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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000351_pilon:243170..246754+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_030124 ID=XLOC_030124|Name=XLOC_030124|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3585bp|location=Sequence derived from alignment at sc0000351_pilon:243170..246754+ (Clytia hemisphaerica_ch_hm2_pilon)
CAAAACCACGCTTACCCCTTCACCAAACTGCTCACCTTCCCTCATAGAAC
TGAACCATTCTGCTTCAAAGCTTTCTACAGGAACGATGTTGCCATCCCGC
ATCTTGATCGAGAAATCGGTGAGATAAATTTAGCTTTTTCACTACTTGAC
TAATTTGGCGCAAAAGTTCTTAGCAGTATTAGTTTTACTTTtgacttaat
ttttttcattttgttcattttcaggTGATTTCATTGTGAACGCTGGGGCA
GCTACTGACTCTTCAGtcgaaaaaattaaagtaaaagtaaaactACGTGT
CGATAAGAATGGTTGTTTCTCAGTTTGCAGTGCAACCATGGTTGAAACAT
TACCTCAGAGTGAGGCTCCCATCGAGGAACCTATGGAAACAGATACCTCG
ACACCCGTTGTCAATGGtgataataaagaaaataatgataaacctgctga
atcagcagaaactCCAAGTAAAACTGAAGAAGAACAAAAGGGTCAAGACC
AAGCGAAAGTAAGGACTGACTTATCGTAGTTAGTATGATAACCTCTTCGT
GATCCGCATATTTTGGGgagaaagagacaattattttaGAGGCTTGTTTG
CTCATTTGAACTCTTTATCGCGCTTCCTTTTTACAGAAGTCTCCTGAAGA
AGCAACCACAGACAAGAAAGAGGACAAGTCAGACGACGTCAAGAAACCAG
AAgcgaaaaaagcaaagaaattgaCCAAATCAactgatttgaaaattgac
CCAATCCAAACAGGGCTTACTGCTGAAGACATAGCGAATCTCGTTTCTAT
CGAACAAGAGTTACAATTCCATGCCCGCGTTGAAAAAGAACGAGCTGATG
CTAAAAATAATTTAGAGGAATATATTTATGCGATGAGGGATAAACTGTCC
GGTGATTTAGAGAATTATGTTGAGGAAGGACAACGAGATGAATTTTCAGT
TCAATTGGAAGATGGAGAATCATGGCTGTATGGTGATGGAGAAGATCTTC
AAAAACAAGCTTACATCGATAAATTGGAAGGACTAAAGGTAATACCCGTG
ACCGGTGTATCGTTTCTGAAGGATCCTTCTTGTCATTGAATTACTATTGA
tgggctgttttgttttgttaaaacATCTTCTTTTAAAGTCACTGGAATCT
CTCAAACCTCAAAGCTCCTTGTGTCGCTTGAAGTTAGGATTGACATATAC
TGGAATCActcttaccttaagggaagaaattttcgcggaattcaATTTAG
tggttttttaaaaaatctgcgAAATTAGATTCCGTGAAACAcgaggattt
aaaaaatcacccctaaaattggtctttttaggacAAAATAGGCTATATTT
TGTAACCATAAAAATTCCTGTGTTTTCCAAACAgctcgaaaattttaaaa
ataactaaattactcatttaaattttttgtagaaaataaGTCAACCAATG
GAAGATCGTTGTGTGGCACACCAAGCCATCCCCGGAGCAATTGACAACTT
TGGAAAAGCCATGACACACTATAAAAAGATACTTGAACAATATGAAAACA
AAGTAAGAAACTTCTCTCAACTAAGAGTCCCACTTTAGATATTTAGGCTA
TCAGACCGTGCCATGTTATATGTGAACTTAAAATAATTTCCATGTACTAG
TACTCATTTCTCAATCAAAATTCTTTGTCAAGTTGTTACCGTTCacgttc
ttcttcttcttttaggATGAAAAATATGTACACATAGAAgcggaagaaat
gaaaaaagtgaagaataaAGTGGAAGAGAAATTCAATTGGTTCAACGAAA
AACTGAACGAAATGGGGAAGTGTCCAAAAACGAAAAACCCGCCTGTCTAT
CCCTCACAGATTGAAACCGAGAAAAAGGTAaccaattttttcacattttg
cgATCGCTTGATATACACGGTGTGATGTCAGAACATAACAAGATACTTAC
ACCATTGACGTAACTGCCAGAGATTTGGGCTCCAGCGTATTTAGGGCCTT
TGATCTCGCTTTTGAAAACTGAACCTTCGATGTTTCTCTTAACctctcag
ggggggggtcaacatttataataccaacccatagcccaaaaacctgaatt
ttgaccttttgagctaagttaacaccaccaccccaaaattggtatcgata
ccaatttgaaaattgtaattttcagaaaaaggggggacccacccccttat
tttggtatcgatactagcttgaaaatcataattttcagaaaaagggggga
cccacccccttaatttggtatcgataccaacatgactttttgaatttgac
aaaatatcatgggacccaccccctaatttagtaccaataccaatctgaca
aatttgagtttaaagctgtttaaagggaatccccctcccacacaaacagg
gtactaagagaaacttcaaaaaaactcatttttgaaatactctttcttca
acacaacacaaaaaatgtcatatgctaaaatagaaaatgactgaaaactg
acaatataataaaaacaaacccaatgaagctagcaaaatcaatctgaatc
aatattatctgaatataattgatgtgcaaaaactaggagaagctattatt
agtacataattttagaacagaattCATTCACTtattaccaaatgctatca
cagaaaaaatgtttttgctccaggcttgatcaaaaataaaacttgaaaat
atcgaaaaagtccaaaataaacaaacttcaaagtcatttatacttattac
tcatttacagtcattatactcaaatgctaaaataaatccaattgaaacct
gtttagactgatatgtaccccggggtattttttttttttttttatttttt
ttatttttattttttttttttttttttatttttttttttttttttttttt
ttttttttttttttttttttttttatttttattttttttttttatttttt
ttttttattttatttttttttttttttttattttttttttttatttttat
ttttatttttttattttttattttttattttttattttTAtttttttAtt
ttgtgaaaagataacttttaaaatttgaatcatattatttaaaaaaaagg
ggtacccaccccctattttggtgtcaataccaactgaggataactctttt
ttccaaaaaaaagggggacccacccccatcaataccaacttgacttttca
gacttttaaaggaaaaaaagacaccaccacccggctatgggtctggtatc
tggatgttgacccccccctgaaCCTCTCCTACCTTATATTGAAATGTCTT
TAGCACACAGGTCCACAGCATACCTCAACAGAGCTAATATTTTAGCCTTC
CGTCTCTTTCTCTTGATAGTTAATGCAAACATTTTGTGATCCTATCGTCA
ACAAACCGAAACCGAAAGTGGAGCCACcgaaagacgaacccaaaaaagaa
ggagaagagggagcaaaaccggaagaaacgaaaaacgaaaaaactacgga
acaaccgcaaactacggaaaacatggaaacAGACACTCCTAAACCGGAAG
GCAAATCTGAAGATTTGGGAATGGAAGTCGATTAA Coding sequence (CDS) from alignment at sc0000351_pilon:243170..246754+ >XLOC_030124 ID=XLOC_030124|Name=XLOC_030124|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2604bp|location=Sequence derived from alignment at sc0000351_pilon:243170..246754+ (Clytia hemisphaerica_ch_hm2_pilon)
CAAAACCACGCTTACCCCTTCACCAAACTGCTCACCTTCCCTCATAGAAC
TGAACCATTCTGCTTCAAAGCTTTCTACAGGAACGATGTTGCCATCCCGC
ATCTTGATCGAGAAATCGCAAAACCACGCTTACCCCTTCACCAAACTGCT
CACCTTCCCTCATAGAACTGAACCATTCTGCTTCAAAGCTTTCTACAGGA
ACGATGTTGCCATCCCGCATCTTGATCGAGAAATCGgTGATTTCATTGTG
AACGCTGGGGCAGCTACTGACTCTTCAGtcgaaaaaattaaagtaaaagt
aaaactACGTGTCGATAAGAATGGTTGTTTCTCAGTTTGCAGTGCAACCA
TGGTTGAAACATTACCTCAGAGTGAGGCTCCCATCGAGGAACCTATGGAA
ACAGATACCTCGACACCCGTTGTCAATGGtgataataaagaaaataatga
taaacctgctgaatcagcagaaactCCAAGTAAAACTGAAGAAGAACAAA
AGGGTCAAGACCAAGCGAAAgTGATTTCATTGTGAACGCTGGGGCAGCTA
CTGACTCTTCAGtcgaaaaaattaaagtaaaagtaaaactACGTGTCGAT
AAGAATGGTTGTTTCTCAGTTTGCAGTGCAACCATGGTTGAAACATTACC
TCAGAGTGAGGCTCCCATCGAGGAACCTATGGAAACAGATACCTCGACAC
CCGTTGTCAATGGtgataataaagaaaataatgataaacctgctgaatca
gcagaaactCCAAGTAAAACTGAAGAAGAACAAAAGGGTCAAGACCAAGC
GAAAAAGTCTCCTGAAGAAGCAACCACAGACAAGAAAGAGGACAAGTCAG
ACGACGTCAAGAAACCAGAAgcgaaaaaagcaaagaaattgaCCAAATCA
actgatttgaaaattgacCCAATCCAAACAGGGCTTACTGCTGAAGACAT
AGCGAATCTCGTTTCTATCGAACAAGAGTTACAATTCCATGCCCGCGTTG
AAAAAGAACGAGCTGATGCTAAAAATAATTTAGAGGAATATATTTATGCG
ATGAGGGATAAACTGTCCGGTGATTTAGAGAATTATGTTGAGGAAGGACA
ACGAGATGAATTTTCAGTTCAATTGGAAGATGGAGAATCATGGCTGTATG
GTGATGGAGAAGATCTTCAAAAACAAGCTTACATCGATAAATTGGAAGGA
CTAAAGAAGTCTCCTGAAGAAGCAACCACAGACAAGAAAGAGGACAAGTC
AGACGACGTCAAGAAACCAGAAgcgaaaaaagcaaagaaattgaCCAAAT
CAactgatttgaaaattgacCCAATCCAAACAGGGCTTACTGCTGAAGAC
ATAGCGAATCTCGTTTCTATCGAACAAGAGTTACAATTCCATGCCCGCGT
TGAAAAAGAACGAGCTGATGCTAAAAATAATTTAGAGGAATATATTTATG
CGATGAGGGATAAACTGTCCGGTGATTTAGAGAATTATGTTGAGGAAGGA
CAACGAGATGAATTTTCAGTTCAATTGGAAGATGGAGAATCATGGCTGTA
TGGTGATGGAGAAGATCTTCAAAAACAAGCTTACATCGATAAATTGGAAG
GACTAAAGaaaataaGTCAACCAATGGAAGATCGTTGTGTGGCACACCAA
GCCATCCCCGGAGCAATTGACAACTTTGGAAAAGCCATGACACACTATAA
AAAGATACTTGAACAATATGAAAACAAAaaaataaGTCAACCAATGGAAG
ATCGTTGTGTGGCACACCAAGCCATCCCCGGAGCAATTGACAACTTTGGA
AAAGCCATGACACACTATAAAAAGATACTTGAACAATATGAAAACAAAgA
TGAAAAATATGTACACATAGAAgcggaagaaatgaaaaaagtgaagaata
aAGTGGAAGAGAAATTCAATTGGTTCAACGAAAAACTGAACGAAATGGGG
AAGTGTCCAAAAACGAAAAACCCGCCTGTCTATCCCTCACAGATTGAAAC
CGAGAAAAAGgATGAAAAATATGTACACATAGAAgcggaagaaatgaaaa
aagtgaagaataaAGTGGAAGAGAAATTCAATTGGTTCAACGAAAAACTG
AACGAAATGGGGAAGTGTCCAAAAACGAAAAACCCGCCTGTCTATCCCTC
ACAGATTGAAACCGAGAAAAAGTTAATGCAAACATTTTGTGATCCTATCG
TCAACAAACCGAAACCGAAAGTGGAGCCACcgaaagacgaacccaaaaaa
gaaggagaagagggagcaaaaccggaagaaacgaaaaacgaaaaaactac
ggaacaaccgcaaactacggaaaacatggaaacAGACACTCCTAAACCGG
AAGGCAAATCTGAAGATTTGGGAATGGAAGTCGATTAATTAATGCAAACA
TTTTGTGATCCTATCGTCAACAAACCGAAACCGAAAGTGGAGCCACcgaa
agacgaacccaaaaaagaaggagaagagggagcaaaaccggaagaaacga
aaaacgaaaaaactacggaacaaccgcaaactacggaaaacatggaaacA
GACACTCCTAAACCGGAAGGCAAATCTGAAGATTTGGGAATGGAAGTCGA
TTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000351_pilon | genome | sc0000351_pilon:243170..246754 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1219-1434:3370 |
| Aaloc | 1057-1218:1716 |
| Aaloc | 937-1056:1433 |
| Aaloc | 535-936:637 |
| Aaloc | 253-534:227 |
| Aaloc | 133-249:1 |
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