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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014672 ID=TCONS_00014672|Name=TCONS_00014672|organism=Clytia hemisphaerica|type=transcript|length=2032bp
GTAAAAGCTGTTTGGCTACGCCATCGTCAGAACAAACATAAAAGCAAAGC
AAAGGAATCgataaaaatACCACTCTCGTCATGACCATGAAGATTGTAAG
AGGGAATGGAAAAGAAATCACTTCGTATATACGAgacaataaaagtgaaa
tcataGACGCCTTTGAGACACCCGGCGCCCTTCTCCTCCGTGAATTCGAC
ACAAATCAGATTGAAATTGATGAAGTTGCCCGATTAATAGGATATACACC
AGCGCACACTTATATTCCAGGAATCGCTCCAAGGAAAGCTGCTATAGAAG
GAAATCCGTTCGTATTTACTTCGACAGAAGCACCGCCCCATCTCCCTATC
CTTCCTCATACTGAAATGACTTATTGGCCGGACCCTCCCCATCTTATACT
GTTTCAGTGCAAATTTCTTGATAGTTCATGTCCTCAAGTCAATGCAAATG
AAACTGTGCTATTTGACATGAAACTAGCTGCTGCTGAGCTAaacgaaaat
ctgcttgagaAGTTAGCAAATGGCTGCATTATGGAACGAAAATACCCTGG
CAAATTCAACCCAAACTGGGATATTGAGGACTCTATTGCAGGAGGTTCTT
GTTGGCAAAAAGCTTTTGCTACTGAGAATATAGCTGATGTGGAGTCGATA
TGTAAATTGAATAATGTTGAATTTGAATGGATATCAACAGTAAGCAAGGA
ACCACCAACATTGGTGACAAGATATAACTCATCCTGGTATGTCAATCAAC
GATTGGTTTTACAGACACCCTTGCTAGGGAAAGCAGTTTACCAAGACATG
ATCAAACGTTTTCCCCAAAGGTTTGACAACCAAAAAATGCACGGAACTGT
GGAAGGTGGTTCAGTTGCCCCAAAAGTGGATCTCTTACATCCTAACATTC
CTGGCAAACCTTTTCTTGAAGAATCGGAAATTGTTGCGTTGATGGAAGCT
CTTTGGAAACATGTTGTGTTTATTGAGTGGGAAAAAGGTGATGTTGTTTT
GATAGACAACATGAATATGGCTCATGGAAGGATGAATTGTGCAGGGAAAC
GGAGGATTGTTGCCTCAATGGCACACAAGCGTTAAAGATTATCTGGTCAA
TGAGAAATATTGGAAtcataaactttttttaatttattaatttACGCATC
TGGAAAGTATGATTATATTTCCGtttatcatttttcaaattttacacgTT
TACGTATACTTGtaatttgtaattgcttgcagtattcctTTGAATTCATT
TATTGTTCGGTTTCCCAAATGCCTAAGGGTGTTTGGCATTTGAAATGTCA
ATTTGAGCGGAGGAATCCCCTTTTCAagcatttcaaaacaaacaaagaga
aaataatCACATTTCACAGGTTATGACGAAAAATACTATGGAAACGGCCG
AAAGTATCAAAATTGAGTCCCAAATGCCAAATACCAAAAGCCGTCATATG
TAAATGAGTGTGTGGTCTGAAACTGTTGATTGCATCTTTTTGTTTGTGAT
AGTGATTCCAAGACCACCGACACGAGGcggaaatatgaaaaaatttcttt
tacgATCGTTACATGTGTAACCATTGAGGAGAGCTGATAGGAGTGATGCT
CATATGACTTCTTCAAATGGAACAAAATATTCTCTTGTCACAGGTACGGT
CCTTATGATGTAGGTTGTGTTGTATACTGTTTGTGAATGCACAGTACGCT
GAATGGGGATGCATCCTGGCAATTTTGCTCAGTGACTTTTTTCAACGata
ataacactaaatcgaAGGATTAGGAAAGTAACCAATCTTTGGACCATATT
GAACGATGGTATTCCACTAATCTTCTAACGCTTCGATAGAGCCAAGATCA
GTGAGGCCATCAGCAAACGCGATCTTCTTAGCTGTGCTACCTGCTGCTTC
TAGAAGTGGCAAAATCGCTAGCGAGTATGTTGTCATTGATGTTGGATTTG
GATTACCCTTCTTTCGATGCTAATTCTTTGCCGCGAGTTAGGAATAGACG
TGCTGGTTTGGCGTAGCTGCTTTGTAcaaccc Run BLAST on NCBI protein sequence of TCONS_00014672-protein >TCONS_00014672-protein ID=TCONS_00014672-protein|Name=TCONS_00014672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MTMKIVRGNGKEITSYIRDNKSEIIDAFETPGALLLREFDTNQIEIDEVA
RLIGYTPAHTYIPGIAPRKAAIEGNPFVFTSTEAPPHLPILPHTEMTYWP
DPPHLILFQCKFLDSSCPQVNANETVLFDMKLAAAELNENLLEKLANGCI
MERKYPGKFNPNWDIEDSIAGGSCWQKAFATENIADVESICKLNNVEFEW
ISTVSKEPPTLVTRYNSSWYVNQRLVLQTPLLGKAVYQDMIKRFPQRFDN
QKMHGTVEGGSVAPKVDLLHPNIPGKPFLEESEIVALMEALWKHVVFIEW
EKGDVVLIDNMNMAHGRMNCAGKRRIVASMAHKR Run BLAST on NCBI transcript from alignment at sc0000197:130890..133099+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014672 ID=TCONS_00014672|Name=TCONS_00014672|organism=Clytia hemisphaerica|type=transcript|length=2210bp|location=Sequence derived from alignment at sc0000197:130890..133099+ (Clytia hemisphaerica)
GTAAAAGCTGTTTGGCTACGCCATCGTCAGAACAAACATAAAAGCAAAGC
AAAGGAATCgataaaaatgtaaatacaTATGAAATTATTCTTTAGGGTAT
ATTCAAGTAATGCCATTTCTGAAAAATTGTACAGTAATTGTTGTGTTTTT
AGTTGATTGTTAAGTGACGGTTCCATGGTAGCTATAAACGACGCTTCTAG
AAACTTCCTATTCATCCCGAAATTTTCTTATGATTCTTTGTCTTAGACCA
CTCTCGTCATGACCATGAAGATTGTAAGAGGGAATGGAAAAGAAATCACT
TCGTATATACGAgacaataaaagtgaaatcataGACGCCTTTGAGACACC
CGGCGCCCTTCTCCTCCGTGAATTCGACACAAATCAGATTGAAATTGATG
AAGTTGCCCGATTAATAGGATATACACCAGCGCACACTTATATTCCAGGA
ATCGCTCCAAGGAAAGCTGCTATAGAAGGAAATCCGTTCGTATTTACTTC
GACAGAAGCACCGCCCCATCTCCCTATCCTTCCTCATACTGAAATGACTT
ATTGGCCGGACCCTCCCCATCTTATACTGTTTCAGTGCAAATTTCTTGAT
AGTTCATGTCCTCAAGTCAATGCAAATGAAACTGTGCTATTTGACATGAA
ACTAGCTGCTGCTGAGCTAaacgaaaatctgcttgagaAGTTAGCAAATG
GCTGCATTATGGAACGAAAATACCCTGGCAAATTCAACCCAAACTGGGAT
ATTGAGGACTCTATTGCAGGAGGTTCTTGTTGGCAAAAAGCTTTTGCTAC
TGAGAATATAGCTGATGTGGAGTCGATATGTAAATTGAATAATGTTGAAT
TTGAATGGATATCAACAGTAAGCAAGGAACCACCAACATTGGTGACAAGA
TATAACTCATCCTGGTATGTCAATCAACGATTGGTTTTACAGACACCCTT
GCTAGGGAAAGCAGTTTACCAAGACATGATCAAACGTTTTCCCCAAAGGT
TTGACAACCAAAAAATGCACGGAACTGTGGAAGGTGGTTCAGTTGCCCCA
AAAGTGGATCTCTTACATCCTAACATTCCTGGCAAACCTTTTCTTGAAGA
ATCGGAAATTGTTGCGTTGATGGAAGCTCTTTGGAAACATGTTGTGTTTA
TTGAGTGGGAAAAAGGTGATGTTGTTTTGATAGACAACATGAATATGGCT
CATGGAAGGATGAATTGTGCAGGGAAACGGAGGATTGTTGCCTCAATGGC
ACACAAGCGTTAAAGATTATCTGGTCAATGAGAAATATTGGAAtcataaa
ctttttttaatttattaatttACGCATCTGGAAAGTATGATTATATTTCC
GtttatcatttttcaaattttacacgTTTACGTATACTTGtaatttgtaa
ttgcttgcagtattcctTTGAATTCATTTATTGTTCGGTTTCCCAAATGC
CTAAGGGTGTTTGGCATTTGAAATGTCAATTTGAGCGGAGGAATCCCCTT
TTCAagcatttcaaaacaaacaaagagaaaataatCACATTTCACAGGTT
ATGACGAAAAATACTATGGAAACGGCCGAAAGTATCAAAATTGAGTCCCA
AATGCCAAATACCAAAAGCCGTCATATGTAAATGAGTGTGTGGTCTGAAA
CTGTTGATTGCATCTTTTTGTTTGTGATAGTGATTCCAAGACCACCGACA
CGAGGcggaaatatgaaaaaatttcttttacgATCGTTACATGTGTAACC
ATTGAGGAGAGCTGATAGGAGTGATGCTCATATGACTTCTTCAAATGGAA
CAAAATATTCTCTTGTCACAGGTACGGTCCTTATGATGTAGGTTGTGTTG
TATACTGTTTGTGAATGCACAGTACGCTGAATGGGGATGCATCCTGGCAA
TTTTGCTCAGTGACTTTTTTCAACGataataacactaaatcgaAGGATTA
GGAAAGTAACCAATCTTTGGACCATATTGAACGATGGTATTCCACTAATC
TTCTAACGCTTCGATAGAGCCAAGATCAGTGAGGCCATCAGCAAACGCGA
TCTTCTTAGCTGTGCTACCTGCTGCTTCTAGAAGTGGCAAAATCGCTAGC
GAGTATGTTGTCATTGATGTTGGATTTGGATTACCCTTCTTTCGATGCTA
ATTCTTTGCCGCGAGTTAGGAATAGACGTGCTGGTTTGGCGTAGCTGCTT
TGTAcaaccc Coding sequence (CDS) from alignment at sc0000197:130890..133099+ >TCONS_00014672 ID=TCONS_00014672|Name=TCONS_00014672|organism=Clytia hemisphaerica|type=CDS|length=1005bp|location=Sequence derived from alignment at sc0000197:130890..133099+ (Clytia hemisphaerica)
ATGACCATGAAGATTGTAAGAGGGAATGGAAAAGAAATCACTTCGTATAT
ACGAgacaataaaagtgaaatcataGACGCCTTTGAGACACCCGGCGCCC
TTCTCCTCCGTGAATTCGACACAAATCAGATTGAAATTGATGAAGTTGCC
CGATTAATAGGATATACACCAGCGCACACTTATATTCCAGGAATCGCTCC
AAGGAAAGCTGCTATAGAAGGAAATCCGTTCGTATTTACTTCGACAGAAG
CACCGCCCCATCTCCCTATCCTTCCTCATACTGAAATGACTTATTGGCCG
GACCCTCCCCATCTTATACTGTTTCAGTGCAAATTTCTTGATAGTTCATG
TCCTCAAGTCAATGCAAATGAAACTGTGCTATTTGACATGAAACTAGCTG
CTGCTGAGCTAaacgaaaatctgcttgagaAGTTAGCAAATGGCTGCATT
ATGGAACGAAAATACCCTGGCAAATTCAACCCAAACTGGGATATTGAGGA
CTCTATTGCAGGAGGTTCTTGTTGGCAAAAAGCTTTTGCTACTGAGAATA
TAGCTGATGTGGAGTCGATATGTAAATTGAATAATGTTGAATTTGAATGG
ATATCAACAGTAAGCAAGGAACCACCAACATTGGTGACAAGATATAACTC
ATCCTGGTATGTCAATCAACGATTGGTTTTACAGACACCCTTGCTAGGGA
AAGCAGTTTACCAAGACATGATCAAACGTTTTCCCCAAAGGTTTGACAAC
CAAAAAATGCACGGAACTGTGGAAGGTGGTTCAGTTGCCCCAAAAGTGGA
TCTCTTACATCCTAACATTCCTGGCAAACCTTTTCTTGAAGAATCGGAAA
TTGTTGCGTTGATGGAAGCTCTTTGGAAACATGTTGTGTTTATTGAGTGG
GAAAAAGGTGATGTTGTTTTGATAGACAACATGAATATGGCTCATGGAAG
GATGAATTGTGCAGGGAAACGGAGGATTGTTGCCTCAATGGCACACAAGC
GTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014672-exon-sc0000197-1491911889:130890..130957 | TCONS_00014672-exon-sc0000197-1491911889:130890..130957 | Clytia hemisphaerica | exon |
| TCONS_00014672-exon-sc0000197-1510915933:130890..130957 | TCONS_00014672-exon-sc0000197-1510915933:130890..130957 | Clytia hemisphaerica | exon |
| TCONS_00014672-exon-sc0000197-1575043694:130890..130957 | TCONS_00014672-exon-sc0000197-1575043694:130890..130957 | Clytia hemisphaerica | exon |
| TCONS_00014672-exon-sc0000197-1491911889:131136..133099 | TCONS_00014672-exon-sc0000197-1491911889:131136..133099 | Clytia hemisphaerica | exon |
| TCONS_00014672-exon-sc0000197-1510915933:131136..133099 | TCONS_00014672-exon-sc0000197-1510915933:131136..133099 | Clytia hemisphaerica | exon |
| TCONS_00014672-exon-sc0000197-1575043694:131136..133099 | TCONS_00014672-exon-sc0000197-1575043694:131136..133099 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000197 | supercontig | sc0000197:130890..133099 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003819 | TauD/TfdA-like |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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