAGTTATGAACGGCTCTAgctcaacgtccatctaacg acGTTTAAATGGATGATAGCTGGACGTCGTGTTGATGTTTTGACAACGCT AGTAACTTGGTCGAACTGACGGGGTTATGAAGGAAAGGACTCTCTGAGAA TAGGTCGAGCCATTCGAGCCAGGTCCAGACATTCTTTTTGCCAAGTGAAC TAAAGCACTGACTAGGAATCGAATCCTGGCCATTTACTGCAAAACTGCTA CGTGTCTGTTGTCATGCTATATGATTTATCATTAATGGTATATTCTTGAG TTATATACTTTAAAAGCATTCGCTTAAATTGACTTCCAAAATTTAGGCAT TCTTCTACATTTTCAGTGTGATCAGTAGCACGCCCTTAAAACAATCTCGC ACTttcacgtttttataagaacaaactaaataagaacatgaagCTTCCAT agccaaaaatattaagaacaagttaaaaatatttgtgGGCTTTGAGCAGT TAAAACCCACAATTTCTTAGCAATTtgtacaaaaatactcacaaaatggc ggAATGAAGAATTGGTGAAATAATCatggtgcaaagaagacaccGAATAA TGAATaacattaaatttttagttttctggttctgaaaaatttaacgtGTA AATAGCTAAGAGGATAACACTAAGATGATATGAAAGTAATGATCAATATT CGCCCTGAGACTTGAAAAACTTATTATCTCAAATCTATTTTTGTcacgaa aaatgaaaatttgtacaATGAAGTAGAATAGAAAACTAGGattgtttaaa aagttttacGACAACAATGTAAGCGGCACATAGAAAATGTTATCTTATTC AATAAAGTGAGACTTGGCCATTAATcggtaaaattaaatttctagttttc acttttttatcaaatttatctgGCCCAGCAAGAAATGTTTTCAAGTTTCA GACAAATCTTGTTAAATTgaagaaattattttaatatgcaggtgtaaagc aaataacaattgaatgtgTTTAGCCATTTTAACATAGCTGGAAAAGTAAA GCTGtttttttCTATTACGACCTTCAAGGGACCAATAATTTTGTAACACT ACCCAGTCACGGGGTGGCCATCTCTTTAACTCAAATTATAAAAAGGTGTC TCGCTGCCTACCTGTCCTAcctttatatttataaaaatctaactttcatg agaacagaaaatctgaaaagggaTTTTGGATAAATTGATCGaaatgattt gaaaacttttttgggaaaatcagactaaaatattcttacagcattcttag gttaggatcctgattcagactagatttgacacagggggggcacgcagtta ctacaagacatgatgtgtagtaagtgctttttcaacactttttttcagga ccaccaccctttgcagttactacaccttggtagtaactgttttcagaaaa gatttccaggtaccacccctgtttttgagtgatattatcaaaaacatgct cgaaattaccctaaattgcgattatttttcaacctaaagccatttttgtg ctagattttcttttaatttacttggttaacagctgttgagaacattttaa tgataattagggaaagcataatttcaaagttgggtctgagaaaagtttca aattttttttcgtccatttataactaaaatattttttttaacaaaaaatt ttttcacaaaaaaattcattttttgtaaaaaattttgaaagttctttaaa ataattaaaatataagcacttactacaccaaaagtgctagttttagtgtt tggcaccacccccaaacagcagttactacactgtgtagtaactgttttca taacttctgaatacagtaccaccacggtagtaagtgtcatactgtcttgt agtaactgcgtgcccccccccctgtttgaCATTTAGTActtacgtctcaa gcataaaatggcatttttgtgaaagaagtgagctttacttgggggtaatt gacaatttataatcgaaaatgctctaaaaatagcATTCTTAGCTTTAAAC AGCAAAATTCCACGATGATAATTATTCTTaacattattcttaattttttg gccattttcatcttggacattcttataaagtgtattctcataaaaaaaag cgtgtactaggTCCCTACtcctaaaataaattttaattgcCAGATTAGAg tgccgtggtatagtggtagtcgaccttggcttctgtgcaggaggccaggg ttcgattcccactcacggcagttcacttggcaagtgatcgttccttcgcc cgggtcaacccatgccatgtgaggggaattgggtagtcagttcaaggtga tGATGggaccatagaggtataaagaaaaacaggagttgaatgtttcggta attggtcgctaaagtcttttgatttcttttataaaatgtatcaaaagaaa ttctaagctcgcccgatgaaataagactttttagtagaactcaagtttgc tatgaacattctaataatcagtattgaagattctcgccttttaatatacg aaaattagataaaaattcgtccacgaagcaagttcatgttccatttcgct atccgttcaattttgttttgaaaagatattttctcaagccagaaaatgaa aagttctttataagcacacacgatttcagactcaatctgtagacataaag tcgctggagaattttggaggaaagtatcaagcaatagagttcaccttaag gaaaacattgatcgaaaaatcttatcatttgatgaaggattgccaagttt acaggcctttttttagtccaaatattttcttacactgatgtcagaaacaa tgaatctcgtctcatctaatttctaaagcttaaatgagccaataggattt cacctatggataaaagagctcattaaaaatgcacgatatatgagattatg agcatgcatacatcgtaacttttttaatcgtagggcgagcttggttacaa tagcatacttctcctgtttctttatacctccatgatgggacgctcattag taagcgtctatagttgcgagaacaggcctctaaagcctcctgcaactcaa ccaaatagaaatagaaaattacaTAATATGGCGTTAGCGCATATCACAAC AACAAAGtcgtaaaataaaacataaggaAGGCTTAACAGGAAGGTAATTA AATAGGGGGTTTGAAATTAGTTAAAGGGGTCAAACAAAAGGGGTAATGGT AAATAGTCTTCTGAGGAGCAAATATAATTTGATATTGACTTTAATCATGC GAATATGGGGAAATGGGGAAGGGGATAAATGGCTTCCTGAGATTATGTAA CCTCGGGTGTCTGCACGAATCCAAGGGTTAATTTGGTGATGTGTTCAGAA TTTCATTGAAACACTACAAAGGACTCCAAAAACGGGATTGGGCTATACTA TTATTctcttttgattattttatttttcagaacaGTCAACCCTCAACAAA GATGAAACCATAAAGTCTGGAGATTCGTTATTCCACGATGTGCAAACGTT GCTGCTCTTTATCGGATACCCTCGTAGTGGCTCCACTCTTCTCGGCTCCA TCTTAGACGCCCATCCTAACATCGTCATCGCTAATGAGTACAATGTCTTT GCTCAATGGAAAAACTACACTTTCAAACAGAAACAGAATCGAGATTATTT ATTTAATCAGTTATGGCGAAACTCTAAACTGGAATCTAAGAAACTGCAAC GAGCATCGacgaaaaatttcttcttttcttaTCACGTTCCTGGCACGTGG CAAGGCAGATACGAAGGCTCTATCAAGGTAAGTAATTCTTTTCATTGATT GGCTCAGTTTTTTACTagcttaaggccggtctccactttcgtgcgacatg agcgaaaactttttgacgtttttgtaaggtcattggtcggttgaaaaatg aagcaattccattggtcgaaattgacgtaacggatgaaaaaaagtagaac ttctttcaattttttttgtttgcgcgaaacttttttatgacgtaatcttt tcttcaggcaaaagaGGTTAAGAAAGTGGAGACAGGTGTCATGATATCTT TCTAGTTTGTGACGTTTTACTGTTGagaaagatatttgtgattgaaACAT TATtagaatgtcaaaaattgaataCAAAGTTCAAAATGCGAAATTGTATT GTAATAACTTAGGGCTGAAAACGAAACTCGATTACTCATATTGAGCCGTC AACCCGATTTTCCTGTATGTttgcaaaaaggtaaaaaaggggGGCAAATT GTCATTTCGTTATGATTGTAACCACTGTTTTGTAATGTTAGATCATCGGT GACAAGAAAGGTACCAGCACTACAAGACACATCATCAATTCACTCACACC ATCTCGATACAACCATTTCAAAGATGTACAGAACGCCATTCAAATACCCG TCAAATTCATTCACCTCGTCCGAAATCCTTTTGACAATATCGCTACCATG ACTCTGCGGGCCGGTGACCCTGGACTACGGAAGAAAGCGGAACGTAACAA TTTACAGGTatttgtaattctttttttcattatgGCTGCTTGTACTGtac tgtattcatgatattcatgacgtaatgttttcaacggaaagaccccggtg cTTGCTAGACTATGTATTTCCAAATGCTCTTGGGTCACCTGATCGCATAG TGTTGTTTGATGATTCCTGGATCGTTGGTGAAGTTGTAGAGAATACCCTT TCTGTATCAAAACTGTATCAAAATAAAGTGGGAAAGAAACATCAGAAAAT AATAGACTTATAGTAACACATCTCTATAATTTCATACCttcatttcattt gatttttttttttttcaatcaaacttcagttCAACAACCCAATACTGTTA CGACGTCAAATGAGAACCTACTTTAAACTTGTCGATCAAAACGTTGAATT ACGTGAAAAATTCGGCGAAAACGTTCTCGATGTTCATTACACTAGTTTTA TACGGCAGCCGAAAATGTGGCTCAAAACTATTTGTGATTTCTTGGAAGTT TTCTGTAGTGAAGATTACCTGAATAAATGCGTGAAGATTATCTTTCCAAA GGAAACGTACACGCGACGCTACATCGTATGGCCGGACTCGTTCAAAGCGA AAGTGGAAGAGAAAATTAAGCAAGTGGAATTTCTGAACGGGCTGAGTttt gaaatcacgtga

Coding sequence (CDS) from alignment at sc0000194_pilon:326821..336332+

>XLOC_035866 ID=XLOC_035866|Name=XLOC_035866|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2148bp|location=Sequence derived from alignment at sc0000194_pilon:326821..336332+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGAATTGCTGTCTTACGTCTCGTCAAATGGTTCACCCTTGCTGCTCT
TGTTTACGTACTCTTTGTCACTTTACAGCTCACGTTTTTCCACCACGTAA
CAACGTCTACGTCACATACGGTGTCGTCTAATCACAATCACCATGGTTTA
AAGGAGTCCACTACGCAATTGGAAAATGATGAGAATTGCTGTCTTACGTC
TCGTCAAATGGTTCACCCTTGCTGCTCTTGTTTACGTACTCTTTGTCACT
TTACAGCTCACGTTTTTCCACCACGTAACAACGTCTACGTCACATACGGT
GTCGTCTAATCACAATCACCATGGTTTAAAGGAGTCCACTACGCAATTGG
AAAATGaacaGTCAACCCTCAACAAAGATGAAACCATAAAGTCTGGAGAT
TCGTTATTCCACGATGTGCAAACGTTGCTGCTCTTTATCGGATACCCTCG
TAGTGGCTCCACTCTTCTCGGCTCCATCTTAGACGCCCATCCTAACATCG
TCATCGCTAATGAGTACAATGTCTTTGCTCAATGGAAAAACTACACTTTC
AAACAGAAACAGAATCGAGATTATTTATTTAATCAGTTATGGCGAAACTC
TAAACTGGAATCTAAGAAACTGCAACGAGCATCGacgaaaaatttcttct
tttcttaTCACGTTCCTGGCACGTGGCAAGGCAGATACGAAGGCTCTATC
AAGaacaGTCAACCCTCAACAAAGATGAAACCATAAAGTCTGGAGATTCG
TTATTCCACGATGTGCAAACGTTGCTGCTCTTTATCGGATACCCTCGTAG
TGGCTCCACTCTTCTCGGCTCCATCTTAGACGCCCATCCTAACATCGTCA
TCGCTAATGAGTACAATGTCTTTGCTCAATGGAAAAACTACACTTTCAAA
CAGAAACAGAATCGAGATTATTTATTTAATCAGTTATGGCGAAACTCTAA
ACTGGAATCTAAGAAACTGCAACGAGCATCGacgaaaaatttcttctttt
cttaTCACGTTCCTGGCACGTGGCAAGGCAGATACGAAGGCTCTATCAAG
ATCATCGGTGACAAGAAAGGTACCAGCACTACAAGACACATCATCAATTC
ACTCACACCATCTCGATACAACCATTTCAAAGATGTACAGAACGCCATTC
AAATACCCGTCAAATTCATTCACCTCGTCCGAAATCCTTTTGACAATATC
GCTACCATGACTCTGCGGGCCGGTGACCCTGGACTACGGAAGAAAGCGGA
ACGTAACAATTTACAGATCATCGGTGACAAGAAAGGTACCAGCACTACAA
GACACATCATCAATTCACTCACACCATCTCGATACAACCATTTCAAAGAT
GTACAGAACGCCATTCAAATACCCGTCAAATTCATTCACCTCGTCCGAAA
TCCTTTTGACAATATCGCTACCATGACTCTGCGGGCCGGTGACCCTGGAC
TACGGAAGAAAGCGGAACGTAACAATTTACAGttCAACAACCCAATACTG
TTACGACGTCAAATGAGAACCTACTTTAAACTTGTCGATCAAAACGTTGA
ATTACGTGAAAAATTCGGCGAAAACGTTCTCGATGTTCATTACACTAGTT
TTATACGGCAGCCGAAAATGTGGCTCAAAACTATTTGTGATTTCTTGGAA
GTTTTCTGTAGTGAAGATTACCTGAATAAATGCGTGAAGATTATCTTTCC
AAAGGAAACGTACACGCGACGCTACATCGTATGGCCGGACTCGTTCAAAG
CGAAAGTGGAAGAGAAAATTAAGCAAGTGGAATTTCTGAACGGGCTGAGT
tttgaaatcacgtgattCAACAACCCAATACTGTTACGACGTCAAATGAG
AACCTACTTTAAACTTGTCGATCAAAACGTTGAATTACGTGAAAAATTCG
GCGAAAACGTTCTCGATGTTCATTACACTAGTTTTATACGGCAGCCGAAA
ATGTGGCTCAAAACTATTTGTGATTTCTTGGAAGTTTTCTGTAGTGAAGA
TTACCTGAATAAATGCGTGAAGATTATCTTTCCAAAGGAAACGTACACGC
GACGCTACATCGTATGGCCGGACTCGTTCAAAGCGAAAGTGGAAGAGAAA
ATTAAGCAAGTGGAATTTCTGAACGGGCTGAGTtttgaaatcacgtga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_035866XLOC_035866-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000194_pilongenomesc0000194_pilon:326821..336332 +
Properties
Property NameValue
Aaloc742-1074:9180
Aaloc526-741:8642
Aaloc181-525:7783
Aaloc1-177:1